Initializing AMReX (25.10-31-g9a2bff00537e)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.10-31-g9a2bff00537e) initialized Starting run at 05:21:40 UTC on 2025-10-24. Successfully read inputs file ... Castro git describe: 25.10-5-g3a58e12b1 AMReX git describe: 25.10-31-g9a2bff005 Microphysics git describe: 25.10-4-gcc0c379f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015745967 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.337991679 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.322783644 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.321657551 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.363869503 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.389460228 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.304597649 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.296252204 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297811247 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.297617619 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.297741369 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007643311 seconds Ending run at 05:21:43 UTC on 2025-10-24. Run time = 3.421409309 Run time without initialization = 3.242360496 Average number of zones advanced per microsecond: 0.808 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4195 ... 3.4205 ... 3.4214 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1759 2.2268 2.2925 67.00% Gravity::make_radial_gravity() 21 0.295 0.303 0.3125 9.13% check_for_negative_density() 10 0.04338 0.1114 0.1644 4.81% FabArray::ParallelCopy_finish() 41 0.04968 0.08219 0.1244 3.64% Castro::initData() 1 0.0401 0.07589 0.1107 3.23% Castro::estTimeStep() 21 0.02513 0.06304 0.1058 3.09% amrex::Copy() 193 0.06348 0.07721 0.08323 2.43% FabArray::setVal() 143 0.05582 0.06777 0.08218 2.40% Castro::normalize_species() 62 0.04629 0.05372 0.06043 1.77% Castro::reset_internal_energy(Fab) 1008 0.04447 0.04707 0.04824 1.41% FabArray::ParallelCopy_nowait() 41 0.03483 0.04083 0.04339 1.27% FillPatchIterator::Initialize 41 0.02775 0.0326 0.03805 1.11% StateData::FillBoundary(geom) 41 0.02921 0.03146 0.03475 1.02% Gravity::interpolate_monopole_grav() 21 0.02651 0.02675 0.02729 0.80% Castro::construct_new_gravity_source() 10 0.02274 0.02368 0.02604 0.76% Castro::initialize_do_advance() 10 0.01156 0.01591 0.02115 0.62% Castro::computeTemp() 63 0.018 0.01854 0.01912 0.56% FabArray::Saxpy() 20 0.01065 0.01256 0.01502 0.44% Castro::initialize_advance() 10 0.005323 0.01096 0.01404 0.41% MultiFab::contains_nan() 20 0.01125 0.01177 0.01355 0.40% VisMF::Write(FabArray) 2 0.00907 0.009732 0.01336 0.39% FabArray::setDomainBndry() 41 0.007 0.009612 0.01224 0.36% Castro::construct_old_gravity_source() 10 0.006143 0.009105 0.01186 0.35% Amr::writePlotFile() 2 0.008088 0.01062 0.01165 0.34% Castro::initMFs() 1 0.006373 0.006969 0.007565 0.22% Castro::construct_new_source() 50 0.005641 0.006304 0.006554 0.19% main() 1 0.003738 0.004224 0.004457 0.13% Amr::coarseTimeStep() 10 0.001612 0.003104 0.003935 0.12% Gravity::get_new_grav_vector() 11 0.002702 0.003158 0.003535 0.10% Gravity::get_old_grav_vector() 10 0.001576 0.001964 0.002317 0.07% Castro::finalize_do_advance() 10 0.0005935 0.001094 0.001249 0.04% AmrLevel::FillPatch() 41 0.0008489 0.0008982 0.001026 0.03% Amr::timeStep() 10 0.0001427 0.0001883 0.0003996 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002687 0.0002822 0.0003079 0.01% Castro::do_advance_ctu() 10 0.0001525 0.0001842 0.000209 0.01% Castro::clean_state() 62 0.0001385 0.0001613 0.0001908 0.01% StateDataPhysBCFunct::() 41 0.0001169 0.000142 0.0001875 0.01% Castro::do_old_sources() 10 7.403e-05 9.224e-05 0.00015 0.00% Castro::construct_old_source() 50 5.431e-05 7.34e-05 0.0001277 0.00% FillPatchIterator::FillFromLevel0() 41 9.431e-05 0.000102 0.0001157 0.00% FabArray::ParallelCopy() 41 8.991e-05 0.0001015 0.000111 0.00% Castro::subcycle_advance_ctu() 10 4.495e-05 5.526e-05 8.91e-05 0.00% Amr::FinalizeInit() 1 3.078e-06 1.44e-05 8.91e-05 0.00% FillPatchSingleLevel 41 6.245e-05 6.983e-05 8.272e-05 0.00% Castro::Castro() 1 4.963e-05 5.955e-05 7.697e-05 0.00% Castro::advance() 10 3.798e-05 4.516e-05 6.807e-05 0.00% Castro::construct_old_gravity() 10 3.233e-05 4.532e-05 6.422e-05 0.00% Castro::do_new_sources() 10 5.104e-05 5.826e-05 6.276e-05 0.00% Castro::apply_source_to_state() 20 4.457e-05 5.001e-05 5.635e-05 0.00% Castro::construct_new_gravity() 10 3.393e-05 3.671e-05 3.901e-05 0.00% Amr::defBaseLevel() 1 3.051e-05 3.181e-05 3.399e-05 0.00% Castro::expand_state() 10 2.105e-05 2.577e-05 3.346e-05 0.00% Castro::check_for_nan() 20 2.683e-05 2.9e-05 3.079e-05 0.00% Castro::post_timestep() 10 1.428e-05 1.692e-05 2.213e-05 0.00% Castro::post_init() 1 1.429e-05 1.723e-05 2.177e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.461e-05 1.747e-05 2.033e-05 0.00% Castro::computeNewDt() 9 8.443e-06 8.933e-06 1.005e-05 0.00% Amr::InitializeInit() 1 3.234e-06 4.14e-06 8.964e-06 0.00% Castro::computeInitialDt() 2 2.925e-06 3.408e-06 4.009e-06 0.00% Amr::init() 1 1.746e-06 2.183e-06 2.434e-06 0.00% Amr::initialInit() 1 1.541e-06 1.843e-06 2.286e-06 0.00% Other 264 0.01494 0.01861 0.02126 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.419 3.42 3.421 100.00% Amr::coarseTimeStep() 10 3.23 3.23 3.23 94.41% Amr::timeStep() 10 3.217 3.218 3.219 94.08% Castro::advance() 10 3.199 3.2 3.2 93.53% Castro::subcycle_advance_ctu() 10 3.112 3.126 3.142 91.84% Castro::do_advance_ctu() 10 3.112 3.126 3.142 91.84% Castro::construct_ctu_hydro_source() 10 2.359 2.361 2.363 69.06% Gravity::make_radial_gravity() 21 0.3104 0.3183 0.3266 9.55% AmrLevel::FillPatch() 41 0.2088 0.229 0.2498 7.30% FillPatchIterator::Initialize 41 0.1763 0.1972 0.2238 6.54% Gravity::get_new_grav_vector() 11 0.2082 0.2099 0.212 6.20% Castro::initialize_do_advance() 10 0.174 0.1852 0.1964 5.74% Castro::construct_old_gravity() 10 0.1843 0.19 0.1961 5.73% Gravity::get_old_grav_vector() 10 0.1835 0.1892 0.1955 5.71% FillPatchIterator::FillFromLevel0() 41 0.1283 0.155 0.1891 5.53% FillPatchSingleLevel 41 0.1282 0.1549 0.189 5.52% Castro::construct_new_gravity() 10 0.1831 0.1845 0.1858 5.43% Amr::init() 1 0.1775 0.1779 0.1787 5.22% check_for_negative_density() 10 0.04338 0.1114 0.1644 4.81% Amr::initialInit() 1 0.1617 0.1626 0.1639 4.79% FabArray::ParallelCopy() 41 0.09326 0.1232 0.1595 4.66% Castro::expand_state() 10 0.1157 0.1321 0.1466 4.28% Amr::InitializeInit() 1 0.06184 0.09759 0.1328 3.88% Amr::defBaseLevel() 1 0.06183 0.09759 0.1328 3.88% Castro::clean_state() 62 0.1184 0.1247 0.1323 3.87% FabArray::ParallelCopy_finish() 41 0.04968 0.08219 0.1244 3.64% Castro::initData() 1 0.04458 0.08021 0.1148 3.35% Castro::do_old_sources() 10 0.1036 0.1068 0.1098 3.21% Castro::estTimeStep() 21 0.02513 0.06304 0.1058 3.09% Amr::FinalizeInit() 1 0.02982 0.06503 0.1008 2.95% Castro::initialize_advance() 10 0.05365 0.07091 0.08483 2.48% amrex::Copy() 193 0.06348 0.07721 0.08323 2.43% FabArray::setVal() 143 0.05582 0.06777 0.08218 2.40% Castro::computeInitialDt() 2 0.002277 0.03788 0.07425 2.17% Castro::do_new_sources() 10 0.05907 0.06482 0.06959 2.03% Castro::computeTemp() 63 0.06302 0.06589 0.06752 1.97% Castro::normalize_species() 62 0.04629 0.05372 0.06043 1.77% Castro::reset_internal_energy(MultiFab) 63 0.04475 0.04735 0.04853 1.42% Castro::reset_internal_energy(Fab) 1008 0.04447 0.04707 0.04824 1.41% FabArray::ParallelCopy_nowait() 41 0.03495 0.04094 0.04349 1.27% StateDataPhysBCFunct::() 41 0.02939 0.0316 0.03489 1.02% StateData::FillBoundary(geom) 41 0.02921 0.03146 0.03475 1.02% Castro::construct_new_source() 50 0.02838 0.02999 0.03259 0.95% Gravity::interpolate_monopole_grav() 21 0.02651 0.02675 0.02729 0.80% Castro::post_init() 1 0.02534 0.02633 0.02717 0.79% Castro::construct_new_gravity_source() 10 0.02274 0.02368 0.02604 0.76% Amr::writePlotFile() 2 0.02246 0.02306 0.02364 0.69% Castro::finalize_do_advance() 10 0.01271 0.01779 0.02364 0.69% Castro::post_timestep() 10 0.01639 0.01752 0.019 0.56% Castro::apply_source_to_state() 20 0.0107 0.01262 0.01508 0.44% FabArray::Saxpy() 20 0.01065 0.01256 0.01502 0.44% Castro::check_for_nan() 20 0.01128 0.0118 0.01358 0.40% MultiFab::contains_nan() 20 0.01125 0.01177 0.01355 0.40% VisMF::Write(FabArray) 2 0.00907 0.009732 0.01336 0.39% FabArray::setDomainBndry() 41 0.007 0.009612 0.01224 0.36% Castro::construct_old_source() 50 0.006202 0.009179 0.01198 0.35% Castro::construct_old_gravity_source() 10 0.006143 0.009105 0.01186 0.35% Castro::Castro() 1 0.009718 0.01088 0.01171 0.34% Castro::computeNewDt() 9 0.008464 0.008476 0.008487 0.25% Castro::initMFs() 1 0.006373 0.006969 0.007565 0.22% AmrLevel::AmrLevel(dm) 1 0.005494 0.005963 0.006308 0.18% Other 264 0.0198 0.02442 0.02836 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 35 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8670 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6759 KiB 6764 KiB 6766 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4546 KiB 4565 KiB 4584 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 231 KiB 258 KiB 284 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2802 KiB 2806 KiB 2807 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 231 KiB 237 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 41 KiB 57 KiB 75 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 78 KiB 78 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 71 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.10-31-g9a2bff00537e) finalized