Initializing AMReX (25.10-26-g807c7a26649b)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.10-26-g807c7a26649b) initialized Starting run at 05:26:07 UTC on 2025-10-20. Successfully read inputs file ... Castro git describe: 25.10-3-gf66826a87 AMReX git describe: 25.10-26-g807c7a266 Microphysics git describe: 25.10-3-g7d0117cb reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014308584 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.342352413 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.323853633 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.343594806 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.314858514 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.36341837 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.304823964 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.298428527 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.296734392 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.299439727 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298188189 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007860347 seconds Ending run at 05:26:10 UTC on 2025-10-20. Run time = 3.384230459 Run time without initialization = 3.198952596 Average number of zones advanced per microsecond: 0.819 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3783 ... 3.3824 ... 3.3843 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1796 2.2240 2.2656 66.95% Gravity::make_radial_gravity() 21 0.2918 0.3121 0.3266 9.65% check_for_negative_density() 10 0.05189 0.09599 0.1436 4.24% Castro::initData() 1 0.03779 0.0754 0.1113 3.29% Castro::estTimeStep() 21 0.02741 0.0686 0.1055 3.12% amrex::Copy() 193 0.06707 0.08112 0.09155 2.71% FabArray::ParallelCopy_finish() 41 0.04372 0.05448 0.08974 2.65% FabArray::setVal() 143 0.05625 0.06578 0.07167 2.12% Castro::reset_internal_energy(Fab) 1008 0.04206 0.0456 0.05641 1.67% Castro::normalize_species() 62 0.04436 0.04539 0.04747 1.40% FabArray::ParallelCopy_nowait() 41 0.03511 0.04018 0.04278 1.26% FillPatchIterator::Initialize 41 0.02872 0.03243 0.03485 1.03% StateData::FillBoundary(geom) 41 0.0289 0.03079 0.03333 0.98% Gravity::interpolate_monopole_grav() 21 0.02708 0.02725 0.02768 0.82% Castro::construct_new_gravity_source() 10 0.02191 0.0236 0.02454 0.73% Castro::computeTemp() 63 0.01695 0.01786 0.01956 0.58% Castro::initialize_do_advance() 10 0.01167 0.01617 0.01712 0.51% Castro::initialize_advance() 10 0.005179 0.01076 0.01431 0.42% MultiFab::contains_nan() 20 0.01032 0.01158 0.0141 0.42% FabArray::Saxpy() 20 0.0103 0.01204 0.01295 0.38% FabArray::setDomainBndry() 41 0.007109 0.01033 0.01265 0.37% Amr::writePlotFile() 2 0.007614 0.01038 0.01216 0.36% VisMF::Write(FabArray) 2 0.008773 0.009547 0.01205 0.36% Castro::initMFs() 1 0.006381 0.008004 0.01094 0.32% Castro::construct_old_gravity_source() 10 0.006063 0.00852 0.009138 0.27% StateData::define() 4 0.00528 0.006501 0.008511 0.25% Castro::construct_new_source() 50 0.005327 0.005945 0.00622 0.18% main() 1 0.003699 0.004276 0.004651 0.14% Gravity::get_new_grav_vector() 11 0.002866 0.003468 0.003959 0.12% Gravity::get_old_grav_vector() 10 0.001785 0.002262 0.003945 0.12% Amr::coarseTimeStep() 10 0.0009924 0.002072 0.002792 0.08% Castro::finalize_do_advance() 10 0.0006291 0.001136 0.001499 0.04% AmrLevel::FillPatch() 41 0.0007908 0.001025 0.001152 0.03% Amr::timeStep() 10 0.0001448 0.000183 0.0003973 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002655 0.0002931 0.0003697 0.01% Castro::do_advance_ctu() 10 0.0001318 0.000167 0.0002091 0.01% Castro::clean_state() 62 0.000148 0.0001552 0.0001639 0.00% StateDataPhysBCFunct::() 41 0.0001115 0.0001298 0.0001418 0.00% FillPatchIterator::FillFromLevel0() 41 9.278e-05 0.0001082 0.0001203 0.00% FabArray::ParallelCopy() 41 8.91e-05 9.97e-05 0.0001177 0.00% Castro::do_old_sources() 10 6.599e-05 8.044e-05 9.15e-05 0.00% Castro::Castro() 1 4.423e-05 5.365e-05 7.916e-05 0.00% FillPatchSingleLevel 41 6.184e-05 6.483e-05 7.298e-05 0.00% Castro::construct_old_source() 50 4.423e-05 6.135e-05 6.888e-05 0.00% Amr::FinalizeInit() 1 3.113e-06 1.2e-05 6.697e-05 0.00% Castro::do_new_sources() 10 4.605e-05 5.547e-05 6.476e-05 0.00% Castro::subcycle_advance_ctu() 10 4.097e-05 4.786e-05 5.476e-05 0.00% Castro::apply_source_to_state() 20 3.631e-05 4.614e-05 5.231e-05 0.00% Amr::defBaseLevel() 1 3.185e-05 3.83e-05 5.032e-05 0.00% Castro::advance() 10 3.652e-05 4.214e-05 4.864e-05 0.00% Castro::construct_old_gravity() 10 3.164e-05 3.891e-05 4.431e-05 0.00% Castro::construct_new_gravity() 10 2.862e-05 3.276e-05 3.723e-05 0.00% Castro::check_for_nan() 20 2.204e-05 2.587e-05 3.438e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.478e-05 2.081e-05 3.288e-05 0.00% Castro::expand_state() 10 2.017e-05 2.23e-05 2.471e-05 0.00% Castro::post_timestep() 10 1.375e-05 1.667e-05 2.257e-05 0.00% Castro::post_init() 1 1.56e-05 1.763e-05 2.195e-05 0.00% Castro::computeNewDt() 9 8.08e-06 9.354e-06 1.028e-05 0.00% Amr::InitializeInit() 1 3.302e-06 4.58e-06 9.262e-06 0.00% Castro::computeInitialDt() 2 3.195e-06 3.647e-06 4.5e-06 0.00% Amr::init() 1 1.756e-06 2.522e-06 3.963e-06 0.00% Amr::initialInit() 1 1.586e-06 1.906e-06 2.186e-06 0.00% Other 256 0.01044 0.01593 0.01966 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.378 3.382 3.384 100.00% Amr::coarseTimeStep() 10 3.187 3.187 3.187 94.16% Amr::timeStep() 10 3.174 3.175 3.176 93.84% Castro::advance() 10 3.159 3.159 3.16 93.36% Castro::subcycle_advance_ctu() 10 3.083 3.089 3.103 91.68% Castro::do_advance_ctu() 10 3.083 3.089 3.103 91.68% Castro::construct_ctu_hydro_source() 10 2.338 2.341 2.344 69.25% Gravity::make_radial_gravity() 21 0.3078 0.3277 0.3392 10.02% AmrLevel::FillPatch() 41 0.1826 0.2006 0.216 6.38% Castro::construct_old_gravity() 10 0.1883 0.2055 0.2155 6.37% Gravity::get_old_grav_vector() 10 0.1873 0.2048 0.2148 6.35% Gravity::get_new_grav_vector() 11 0.204 0.2049 0.2059 6.08% FillPatchIterator::Initialize 41 0.1509 0.1687 0.1911 5.65% Amr::init() 1 0.1798 0.1834 0.1853 5.48% Castro::construct_new_gravity() 10 0.1818 0.1822 0.1827 5.40% Castro::initialize_do_advance() 10 0.159 0.1651 0.1767 5.22% Amr::initialInit() 1 0.1649 0.1688 0.1706 5.04% FillPatchIterator::FillFromLevel0() 41 0.1129 0.126 0.1553 4.59% FillPatchSingleLevel 41 0.1128 0.1259 0.1551 4.58% check_for_negative_density() 10 0.05189 0.09599 0.1436 4.24% Amr::InitializeInit() 1 0.06214 0.1007 0.1387 4.10% Amr::defBaseLevel() 1 0.06214 0.1007 0.1387 4.10% Castro::clean_state() 62 0.109 0.1144 0.1274 3.76% FabArray::ParallelCopy() 41 0.08375 0.09486 0.1251 3.70% Castro::expand_state() 10 0.1052 0.1109 0.1232 3.64% Castro::initData() 1 0.04139 0.07899 0.1149 3.39% Amr::FinalizeInit() 1 0.02664 0.06808 0.1084 3.20% Castro::estTimeStep() 21 0.02741 0.0686 0.1055 3.12% Castro::do_old_sources() 10 0.08864 0.09654 0.1014 3.00% amrex::Copy() 193 0.06707 0.08112 0.09155 2.71% FabArray::ParallelCopy_finish() 41 0.04372 0.05448 0.08974 2.65% Castro::computeInitialDt() 2 0.002156 0.04373 0.08403 2.48% Castro::computeTemp() 63 0.0593 0.06376 0.07634 2.26% Castro::initialize_advance() 10 0.05277 0.06742 0.07301 2.16% FabArray::setVal() 143 0.05625 0.06578 0.07167 2.12% Castro::do_new_sources() 10 0.05613 0.06218 0.06791 2.01% Castro::reset_internal_energy(MultiFab) 63 0.04233 0.0459 0.05678 1.68% Castro::reset_internal_energy(Fab) 1008 0.04206 0.0456 0.05641 1.67% Castro::normalize_species() 62 0.04436 0.04539 0.04747 1.40% FabArray::ParallelCopy_nowait() 41 0.03522 0.04028 0.04287 1.27% StateDataPhysBCFunct::() 41 0.02902 0.03092 0.03344 0.99% StateData::FillBoundary(geom) 41 0.0289 0.03079 0.03333 0.98% Castro::construct_new_source() 50 0.02723 0.02954 0.03062 0.90% Gravity::interpolate_monopole_grav() 21 0.02708 0.02725 0.02768 0.82% Castro::construct_new_gravity_source() 10 0.02191 0.0236 0.02454 0.73% Castro::post_init() 1 0.02358 0.02389 0.02403 0.71% Castro::finalize_do_advance() 10 0.01214 0.0175 0.0233 0.69% Amr::writePlotFile() 2 0.02239 0.02255 0.02287 0.68% Castro::post_timestep() 10 0.01478 0.01536 0.01578 0.47% Castro::Castro() 1 0.009336 0.01151 0.01518 0.45% Castro::check_for_nan() 20 0.01035 0.01161 0.01414 0.42% MultiFab::contains_nan() 20 0.01032 0.01158 0.0141 0.42% Castro::apply_source_to_state() 20 0.01034 0.01209 0.01299 0.38% FabArray::Saxpy() 20 0.0103 0.01204 0.01295 0.38% FabArray::setDomainBndry() 41 0.007109 0.01033 0.01265 0.37% VisMF::Write(FabArray) 2 0.008773 0.009547 0.01205 0.36% Castro::initMFs() 1 0.006381 0.008004 0.01094 0.32% Castro::construct_old_source() 50 0.006107 0.008581 0.009201 0.27% Castro::construct_old_gravity_source() 10 0.006063 0.00852 0.009138 0.27% AmrLevel::AmrLevel(dm) 1 0.005295 0.006522 0.008541 0.25% Castro::computeNewDt() 9 0.008501 0.008512 0.008529 0.25% StateData::define() 4 0.00528 0.006501 0.008511 0.25% Other 256 0.01506 0.02436 0.03034 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 41 B 68 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8648 KiB 8658 KiB 8663 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6740 KiB 6748 KiB 6759 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7124 KiB 7133 KiB 7140 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4551 KiB 4561 KiB 4589 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 204 KiB 223 KiB 243 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2797 KiB 2801 KiB 2804 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 231 KiB 246 KiB 256 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 42 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2024 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 77 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 77 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.10-26-g807c7a26649b) finalized