Initializing AMReX (25.10-27-g2e583c208310)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.10-27-g2e583c208310) initialized Starting run at 05:22:08 UTC on 2025-10-21. Successfully read inputs file ... Castro git describe: 25.10-5-g3a58e12b1 AMReX git describe: 25.10-27-g2e583c208 Microphysics git describe: 25.10-4-gcc0c379f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014612354 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.339688872 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.332731758 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.321569074 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.318910549 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.384473951 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.303788054 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296227184 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.296218496 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.296396869 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298551265 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007705164 seconds Ending run at 05:22:12 UTC on 2025-10-21. Run time = 3.390385326 Run time without initialization = 3.20127807 Average number of zones advanced per microsecond: 0.819 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3890 ... 3.3899 ... 3.3906 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1829 2.2290 2.3067 68.03% Gravity::make_radial_gravity() 21 0.2891 0.2963 0.313 9.23% check_for_negative_density() 10 0.01002 0.09 0.1406 4.15% Castro::initData() 1 0.03771 0.07333 0.1222 3.60% Castro::estTimeStep() 21 0.0316 0.07783 0.1147 3.38% FabArray::ParallelCopy_finish() 41 0.04984 0.06947 0.1122 3.31% amrex::Copy() 193 0.06427 0.08289 0.09712 2.86% FabArray::setVal() 143 0.05192 0.06563 0.07205 2.12% Castro::normalize_species() 62 0.04481 0.04589 0.04781 1.41% Castro::reset_internal_energy(Fab) 1008 0.04445 0.04642 0.04764 1.41% FabArray::ParallelCopy_nowait() 41 0.03688 0.04145 0.0433 1.28% FillPatchIterator::Initialize 41 0.02804 0.03361 0.03661 1.08% StateData::FillBoundary(geom) 41 0.02922 0.03172 0.03398 1.00% Gravity::interpolate_monopole_grav() 21 0.02644 0.02732 0.03125 0.92% Castro::construct_new_gravity_source() 10 0.02339 0.02431 0.02676 0.79% Castro::computeTemp() 63 0.01779 0.01826 0.01872 0.55% Castro::initialize_do_advance() 10 0.01144 0.01653 0.01803 0.53% Castro::initialize_advance() 10 0.005234 0.01063 0.01364 0.40% FabArray::Saxpy() 20 0.01012 0.01202 0.01328 0.39% FabArray::setDomainBndry() 41 0.007213 0.01068 0.01296 0.38% VisMF::Write(FabArray) 2 0.00881 0.009667 0.01213 0.36% Amr::writePlotFile() 2 0.007311 0.01021 0.01203 0.35% MultiFab::contains_nan() 20 0.01069 0.01108 0.01186 0.35% Castro::construct_old_gravity_source() 10 0.006449 0.008744 0.009477 0.28% Castro::initMFs() 1 0.006605 0.006949 0.00831 0.25% Castro::enforce_min_density() 62 0.005664 0.005995 0.006353 0.19% Castro::construct_new_source() 50 0.005437 0.006025 0.006299 0.19% main() 1 0.003756 0.004059 0.004338 0.13% Gravity::get_new_grav_vector() 11 0.00315 0.003655 0.004101 0.12% Gravity::get_old_grav_vector() 10 0.001534 0.002219 0.002789 0.08% Amr::coarseTimeStep() 10 0.0009691 0.001459 0.002181 0.06% Castro::finalize_do_advance() 10 0.0005802 0.001026 0.001225 0.04% AmrLevel::FillPatch() 41 0.0007714 0.000947 0.001094 0.03% Amr::timeStep() 10 0.0001296 0.0001882 0.0004476 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002725 0.0002832 0.0003009 0.01% Castro::do_advance_ctu() 10 0.000118 0.000166 0.0001934 0.01% Castro::do_old_sources() 10 6.218e-05 9.964e-05 0.0001806 0.01% StateDataPhysBCFunct::() 41 0.0001099 0.0001384 0.0001791 0.01% Castro::clean_state() 62 0.0001425 0.0001568 0.0001649 0.00% FillPatchIterator::FillFromLevel0() 41 9.398e-05 0.0001094 0.0001319 0.00% FabArray::ParallelCopy() 41 8.792e-05 0.0001057 0.0001156 0.00% Castro::construct_old_source() 50 4.279e-05 6.989e-05 9.719e-05 0.00% Castro::Castro() 1 4.973e-05 7.293e-05 8.867e-05 0.00% FillPatchSingleLevel 41 6.188e-05 6.806e-05 8.128e-05 0.00% Amr::FinalizeInit() 1 3.608e-06 1.348e-05 7.643e-05 0.00% Castro::do_new_sources() 10 4.85e-05 5.973e-05 6.836e-05 0.00% Castro::subcycle_advance_ctu() 10 4.36e-05 5.015e-05 6.372e-05 0.00% Castro::apply_source_to_state() 20 3.228e-05 4.762e-05 5.773e-05 0.00% Castro::advance() 10 3.521e-05 4.189e-05 4.917e-05 0.00% Castro::construct_new_gravity() 10 2.965e-05 3.661e-05 4.572e-05 0.00% Castro::construct_old_gravity() 10 3.088e-05 3.861e-05 4.272e-05 0.00% Amr::defBaseLevel() 1 2.966e-05 3.327e-05 3.889e-05 0.00% Castro::expand_state() 10 2.216e-05 2.574e-05 2.842e-05 0.00% Castro::check_for_nan() 20 2.156e-05 2.503e-05 2.769e-05 0.00% Castro::post_init() 1 1.546e-05 1.842e-05 2.542e-05 0.00% Castro::post_timestep() 10 1.428e-05 1.532e-05 1.773e-05 0.00% Castro::computeNewDt() 9 8.586e-06 9.598e-06 1.261e-05 0.00% Amr::InitializeInit() 1 2.492e-06 4.977e-06 1.047e-05 0.00% Castro::computeInitialDt() 2 3.302e-06 3.872e-06 4.84e-06 0.00% Amr::initialInit() 1 1.443e-06 2.113e-06 2.74e-06 0.00% Amr::init() 1 1.693e-06 2.359e-06 2.719e-06 0.00% Other 203 0.01015 0.01266 0.01471 0.43% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.389 3.39 3.391 100.00% Amr::coarseTimeStep() 10 3.189 3.189 3.189 94.06% Amr::timeStep() 10 3.178 3.178 3.179 93.75% Castro::advance() 10 3.162 3.162 3.162 93.27% Castro::subcycle_advance_ctu() 10 3.086 3.091 3.107 91.63% Castro::do_advance_ctu() 10 3.086 3.091 3.107 91.62% Castro::construct_ctu_hydro_source() 10 2.337 2.34 2.345 69.16% Gravity::make_radial_gravity() 21 0.3063 0.3133 0.3269 9.64% AmrLevel::FillPatch() 41 0.1953 0.2203 0.2384 7.03% FillPatchIterator::Initialize 41 0.1663 0.1874 0.2146 6.33% Gravity::get_new_grav_vector() 11 0.2087 0.2097 0.2112 6.23% Castro::construct_old_gravity() 10 0.1875 0.1939 0.2041 6.02% Gravity::get_old_grav_vector() 10 0.1868 0.1932 0.2034 6.00% Amr::init() 1 0.1876 0.1885 0.189 5.57% Castro::construct_new_gravity() 10 0.1842 0.1855 0.1864 5.50% FillPatchIterator::FillFromLevel0() 41 0.1267 0.1432 0.1793 5.29% FillPatchSingleLevel 41 0.1266 0.143 0.1792 5.29% Amr::initialInit() 1 0.1724 0.1736 0.1742 5.14% Castro::initialize_do_advance() 10 0.1576 0.166 0.1703 5.02% FabArray::ParallelCopy() 41 0.09261 0.1111 0.1493 4.40% Amr::InitializeInit() 1 0.05946 0.09493 0.1444 4.26% Amr::defBaseLevel() 1 0.05945 0.09492 0.1444 4.26% check_for_negative_density() 10 0.01002 0.09 0.1406 4.15% Castro::initData() 1 0.04171 0.07728 0.1262 3.72% Castro::expand_state() 10 0.1041 0.1126 0.1229 3.62% Castro::clean_state() 62 0.1141 0.1161 0.1173 3.46% Castro::estTimeStep() 21 0.0316 0.07783 0.1147 3.38% Amr::FinalizeInit() 1 0.02798 0.07871 0.1146 3.38% Castro::do_old_sources() 10 0.09616 0.1065 0.114 3.36% FabArray::ParallelCopy_finish() 41 0.04984 0.06947 0.1122 3.31% amrex::Copy() 193 0.06427 0.08289 0.09712 2.86% Castro::computeInitialDt() 2 0.002348 0.05263 0.08853 2.61% Castro::initialize_advance() 10 0.05173 0.06743 0.0727 2.14% FabArray::setVal() 143 0.05192 0.06563 0.07205 2.12% Castro::do_new_sources() 10 0.05946 0.0632 0.06941 2.05% Castro::computeTemp() 63 0.06265 0.06496 0.06666 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04472 0.0467 0.04795 1.41% Castro::normalize_species() 62 0.04481 0.04589 0.04781 1.41% Castro::reset_internal_energy(Fab) 1008 0.04445 0.04642 0.04764 1.41% FabArray::ParallelCopy_nowait() 41 0.03701 0.04155 0.04339 1.28% StateDataPhysBCFunct::() 41 0.02937 0.03185 0.03411 1.01% StateData::FillBoundary(geom) 41 0.02922 0.03172 0.03398 1.00% Castro::construct_new_source() 50 0.02901 0.03033 0.03306 0.98% Gravity::interpolate_monopole_grav() 21 0.02644 0.02732 0.03125 0.92% Castro::construct_new_gravity_source() 10 0.02339 0.02431 0.02676 0.79% Castro::post_init() 1 0.02479 0.02551 0.02571 0.76% Amr::writePlotFile() 2 0.02252 0.02265 0.02309 0.68% Castro::finalize_do_advance() 10 0.01101 0.01778 0.0214 0.63% Castro::post_timestep() 10 0.01535 0.01591 0.01655 0.49% Castro::apply_source_to_state() 20 0.01015 0.01207 0.01333 0.39% FabArray::Saxpy() 20 0.01012 0.01202 0.01328 0.39% FabArray::setDomainBndry() 41 0.007213 0.01068 0.01296 0.38% VisMF::Write(FabArray) 2 0.00881 0.009667 0.01213 0.36% Castro::Castro() 1 0.01072 0.01107 0.01191 0.35% Castro::check_for_nan() 20 0.01071 0.0111 0.01189 0.35% MultiFab::contains_nan() 20 0.01069 0.01108 0.01186 0.35% Castro::construct_old_source() 50 0.006491 0.008814 0.009551 0.28% Castro::construct_old_gravity_source() 10 0.006449 0.008744 0.009477 0.28% Castro::computeNewDt() 9 0.008445 0.008469 0.008488 0.25% Castro::initMFs() 1 0.006605 0.006949 0.00831 0.25% Castro::enforce_min_density() 62 0.005664 0.005995 0.006353 0.19% Other 203 0.02017 0.02417 0.02763 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 38 B 52 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8670 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6732 KiB 6739 KiB 6744 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4548 KiB 4556 KiB 4581 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 213 KiB 237 KiB 259 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2794 KiB 2798 KiB 2799 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 235 KiB 245 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 39 KiB 46 KiB 65 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 73 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.10-27-g2e583c208310) finalized