Initializing AMReX (25.10-30-g124c03476f9c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.10-30-g124c03476f9c) initialized Starting run at 05:21:24 UTC on 2025-10-23. Successfully read inputs file ... Castro git describe: 25.10-5-g3a58e12b1 AMReX git describe: 25.10-30-g124c03476 Microphysics git describe: 25.10-4-gcc0c379f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015227352 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.343046179 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.337850711 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.325353815 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.320936549 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.372289708 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.307998261 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297578415 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.296851151 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.299255274 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298844527 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007781991 seconds Ending run at 05:21:27 UTC on 2025-10-23. Run time = 3.380477778 Run time without initialization = 3.213236653 Average number of zones advanced per microsecond: 0.816 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3794 ... 3.3803 ... 3.3811 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2045 2.2376 2.2821 67.50% Gravity::make_radial_gravity() 21 0.2903 0.2968 0.3061 9.05% check_for_negative_density() 10 0.03131 0.08048 0.1174 3.47% Castro::initData() 1 0.03775 0.07223 0.1019 3.01% Castro::estTimeStep() 21 0.02342 0.05616 0.09471 2.80% amrex::Copy() 193 0.08138 0.08623 0.0946 2.80% FabArray::setVal() 143 0.06851 0.07093 0.07468 2.21% FabArray::ParallelCopy_finish() 41 0.04233 0.05808 0.07415 2.19% Castro::normalize_species() 62 0.04442 0.0464 0.05079 1.50% Castro::reset_internal_energy(Fab) 1008 0.04489 0.04634 0.04734 1.40% FillPatchIterator::Initialize 41 0.02955 0.03592 0.04588 1.36% FabArray::ParallelCopy_nowait() 41 0.04025 0.04335 0.04584 1.36% StateData::FillBoundary(geom) 41 0.02944 0.03231 0.03553 1.05% Castro::construct_new_gravity_source() 10 0.02363 0.02522 0.02742 0.81% Gravity::interpolate_monopole_grav() 21 0.02652 0.02675 0.027 0.80% Castro::computeTemp() 63 0.01804 0.01837 0.01879 0.56% Castro::initialize_do_advance() 10 0.01652 0.01775 0.01833 0.54% FabArray::setDomainBndry() 41 0.007665 0.01202 0.01701 0.50% Castro::initialize_advance() 10 0.01036 0.01241 0.01475 0.44% FabArray::Saxpy() 20 0.01232 0.01345 0.01436 0.42% MultiFab::contains_nan() 20 0.01066 0.01157 0.01305 0.39% VisMF::Write(FabArray) 2 0.009437 0.009974 0.01262 0.37% Amr::writePlotFile() 2 0.007426 0.01038 0.01109 0.33% Castro::construct_old_gravity_source() 10 0.01011 0.01043 0.01079 0.32% Castro::initMFs() 1 0.006629 0.006945 0.008707 0.26% Castro::enforce_min_density() 62 0.005804 0.006121 0.006721 0.20% Castro::construct_new_source() 50 0.00608 0.006222 0.006425 0.19% main() 1 0.003931 0.004233 0.004686 0.14% Gravity::get_new_grav_vector() 11 0.003507 0.003888 0.004107 0.12% Amr::coarseTimeStep() 10 0.001131 0.002143 0.002803 0.08% Gravity::get_old_grav_vector() 10 0.001631 0.002278 0.00272 0.08% Castro::finalize_do_advance() 10 0.001121 0.001222 0.001374 0.04% AmrLevel::FillPatch() 41 0.001132 0.001268 0.001372 0.04% Amr::timeStep() 10 0.0001476 0.0001944 0.0003964 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002655 0.0002779 0.000303 0.01% Castro::do_advance_ctu() 10 0.0001583 0.000177 0.0002184 0.01% Castro::clean_state() 62 0.0001397 0.0001592 0.0001797 0.01% StateDataPhysBCFunct::() 41 0.0001214 0.0001409 0.0001744 0.01% FillPatchIterator::FillFromLevel0() 41 9.353e-05 0.000106 0.0001283 0.00% FabArray::ParallelCopy() 41 9.139e-05 0.0001009 0.0001115 0.00% Castro::do_old_sources() 10 8.039e-05 9.118e-05 0.0001094 0.00% FillPatchSingleLevel 41 6.513e-05 7.744e-05 0.0001053 0.00% Castro::Castro() 1 4.729e-05 8.014e-05 0.0001026 0.00% Castro::construct_old_source() 50 5.865e-05 7.357e-05 8.206e-05 0.00% Amr::FinalizeInit() 1 3.582e-06 1.371e-05 7.371e-05 0.00% Castro::do_new_sources() 10 5.909e-05 6.292e-05 6.925e-05 0.00% Castro::subcycle_advance_ctu() 10 4.458e-05 5.241e-05 6.203e-05 0.00% Castro::advance() 10 3.658e-05 4.365e-05 6.105e-05 0.00% Castro::apply_source_to_state() 20 4.055e-05 5.035e-05 5.746e-05 0.00% Castro::construct_old_gravity() 10 3.599e-05 4.042e-05 5.197e-05 0.00% Castro::construct_new_gravity() 10 2.976e-05 3.647e-05 4.34e-05 0.00% Amr::defBaseLevel() 1 2.843e-05 3.577e-05 4.339e-05 0.00% Castro::check_for_nan() 20 2.552e-05 2.764e-05 3.132e-05 0.00% Castro::expand_state() 10 1.916e-05 2.293e-05 2.455e-05 0.00% Castro::post_init() 1 1.466e-05 1.74e-05 2.157e-05 0.00% Castro::post_timestep() 10 1.505e-05 1.806e-05 2.066e-05 0.00% Castro::computeNewDt() 9 7.935e-06 8.846e-06 9.83e-06 0.00% Amr::initialInit() 1 1.717e-06 3.787e-06 8.767e-06 0.00% Amr::InitializeInit() 1 3.076e-06 4.091e-06 8.742e-06 0.00% Castro::computeInitialDt() 2 3.409e-06 3.958e-06 4.638e-06 0.00% Amr::init() 1 1.963e-06 2.293e-06 2.881e-06 0.00% Other 203 0.0105 0.01291 0.01485 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.379 3.38 3.381 100.00% Amr::coarseTimeStep() 10 3.201 3.201 3.201 94.67% Amr::timeStep() 10 3.188 3.189 3.19 94.35% Castro::advance() 10 3.173 3.173 3.173 93.86% Castro::subcycle_advance_ctu() 10 3.094 3.096 3.098 91.62% Castro::do_advance_ctu() 10 3.094 3.096 3.098 91.62% Castro::construct_ctu_hydro_source() 10 2.331 2.339 2.348 69.44% Gravity::make_radial_gravity() 21 0.3074 0.314 0.3217 9.51% AmrLevel::FillPatch() 41 0.2066 0.2191 0.2294 6.78% Gravity::get_new_grav_vector() 11 0.2099 0.2116 0.2131 6.30% Castro::construct_old_gravity() 10 0.1814 0.1864 0.1936 5.73% Gravity::get_old_grav_vector() 10 0.1806 0.1857 0.1929 5.70% FillPatchIterator::Initialize 41 0.175 0.1822 0.1894 5.60% Castro::construct_new_gravity() 10 0.1863 0.1875 0.1882 5.57% Castro::initialize_do_advance() 10 0.1628 0.1691 0.1738 5.14% Amr::init() 1 0.1664 0.1672 0.1676 4.96% Amr::initialInit() 1 0.151 0.1517 0.1522 4.50% FillPatchIterator::FillFromLevel0() 41 0.1199 0.1343 0.1444 4.27% FillPatchSingleLevel 41 0.1198 0.1342 0.1443 4.27% Amr::InitializeInit() 1 0.05842 0.09378 0.1239 3.67% Amr::defBaseLevel() 1 0.05842 0.09378 0.1239 3.67% Castro::clean_state() 62 0.1134 0.1168 0.1215 3.59% Castro::do_old_sources() 10 0.1038 0.1144 0.1203 3.56% Castro::expand_state() 10 0.1069 0.1138 0.1193 3.53% check_for_negative_density() 10 0.03131 0.08048 0.1174 3.47% FabArray::ParallelCopy() 41 0.08838 0.1016 0.1147 3.39% Castro::initData() 1 0.04163 0.07617 0.1057 3.13% Castro::estTimeStep() 21 0.02342 0.05616 0.09471 2.80% amrex::Copy() 193 0.08138 0.08623 0.0946 2.80% Amr::FinalizeInit() 1 0.02824 0.05791 0.09269 2.74% Castro::initialize_advance() 10 0.07196 0.07349 0.07575 2.24% FabArray::setVal() 143 0.06851 0.07093 0.07468 2.21% FabArray::ParallelCopy_finish() 41 0.04233 0.05808 0.07415 2.19% Castro::do_new_sources() 10 0.06188 0.06572 0.07036 2.08% Castro::computeInitialDt() 2 0.002137 0.03187 0.06664 1.97% Castro::computeTemp() 63 0.06322 0.06498 0.06641 1.96% Castro::normalize_species() 62 0.04442 0.0464 0.05079 1.50% Castro::reset_internal_energy(MultiFab) 63 0.04517 0.04661 0.04762 1.41% Castro::reset_internal_energy(Fab) 1008 0.04489 0.04634 0.04734 1.40% FabArray::ParallelCopy_nowait() 41 0.04037 0.04346 0.04595 1.36% StateDataPhysBCFunct::() 41 0.02961 0.03245 0.0357 1.06% StateData::FillBoundary(geom) 41 0.02944 0.03231 0.03553 1.05% Castro::construct_new_source() 50 0.02971 0.03144 0.03373 1.00% Castro::construct_new_gravity_source() 10 0.02363 0.02522 0.02742 0.81% Gravity::interpolate_monopole_grav() 21 0.02652 0.02675 0.027 0.80% Castro::post_init() 1 0.02518 0.02546 0.02562 0.76% Amr::writePlotFile() 2 0.02327 0.02334 0.02351 0.70% Castro::finalize_do_advance() 10 0.01192 0.01696 0.02087 0.62% FabArray::setDomainBndry() 41 0.007665 0.01202 0.01701 0.50% Castro::post_timestep() 10 0.01529 0.01578 0.01635 0.48% Castro::apply_source_to_state() 20 0.01236 0.0135 0.01441 0.43% FabArray::Saxpy() 20 0.01232 0.01345 0.01436 0.42% Castro::check_for_nan() 20 0.01069 0.0116 0.01307 0.39% MultiFab::contains_nan() 20 0.01066 0.01157 0.01305 0.39% VisMF::Write(FabArray) 2 0.009437 0.009974 0.01262 0.37% Castro::Castro() 1 0.01062 0.01111 0.01191 0.35% Castro::construct_old_source() 50 0.01017 0.01051 0.01087 0.32% Castro::construct_old_gravity_source() 10 0.01011 0.01043 0.01079 0.32% Castro::initMFs() 1 0.006629 0.006945 0.008707 0.26% Castro::computeNewDt() 9 0.008556 0.008571 0.008586 0.25% Castro::enforce_min_density() 62 0.005804 0.006121 0.006721 0.20% Other 203 0.02062 0.0243 0.02789 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 38 B 50 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8669 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6774 KiB 6781 KiB 6784 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7131 KiB 7139 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4571 KiB 4575 KiB 4579 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 227 KiB 240 KiB 251 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2812 KiB 2815 KiB 2816 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 231 KiB 236 KiB 241 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 44 KiB 49 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.10-30-g124c03476f9c) finalized