Initializing AMReX (25.10-36-gfa7a06df7fb5)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.10-36-gfa7a06df7fb5) initialized Starting run at 05:31:22 UTC on 2025-10-29. Successfully read inputs file ... Castro git describe: 25.10-7-ged95a91be AMReX git describe: 25.10-36-gfa7a06df7 Microphysics git describe: 25.10-11-g1a162ea4 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014237173 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.340752397 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.344422578 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.313989954 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.312352645 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.362211715 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.310463456 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.298545804 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.298220656 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.298247415 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.299280065 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.022048896 seconds Ending run at 05:31:25 UTC on 2025-10-29. Run time = 3.369677618 Run time without initialization = 3.205270443 Average number of zones advanced per microsecond: 0.818 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3687 ... 3.3690 ... 3.3697 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1540 2.2283 2.2967 68.16% Gravity::make_radial_gravity() 21 0.2887 0.2974 0.306 9.08% check_for_negative_density() 10 0.03343 0.1064 0.1839 5.46% Castro::initData() 1 0.03728 0.07051 0.1012 3.00% Castro::estTimeStep() 21 0.02379 0.06027 0.09655 2.87% amrex::Copy() 193 0.06493 0.07777 0.08725 2.59% FabArray::ParallelCopy_finish() 41 0.03586 0.04798 0.08634 2.56% FabArray::setVal() 143 0.05553 0.06564 0.07143 2.12% Castro::reset_internal_energy(Fab) 1008 0.0395 0.04353 0.04875 1.45% Castro::normalize_species() 62 0.04455 0.04546 0.0468 1.39% FabArray::ParallelCopy_nowait() 41 0.03694 0.04097 0.0425 1.26% FillPatchIterator::Initialize 41 0.02801 0.03242 0.03502 1.04% StateData::FillBoundary(geom) 41 0.02928 0.03136 0.0335 0.99% Gravity::interpolate_monopole_grav() 21 0.02638 0.02679 0.02743 0.81% Castro::construct_new_gravity_source() 10 0.02335 0.02502 0.02732 0.81% Amr::writePlotFile() 2 0.006989 0.02258 0.02629 0.78% Castro::computeTemp() 63 0.01651 0.01746 0.01891 0.56% Castro::initialize_do_advance() 10 0.01196 0.01614 0.01736 0.52% UtilCreateCleanDirectory() 2 5.17e-07 0.001828 0.01462 0.43% Castro::initialize_advance() 10 0.005299 0.01075 0.01396 0.41% FabArray::Saxpy() 20 0.01063 0.01238 0.01344 0.40% FabArray::setDomainBndry() 41 0.007131 0.01015 0.0126 0.37% MultiFab::contains_nan() 20 0.01052 0.01133 0.01234 0.37% VisMF::Write(FabArray) 2 0.008903 0.009611 0.01209 0.36% Castro::construct_old_gravity_source() 10 0.007034 0.009537 0.01018 0.30% Castro::initMFs() 1 0.00665 0.007173 0.008275 0.25% Castro::construct_new_source() 50 0.00561 0.005885 0.00621 0.18% main() 1 0.004036 0.004192 0.004318 0.13% Gravity::get_new_grav_vector() 11 0.003037 0.003441 0.003733 0.11% Gravity::get_old_grav_vector() 10 0.001737 0.002109 0.002635 0.08% Amr::coarseTimeStep() 10 0.0005941 0.001768 0.002062 0.06% Castro::finalize_do_advance() 10 0.0005871 0.00124 0.001493 0.04% AmrLevel::FillPatch() 41 0.0008568 0.001081 0.00116 0.03% Amr::timeStep() 10 0.0001297 0.0001843 0.0004279 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002692 0.0002886 0.0003091 0.01% Castro::do_advance_ctu() 10 0.0001604 0.0001706 0.0001863 0.01% Castro::clean_state() 62 0.0001451 0.0001607 0.0001737 0.01% StateDataPhysBCFunct::() 41 0.0001087 0.0001215 0.0001331 0.00% FillPatchIterator::FillFromLevel0() 41 9.775e-05 0.0001058 0.0001224 0.00% Castro::do_old_sources() 10 7.386e-05 9.165e-05 0.0001006 0.00% FabArray::ParallelCopy() 41 8.261e-05 9.232e-05 9.64e-05 0.00% Amr::FinalizeInit() 1 3.387e-06 1.491e-05 9.188e-05 0.00% Castro::construct_old_source() 50 4.817e-05 7.169e-05 8.302e-05 0.00% Castro::Castro() 1 4.397e-05 6.149e-05 7.298e-05 0.00% FillPatchSingleLevel 41 5.87e-05 6.616e-05 7.061e-05 0.00% Castro::do_new_sources() 10 5.135e-05 5.985e-05 6.904e-05 0.00% Castro::construct_old_gravity() 10 3.454e-05 4.314e-05 5.441e-05 0.00% Castro::subcycle_advance_ctu() 10 4.316e-05 5.061e-05 5.434e-05 0.00% Castro::apply_source_to_state() 20 3.805e-05 4.777e-05 5.365e-05 0.00% Castro::advance() 10 4.073e-05 4.584e-05 5.094e-05 0.00% Castro::construct_new_gravity() 10 2.854e-05 3.52e-05 4.442e-05 0.00% Amr::defBaseLevel() 1 3.074e-05 3.366e-05 3.954e-05 0.00% Castro::expand_state() 10 2.351e-05 2.734e-05 3.549e-05 0.00% Castro::check_for_nan() 20 2.559e-05 2.914e-05 3.205e-05 0.00% Amr::init() 1 1.775e-06 5.724e-06 2.843e-05 0.00% Castro::post_init() 1 1.531e-05 1.757e-05 2.489e-05 0.00% Castro::post_timestep() 10 1.505e-05 1.881e-05 2.306e-05 0.00% Amr::InitializeInit() 1 2.891e-06 4.061e-06 9.745e-06 0.00% Castro::computeNewDt() 9 7.858e-06 8.635e-06 9.286e-06 0.00% Castro::computeInitialDt() 2 2.795e-06 3.294e-06 3.955e-06 0.00% Amr::initialInit() 1 1.192e-06 1.784e-06 2.33e-06 0.00% Other 263 0.01593 0.01861 0.02081 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.369 3.369 3.37 100.00% Amr::coarseTimeStep() 10 3.179 3.179 3.179 94.34% Amr::timeStep() 10 3.167 3.168 3.169 94.04% Castro::advance() 10 3.152 3.152 3.153 93.56% Castro::subcycle_advance_ctu() 10 3.076 3.081 3.095 91.85% Castro::do_advance_ctu() 10 3.076 3.081 3.095 91.85% Castro::construct_ctu_hydro_source() 10 2.351 2.355 2.358 69.98% Gravity::make_radial_gravity() 21 0.305 0.3136 0.3214 9.54% AmrLevel::FillPatch() 41 0.1805 0.195 0.2165 6.43% Gravity::get_new_grav_vector() 11 0.2072 0.2095 0.2112 6.27% FillPatchIterator::Initialize 41 0.1494 0.1634 0.1905 5.65% Castro::construct_old_gravity() 10 0.179 0.1843 0.1896 5.63% Gravity::get_old_grav_vector() 10 0.1783 0.1837 0.189 5.61% Castro::construct_new_gravity() 10 0.1856 0.1872 0.1882 5.59% check_for_negative_density() 10 0.03343 0.1064 0.1839 5.46% Castro::initialize_do_advance() 10 0.1578 0.1622 0.1714 5.09% Amr::init() 1 0.163 0.1635 0.1641 4.87% FillPatchIterator::FillFromLevel0() 41 0.112 0.1208 0.1553 4.61% FillPatchSingleLevel 41 0.1119 0.1207 0.1552 4.61% Amr::initialInit() 1 0.1487 0.1489 0.1497 4.44% Castro::expand_state() 10 0.1037 0.1101 0.1237 3.67% FabArray::ParallelCopy() 41 0.0782 0.08916 0.1235 3.67% Amr::InitializeInit() 1 0.05767 0.09174 0.1226 3.64% Amr::defBaseLevel() 1 0.05767 0.09174 0.1226 3.64% Castro::clean_state() 62 0.1082 0.1121 0.1193 3.54% Castro::initData() 1 0.04134 0.0742 0.1046 3.10% Castro::estTimeStep() 21 0.02379 0.06027 0.09655 2.87% Castro::do_old_sources() 10 0.08916 0.09255 0.09604 2.85% Amr::FinalizeInit() 1 0.02611 0.05718 0.09122 2.71% amrex::Copy() 193 0.06493 0.07777 0.08725 2.59% FabArray::ParallelCopy_finish() 41 0.03586 0.04798 0.08634 2.56% Castro::initialize_advance() 10 0.05312 0.06751 0.07255 2.15% FabArray::setVal() 143 0.05553 0.06564 0.07143 2.12% Castro::do_new_sources() 10 0.05919 0.06375 0.0707 2.10% Castro::computeTemp() 63 0.05629 0.06128 0.06797 2.02% Castro::computeInitialDt() 2 0.00213 0.03313 0.06707 1.99% Castro::reset_internal_energy(MultiFab) 63 0.03978 0.04382 0.04906 1.46% Castro::reset_internal_energy(Fab) 1008 0.0395 0.04353 0.04875 1.45% Castro::normalize_species() 62 0.04455 0.04546 0.0468 1.39% FabArray::ParallelCopy_nowait() 41 0.03708 0.04108 0.04259 1.26% Amr::writePlotFile() 2 0.0365 0.03667 0.03707 1.10% StateDataPhysBCFunct::() 41 0.02941 0.03148 0.03362 1.00% Castro::construct_new_source() 50 0.02903 0.03091 0.03353 0.99% StateData::FillBoundary(geom) 41 0.02928 0.03136 0.0335 0.99% Gravity::interpolate_monopole_grav() 21 0.02638 0.02679 0.02743 0.81% Castro::construct_new_gravity_source() 10 0.02335 0.02502 0.02732 0.81% Castro::finalize_do_advance() 10 0.01304 0.02006 0.02543 0.75% Castro::post_init() 1 0.0232 0.02357 0.02373 0.70% Castro::post_timestep() 10 0.01489 0.01534 0.01624 0.48% UtilCreateCleanDirectory() 2 5.17e-07 0.001828 0.01462 0.43% Castro::apply_source_to_state() 20 0.01066 0.01243 0.01349 0.40% FabArray::Saxpy() 20 0.01063 0.01238 0.01344 0.40% FabArray::setDomainBndry() 41 0.007131 0.01015 0.0126 0.37% Castro::check_for_nan() 20 0.01055 0.01136 0.01237 0.37% MultiFab::contains_nan() 20 0.01052 0.01133 0.01234 0.37% Castro::Castro() 1 0.01024 0.01107 0.01215 0.36% VisMF::Write(FabArray) 2 0.008903 0.009611 0.01209 0.36% Castro::construct_old_source() 50 0.007082 0.009609 0.01026 0.30% Castro::construct_old_gravity_source() 10 0.007034 0.009537 0.01018 0.30% Castro::computeNewDt() 9 0.008303 0.008332 0.008363 0.25% Castro::initMFs() 1 0.00665 0.007173 0.008275 0.25% Other 263 0.02608 0.0299 0.03343 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 34 B 37 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8670 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6784 KiB 6790 KiB 6792 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7134 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4563 KiB 4569 KiB 4590 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 203 KiB 219 KiB 245 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2803 KiB 2806 KiB 2807 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 237 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 40 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.10-36-gfa7a06df7fb5) finalized