Initializing AMReX (25.10-28-g82fa0de69508)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.10-28-g82fa0de69508) initialized Starting run at 05:32:56 UTC on 2025-10-22. Successfully read inputs file ... Castro git describe: 25.10-5-g3a58e12b1 AMReX git describe: 25.10-28-g82fa0de69 Microphysics git describe: 25.10-4-gcc0c379f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015549049 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.354534781 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.349607519 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.318679937 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.320839926 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.368872265 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.3063114 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.298661441 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.298836884 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.299530204 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.299693286 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.023584619 seconds Ending run at 05:33:00 UTC on 2025-10-22. Run time = 3.423135565 Run time without initialization = 3.244069513 Average number of zones advanced per microsecond: 0.808 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4218 ... 3.4225 ... 3.4236 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1805 2.2349 2.3122 67.54% Gravity::make_radial_gravity() 21 0.2898 0.3139 0.3328 9.72% check_for_negative_density() 10 0.02729 0.1069 0.1632 4.77% Castro::initData() 1 0.03891 0.07446 0.112 3.27% Castro::estTimeStep() 21 0.03127 0.06562 0.107 3.13% amrex::Copy() 193 0.06497 0.07948 0.09428 2.75% FabArray::ParallelCopy_finish() 41 0.03967 0.05647 0.08771 2.56% FabArray::setVal() 143 0.05211 0.06623 0.07453 2.18% Castro::reset_internal_energy(Fab) 1008 0.04569 0.04733 0.0535 1.56% Castro::normalize_species() 62 0.04477 0.04607 0.05049 1.47% StateData::FillBoundary(geom) 41 0.02883 0.03343 0.04479 1.31% FabArray::ParallelCopy_nowait() 41 0.03859 0.04076 0.04227 1.23% FillPatchIterator::Initialize 41 0.02917 0.03248 0.03465 1.01% Amr::writePlotFile() 2 0.00759 0.02477 0.02906 0.85% Gravity::interpolate_monopole_grav() 21 0.02657 0.02699 0.02766 0.81% Castro::construct_new_gravity_source() 10 0.02293 0.02412 0.02552 0.75% Castro::computeTemp() 63 0.01785 0.01926 0.02313 0.68% Castro::initialize_do_advance() 10 0.01167 0.01597 0.01739 0.51% UtilCreateCleanDirectory() 2 5.76e-07 0.002016 0.01612 0.47% MultiFab::contains_nan() 20 0.01112 0.0124 0.01558 0.46% Castro::initialize_advance() 10 0.005258 0.01075 0.0137 0.40% VisMF::Write(FabArray) 2 0.008816 0.009926 0.01292 0.38% FabArray::setDomainBndry() 41 0.007216 0.01007 0.01279 0.37% FabArray::Saxpy() 20 0.01051 0.0118 0.01271 0.37% Castro::construct_old_gravity_source() 10 0.00643 0.008534 0.008986 0.26% Castro::initMFs() 1 0.006479 0.007182 0.007998 0.23% Gravity::get_old_grav_vector() 10 0.001626 0.00281 0.007213 0.21% Castro::construct_new_source() 50 0.005556 0.005914 0.00616 0.18% main() 1 0.003783 0.004193 0.004444 0.13% Gravity::get_new_grav_vector() 11 0.002821 0.003523 0.003864 0.11% Amr::coarseTimeStep() 10 0.001095 0.001434 0.001927 0.06% Castro::finalize_do_advance() 10 0.0006476 0.001214 0.001385 0.04% AmrLevel::FillPatch() 41 0.0008356 0.001033 0.001127 0.03% Amr::timeStep() 10 0.0001292 0.0001905 0.0004628 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002753 0.0002909 0.00036 0.01% Castro::do_advance_ctu() 10 0.0001395 0.0001813 0.0002141 0.01% Castro::clean_state() 62 0.00014 0.0001568 0.0001806 0.01% StateDataPhysBCFunct::() 41 0.0001067 0.0001267 0.0001487 0.00% FillPatchIterator::FillFromLevel0() 41 9.331e-05 0.0001099 0.0001446 0.00% Castro::do_old_sources() 10 7.986e-05 8.699e-05 0.0001003 0.00% Amr::FinalizeInit() 1 2.928e-06 1.56e-05 9.751e-05 0.00% FabArray::ParallelCopy() 41 8.181e-05 9.31e-05 9.743e-05 0.00% FillPatchSingleLevel 41 5.599e-05 6.654e-05 7.319e-05 0.00% Castro::construct_old_source() 50 4.741e-05 6.298e-05 7.195e-05 0.00% Castro::Castro() 1 5.202e-05 5.925e-05 7.084e-05 0.00% Castro::do_new_sources() 10 5.259e-05 5.883e-05 6.763e-05 0.00% Castro::subcycle_advance_ctu() 10 4.252e-05 4.947e-05 5.896e-05 0.00% Castro::construct_old_gravity() 10 3.197e-05 4.606e-05 5.596e-05 0.00% Castro::advance() 10 3.195e-05 4.295e-05 5.308e-05 0.00% Castro::apply_source_to_state() 20 4.015e-05 4.586e-05 5.07e-05 0.00% Castro::construct_new_gravity() 10 3.181e-05 3.764e-05 5.025e-05 0.00% Amr::defBaseLevel() 1 2.883e-05 3.61e-05 4.27e-05 0.00% Castro::check_for_nan() 20 2.282e-05 2.633e-05 3.444e-05 0.00% Castro::expand_state() 10 1.935e-05 2.323e-05 2.664e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.482e-05 1.881e-05 2.393e-05 0.00% Castro::post_init() 1 1.591e-05 1.72e-05 2.013e-05 0.00% Amr::init() 1 2.004e-06 4.42e-06 1.852e-05 0.00% Castro::post_timestep() 10 1.487e-05 1.622e-05 1.844e-05 0.00% Castro::computeNewDt() 9 8.697e-06 1.113e-05 1.577e-05 0.00% Amr::InitializeInit() 1 3.121e-06 4.062e-06 9.862e-06 0.00% Castro::computeInitialDt() 2 3.221e-06 3.864e-06 4.123e-06 0.00% Amr::initialInit() 1 1.749e-06 1.963e-06 2.509e-06 0.00% Other 262 0.01591 0.01872 0.02159 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.422 3.422 3.424 100.00% Amr::coarseTimeStep() 10 3.216 3.216 3.216 93.94% Amr::timeStep() 10 3.204 3.205 3.205 93.63% Castro::advance() 10 3.188 3.189 3.189 93.15% Castro::subcycle_advance_ctu() 10 3.113 3.117 3.132 91.48% Castro::do_advance_ctu() 10 3.112 3.117 3.132 91.48% Castro::construct_ctu_hydro_source() 10 2.36 2.363 2.365 69.09% Gravity::make_radial_gravity() 21 0.3053 0.3291 0.3456 10.10% AmrLevel::FillPatch() 41 0.1761 0.206 0.2211 6.46% Castro::construct_old_gravity() 10 0.1797 0.202 0.2158 6.30% Gravity::get_old_grav_vector() 10 0.1786 0.2012 0.2152 6.28% Gravity::get_new_grav_vector() 11 0.2096 0.2111 0.2124 6.20% FillPatchIterator::Initialize 41 0.1477 0.1737 0.192 5.61% Castro::initialize_do_advance() 10 0.1541 0.1692 0.1874 5.47% Castro::construct_new_gravity() 10 0.1854 0.1863 0.1873 5.47% Amr::init() 1 0.1778 0.1782 0.1789 5.22% Amr::initialInit() 1 0.1617 0.1626 0.1633 4.77% check_for_negative_density() 10 0.02729 0.1069 0.1632 4.77% FillPatchIterator::FillFromLevel0() 41 0.1084 0.1312 0.1556 4.54% FillPatchSingleLevel 41 0.1083 0.1311 0.1555 4.54% Amr::InitializeInit() 1 0.05928 0.09571 0.1337 3.91% Amr::defBaseLevel() 1 0.05927 0.09571 0.1337 3.90% Castro::expand_state() 10 0.1 0.1134 0.131 3.83% Castro::clean_state() 62 0.1145 0.1183 0.1268 3.70% FabArray::ParallelCopy() 41 0.07927 0.09742 0.1265 3.69% Castro::initData() 1 0.04282 0.07829 0.1157 3.38% Castro::estTimeStep() 21 0.03127 0.06562 0.107 3.13% Amr::FinalizeInit() 1 0.02804 0.06688 0.1039 3.03% Castro::do_old_sources() 10 0.08866 0.099 0.103 3.01% amrex::Copy() 193 0.06497 0.07948 0.09428 2.75% FabArray::ParallelCopy_finish() 41 0.03967 0.05647 0.08771 2.56% Castro::computeInitialDt() 2 0.002153 0.04054 0.07758 2.27% Castro::computeTemp() 63 0.06416 0.06688 0.07503 2.19% FabArray::setVal() 143 0.05211 0.06623 0.07453 2.18% Castro::initialize_advance() 10 0.05315 0.06821 0.07299 2.13% Castro::do_new_sources() 10 0.05924 0.0627 0.06778 1.98% Castro::reset_internal_energy(MultiFab) 63 0.04597 0.04762 0.05386 1.57% Castro::reset_internal_energy(Fab) 1008 0.04569 0.04733 0.0535 1.56% Castro::normalize_species() 62 0.04477 0.04607 0.05049 1.47% StateDataPhysBCFunct::() 41 0.02895 0.03356 0.04494 1.31% StateData::FillBoundary(geom) 41 0.02883 0.03343 0.04479 1.31% FabArray::ParallelCopy_nowait() 41 0.0387 0.04086 0.04236 1.24% Amr::writePlotFile() 2 0.03905 0.03932 0.03977 1.16% Castro::construct_new_source() 50 0.02859 0.03004 0.03168 0.93% Gravity::interpolate_monopole_grav() 21 0.02657 0.02699 0.02766 0.81% Castro::post_init() 1 0.02573 0.02592 0.02609 0.76% Castro::construct_new_gravity_source() 10 0.02293 0.02412 0.02552 0.75% Castro::finalize_do_advance() 10 0.01184 0.01774 0.02217 0.65% Castro::post_timestep() 10 0.01573 0.01595 0.01632 0.48% UtilCreateCleanDirectory() 2 5.76e-07 0.002016 0.01612 0.47% Castro::check_for_nan() 20 0.01114 0.01243 0.01562 0.46% MultiFab::contains_nan() 20 0.01112 0.0124 0.01558 0.46% VisMF::Write(FabArray) 2 0.008816 0.009926 0.01292 0.38% FabArray::setDomainBndry() 41 0.007216 0.01007 0.01279 0.37% Castro::apply_source_to_state() 20 0.01055 0.01185 0.01276 0.37% FabArray::Saxpy() 20 0.01051 0.0118 0.01271 0.37% Castro::Castro() 1 0.009772 0.01085 0.01171 0.34% Castro::construct_old_source() 50 0.006477 0.008597 0.009052 0.26% Castro::construct_old_gravity_source() 10 0.00643 0.008534 0.008986 0.26% Castro::computeNewDt() 9 0.008537 0.008564 0.008587 0.25% Castro::initMFs() 1 0.006479 0.007182 0.007998 0.23% AmrLevel::AmrLevel(dm) 1 0.005443 0.00603 0.006684 0.20% Other 262 0.02045 0.02414 0.02801 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 35 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8670 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6756 KiB 6764 KiB 6769 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4544 KiB 4550 KiB 4573 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 193 KiB 226 KiB 250 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2790 KiB 2794 KiB 2795 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 227 KiB 245 KiB 257 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 42 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 79 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 75 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.10-28-g82fa0de69508) finalized