Initializing AMReX (25.10-33-ga3892dee9444)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.10-33-ga3892dee9444) initialized Starting run at 05:18:14 UTC on 2025-10-27. Successfully read inputs file ... Castro git describe: 25.10-6-ge16da8f91 AMReX git describe: 25.10-33-ga3892dee9 Microphysics git describe: 25.10-5-g7cc5162f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015276311 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.348945726 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.353973663 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.349109127 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.336263453 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.364071275 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.301844592 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.299515899 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299085851 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.297423798 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.301666236 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008331552 seconds Ending run at 05:18:17 UTC on 2025-10-27. Run time = 3.439047652 Run time without initialization = 3.265847793 Average number of zones advanced per microsecond: 0.803 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.4375 ... 3.4383 ... 3.4392 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1850 2.2265 2.2611 65.75% Gravity::make_radial_gravity() 21 0.3024 0.3079 0.3171 9.22% check_for_negative_density() 10 0.06971 0.1068 0.1522 4.42% Castro::initData() 1 0.03844 0.07391 0.1049 3.05% Castro::estTimeStep() 21 0.03033 0.06529 0.09942 2.89% amrex::Copy() 193 0.08003 0.08329 0.08981 2.61% FabArray::setVal() 143 0.06767 0.07397 0.08525 2.48% FabArray::ParallelCopy_finish() 41 0.04328 0.06434 0.07893 2.30% Castro::normalize_species() 62 0.04906 0.05707 0.06583 1.91% Castro::reset_internal_energy(Fab) 1008 0.04413 0.04784 0.04999 1.45% FabArray::ParallelCopy_nowait() 41 0.04111 0.04266 0.04372 1.27% FillPatchIterator::Initialize 41 0.0309 0.03546 0.03867 1.12% StateData::FillBoundary(geom) 41 0.02989 0.03243 0.03477 1.01% Castro::construct_new_gravity_source() 10 0.02356 0.02526 0.03015 0.88% Gravity::interpolate_monopole_grav() 21 0.02639 0.0268 0.02714 0.79% Castro::initialize_do_advance() 10 0.01472 0.01889 0.0232 0.67% Castro::computeTemp() 63 0.0179 0.01874 0.01915 0.56% Castro::initialize_advance() 10 0.01039 0.01184 0.01378 0.40% VisMF::Write(FabArray) 2 0.009148 0.009917 0.0133 0.39% FabArray::setDomainBndry() 41 0.008224 0.01085 0.01307 0.38% FabArray::Saxpy() 20 0.01206 0.01244 0.01279 0.37% Amr::coarseTimeStep() 10 0.005272 0.008184 0.01195 0.35% MultiFab::contains_nan() 20 0.0109 0.01132 0.01178 0.34% Amr::writePlotFile() 2 0.007252 0.01086 0.01177 0.34% Castro::construct_old_gravity_source() 10 0.008909 0.009517 0.01001 0.29% Castro::initMFs() 1 0.006371 0.006935 0.007807 0.23% Castro::enforce_min_density() 62 0.005633 0.006109 0.00655 0.19% Castro::construct_new_source() 50 0.006059 0.006244 0.006352 0.18% main() 1 0.003672 0.003949 0.004215 0.12% Gravity::get_new_grav_vector() 11 0.002957 0.003442 0.003767 0.11% Gravity::get_old_grav_vector() 10 0.001701 0.002144 0.002566 0.07% Castro::finalize_do_advance() 10 0.001238 0.001356 0.001489 0.04% AmrLevel::FillPatch() 41 0.0009075 0.0009939 0.001229 0.04% Amr::timeStep() 10 0.0001534 0.0002034 0.0004369 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002736 0.0002908 0.000313 0.01% Castro::do_advance_ctu() 10 0.0001529 0.000175 0.0001988 0.01% Castro::clean_state() 62 0.0001506 0.0001606 0.000179 0.01% StateDataPhysBCFunct::() 41 0.0001106 0.0001339 0.0001585 0.00% FillPatchIterator::FillFromLevel0() 41 9.438e-05 0.0001031 0.0001109 0.00% FabArray::ParallelCopy() 41 8.542e-05 9.9e-05 0.0001086 0.00% Castro::do_old_sources() 10 7.659e-05 9.007e-05 9.818e-05 0.00% Castro::Castro() 1 4.678e-05 6.837e-05 9.635e-05 0.00% Amr::FinalizeInit() 1 3.282e-06 1.488e-05 8.927e-05 0.00% Castro::construct_old_source() 50 6.648e-05 7.418e-05 8.19e-05 0.00% FillPatchSingleLevel 41 6.701e-05 7.025e-05 7.383e-05 0.00% Castro::do_new_sources() 10 5.357e-05 6.109e-05 7.09e-05 0.00% Castro::subcycle_advance_ctu() 10 4.858e-05 5.763e-05 6.975e-05 0.00% Castro::computeNewDt() 9 8.769e-06 1.522e-05 5.692e-05 0.00% Castro::apply_source_to_state() 20 4.273e-05 4.846e-05 5.537e-05 0.00% Castro::advance() 10 3.733e-05 4.255e-05 4.916e-05 0.00% Amr::defBaseLevel() 1 2.964e-05 3.577e-05 4.801e-05 0.00% Castro::construct_old_gravity() 10 3.501e-05 3.97e-05 4.507e-05 0.00% Castro::construct_new_gravity() 10 3.409e-05 3.896e-05 4.356e-05 0.00% Castro::check_for_nan() 20 2.505e-05 2.736e-05 2.942e-05 0.00% Castro::expand_state() 10 2.295e-05 2.55e-05 2.884e-05 0.00% Castro::post_timestep() 10 1.581e-05 2.109e-05 2.883e-05 0.00% Castro::post_init() 1 1.506e-05 1.718e-05 2.157e-05 0.00% Amr::InitializeInit() 1 2.663e-06 4.099e-06 8.529e-06 0.00% Castro::computeInitialDt() 2 2.926e-06 3.459e-06 3.932e-06 0.00% Amr::init() 1 1.993e-06 2.559e-06 2.96e-06 0.00% Amr::initialInit() 1 1.478e-06 2.193e-06 2.896e-06 0.00% Other 203 0.01052 0.01306 0.01505 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.438 3.438 3.439 100.00% Amr::coarseTimeStep() 10 3.253 3.253 3.253 94.60% Amr::timeStep() 10 3.229 3.233 3.236 94.08% Castro::advance() 10 3.212 3.213 3.215 93.48% Castro::subcycle_advance_ctu() 10 3.124 3.132 3.14 91.29% Castro::do_advance_ctu() 10 3.124 3.132 3.14 91.29% Castro::construct_ctu_hydro_source() 10 2.354 2.357 2.359 68.60% Gravity::make_radial_gravity() 21 0.319 0.3245 0.332 9.65% AmrLevel::FillPatch() 41 0.1978 0.22 0.2339 6.80% Gravity::get_new_grav_vector() 11 0.2158 0.217 0.2185 6.35% Castro::construct_old_gravity() 10 0.1886 0.1928 0.1989 5.78% FillPatchIterator::Initialize 41 0.1654 0.1862 0.1987 5.78% Gravity::get_old_grav_vector() 10 0.1877 0.1918 0.1976 5.75% Castro::initialize_do_advance() 10 0.1726 0.1847 0.1949 5.67% Castro::construct_new_gravity() 10 0.1898 0.1911 0.1926 5.60% Amr::init() 1 0.1716 0.1723 0.173 5.03% Amr::initialInit() 1 0.1561 0.157 0.1577 4.59% check_for_negative_density() 10 0.06971 0.1068 0.1522 4.42% FillPatchIterator::FillFromLevel0() 41 0.117 0.1399 0.152 4.42% FillPatchSingleLevel 41 0.1169 0.1398 0.1519 4.42% Castro::expand_state() 10 0.1119 0.129 0.1428 4.15% Castro::clean_state() 62 0.1188 0.1292 0.1371 3.99% Amr::InitializeInit() 1 0.0607 0.09585 0.127 3.69% Amr::defBaseLevel() 1 0.06069 0.09584 0.127 3.69% FabArray::ParallelCopy() 41 0.08518 0.1072 0.1218 3.54% Castro::initData() 1 0.04263 0.07848 0.1095 3.18% Castro::do_old_sources() 10 0.0953 0.1006 0.1046 3.04% Castro::estTimeStep() 21 0.03033 0.06529 0.09942 2.89% Amr::FinalizeInit() 1 0.02987 0.0611 0.09594 2.79% amrex::Copy() 193 0.08003 0.08329 0.08981 2.61% FabArray::setVal() 143 0.06767 0.07397 0.08525 2.48% Castro::initialize_advance() 10 0.06926 0.07707 0.08472 2.46% FabArray::ParallelCopy_finish() 41 0.04328 0.06434 0.07893 2.30% Castro::do_new_sources() 10 0.06492 0.0678 0.07073 2.06% Castro::computeTemp() 63 0.06232 0.06686 0.06945 2.02% Castro::computeInitialDt() 2 0.002169 0.03316 0.06782 1.97% Castro::normalize_species() 62 0.04906 0.05707 0.06583 1.91% Castro::reset_internal_energy(MultiFab) 63 0.04441 0.04813 0.0503 1.46% Castro::reset_internal_energy(Fab) 1008 0.04413 0.04784 0.04999 1.45% FabArray::ParallelCopy_nowait() 41 0.04123 0.04277 0.04382 1.27% Castro::construct_new_source() 50 0.02983 0.0315 0.03621 1.05% StateDataPhysBCFunct::() 41 0.03002 0.03256 0.03489 1.01% StateData::FillBoundary(geom) 41 0.02989 0.03243 0.03477 1.01% Castro::construct_new_gravity_source() 10 0.02356 0.02526 0.03015 0.88% Gravity::interpolate_monopole_grav() 21 0.02639 0.0268 0.02714 0.79% Castro::post_init() 1 0.0263 0.02684 0.02709 0.79% Castro::finalize_do_advance() 10 0.01742 0.02203 0.02692 0.78% Amr::writePlotFile() 2 0.02352 0.02378 0.02401 0.70% Castro::post_timestep() 10 0.01629 0.01905 0.02034 0.59% VisMF::Write(FabArray) 2 0.009148 0.009917 0.0133 0.39% FabArray::setDomainBndry() 41 0.008224 0.01085 0.01307 0.38% Castro::apply_source_to_state() 20 0.01211 0.01249 0.01284 0.37% FabArray::Saxpy() 20 0.01206 0.01244 0.01279 0.37% Castro::check_for_nan() 20 0.01093 0.01135 0.0118 0.34% MultiFab::contains_nan() 20 0.0109 0.01132 0.01178 0.34% Castro::Castro() 1 0.01015 0.01082 0.01166 0.34% Castro::computeNewDt() 9 0.01144 0.01147 0.01149 0.33% Castro::construct_old_source() 50 0.008983 0.009591 0.01008 0.29% Castro::construct_old_gravity_source() 10 0.008909 0.009517 0.01001 0.29% Castro::initMFs() 1 0.006371 0.006935 0.007807 0.23% Castro::enforce_min_density() 62 0.005633 0.006109 0.00655 0.19% Other 203 0.02112 0.02563 0.03064 0.89% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 36 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8671 KiB 8676 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6770 KiB 6777 KiB 6780 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4533 KiB 4550 KiB 4562 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 217 KiB 246 KiB 262 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2798 KiB 2803 KiB 2805 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 236 KiB 240 KiB 246 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 49 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 81 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 71 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.10-33-ga3892dee9444) finalized