Initializing AMReX (25.10-38-g3c1f1c78f605)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.10-38-g3c1f1c78f605) initialized Starting run at 05:20:28 UTC on 2025-10-31. Successfully read inputs file ... Castro git describe: 25.10-7-ged95a91be AMReX git describe: 25.10-38-g3c1f1c78f Microphysics git describe: 25.10-12-g98f72267 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015912217 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.339045281 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.3410664 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.314977146 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.313727182 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.3539443 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.303779892 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.295577768 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.296618352 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.295522758 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.29771602 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007526414 seconds Ending run at 05:20:31 UTC on 2025-10-31. Run time = 3.334841976 Run time without initialization = 3.164301467 Average number of zones advanced per microsecond: 0.828 Average number of zones advanced per microsecond per rank: 0.104 TinyProfiler total time across processes [min...avg...max]: 3.3334 ... 3.3342 ... 3.3349 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1856 2.2406 2.2828 68.45% Gravity::make_radial_gravity() 21 0.2915 0.2968 0.3122 9.36% check_for_negative_density() 10 0.02319 0.06847 0.126 3.78% Castro::initData() 1 0.04497 0.07431 0.1024 3.07% FabArray::ParallelCopy_finish() 41 0.03625 0.04972 0.08976 2.69% amrex::Copy() 193 0.06346 0.07833 0.08706 2.61% Castro::estTimeStep() 21 0.02205 0.05523 0.08615 2.58% FabArray::setVal() 143 0.05224 0.06499 0.0704 2.11% Castro::reset_internal_energy(Fab) 1008 0.04526 0.04617 0.04729 1.42% Castro::normalize_species() 62 0.0453 0.04601 0.04724 1.42% FabArray::ParallelCopy_nowait() 41 0.03592 0.0411 0.04313 1.29% FillPatchIterator::Initialize 41 0.02768 0.03241 0.03483 1.04% StateData::FillBoundary(geom) 41 0.02896 0.03129 0.03294 0.99% Gravity::interpolate_monopole_grav() 21 0.0263 0.0269 0.0288 0.86% Castro::construct_new_gravity_source() 10 0.02328 0.02496 0.02683 0.80% Castro::computeTemp() 63 0.01793 0.01828 0.01861 0.56% Castro::initialize_do_advance() 10 0.01153 0.01628 0.01763 0.53% Castro::initialize_advance() 10 0.005339 0.0107 0.01368 0.41% VisMF::Write(FabArray) 2 0.009043 0.009866 0.01353 0.41% FabArray::Saxpy() 20 0.01086 0.0126 0.01348 0.40% FabArray::setDomainBndry() 41 0.007238 0.01004 0.01187 0.36% MultiFab::contains_nan() 20 0.01022 0.01091 0.01187 0.36% Amr::writePlotFile() 2 0.008024 0.01048 0.01136 0.34% Castro::construct_old_gravity_source() 10 0.007012 0.009514 0.009998 0.30% Castro::initMFs() 1 0.006555 0.007189 0.007849 0.24% Castro::enforce_min_density() 62 0.005624 0.005995 0.006543 0.20% Castro::construct_new_source() 50 0.005576 0.006 0.006316 0.19% main() 1 0.003657 0.004143 0.004298 0.13% Gravity::get_new_grav_vector() 11 0.003385 0.003734 0.004044 0.12% Amr::coarseTimeStep() 10 0.001063 0.002003 0.002629 0.08% Gravity::get_old_grav_vector() 10 0.001592 0.002015 0.002408 0.07% Castro::finalize_do_advance() 10 0.0005325 0.001039 0.001239 0.04% AmrLevel::FillPatch() 41 0.0008064 0.0009958 0.001127 0.03% Amr::timeStep() 10 0.0001361 0.0001803 0.0003971 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002697 0.0002858 0.0003221 0.01% Castro::do_advance_ctu() 10 0.0001573 0.0001874 0.0002189 0.01% Castro::clean_state() 62 0.0001408 0.0001583 0.0001931 0.01% StateDataPhysBCFunct::() 41 0.0001139 0.0001351 0.000158 0.00% FillPatchIterator::FillFromLevel0() 41 9.65e-05 0.0001064 0.000114 0.00% Castro::do_old_sources() 10 7.491e-05 8.997e-05 0.0001067 0.00% FabArray::ParallelCopy() 41 8.92e-05 9.482e-05 0.0001056 0.00% Amr::FinalizeInit() 1 3.01e-06 1.393e-05 8.384e-05 0.00% Castro::Castro() 1 4.841e-05 6.516e-05 8.318e-05 0.00% Castro::construct_old_source() 50 5.199e-05 6.777e-05 8.108e-05 0.00% FillPatchSingleLevel 41 6.647e-05 7.144e-05 8.015e-05 0.00% Castro::do_new_sources() 10 5.178e-05 5.848e-05 6.937e-05 0.00% Castro::apply_source_to_state() 20 4.142e-05 5.018e-05 6.007e-05 0.00% Castro::subcycle_advance_ctu() 10 4.766e-05 5.174e-05 5.594e-05 0.00% Castro::construct_old_gravity() 10 2.972e-05 3.638e-05 5.09e-05 0.00% Castro::construct_new_gravity() 10 2.941e-05 3.505e-05 4.717e-05 0.00% Castro::advance() 10 3.781e-05 4.328e-05 4.599e-05 0.00% Amr::defBaseLevel() 1 3.12e-05 3.487e-05 4.095e-05 0.00% Castro::post_init() 1 1.508e-05 1.906e-05 3.394e-05 0.00% Castro::check_for_nan() 20 2.465e-05 2.78e-05 3.037e-05 0.00% Castro::expand_state() 10 2.149e-05 2.439e-05 2.74e-05 0.00% Castro::post_timestep() 10 1.412e-05 1.681e-05 1.905e-05 0.00% Castro::computeInitialDt() 2 2.856e-06 4.42e-06 1.181e-05 0.00% Castro::computeNewDt() 9 7.731e-06 8.878e-06 9.579e-06 0.00% Amr::InitializeInit() 1 2.93e-06 4.127e-06 8.443e-06 0.00% Amr::init() 1 1.999e-06 2.333e-06 2.853e-06 0.00% Amr::initialInit() 1 1.655e-06 1.982e-06 2.121e-06 0.00% Other 203 0.009506 0.01317 0.01561 0.47% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.333 3.334 3.335 100.00% Amr::coarseTimeStep() 10 3.153 3.153 3.153 94.53% Amr::timeStep() 10 3.14 3.141 3.142 94.21% Castro::advance() 10 3.124 3.125 3.125 93.71% Castro::subcycle_advance_ctu() 10 3.049 3.053 3.07 92.06% Castro::do_advance_ctu() 10 3.049 3.053 3.07 92.06% Castro::construct_ctu_hydro_source() 10 2.327 2.33 2.333 69.95% Gravity::make_radial_gravity() 21 0.3077 0.313 0.3252 9.75% AmrLevel::FillPatch() 41 0.1773 0.1973 0.2148 6.44% Gravity::get_new_grav_vector() 11 0.2072 0.2089 0.2103 6.31% Castro::construct_old_gravity() 10 0.1803 0.1859 0.198 5.94% Gravity::get_old_grav_vector() 10 0.1798 0.1853 0.1974 5.92% FillPatchIterator::Initialize 41 0.1475 0.1651 0.1901 5.70% Castro::construct_new_gravity() 10 0.1826 0.1834 0.1843 5.53% Amr::init() 1 0.1688 0.1696 0.1703 5.11% Castro::initialize_do_advance() 10 0.1564 0.1644 0.1691 5.07% FillPatchIterator::FillFromLevel0() 41 0.1093 0.1226 0.1552 4.65% FillPatchSingleLevel 41 0.1091 0.1225 0.1551 4.65% Amr::initialInit() 1 0.1528 0.1543 0.155 4.65% check_for_negative_density() 10 0.02319 0.06847 0.126 3.78% FabArray::ParallelCopy() 41 0.07844 0.09103 0.1259 3.78% Amr::InitializeInit() 1 0.06768 0.09624 0.1243 3.73% Amr::defBaseLevel() 1 0.06767 0.09623 0.1243 3.73% Castro::expand_state() 10 0.1012 0.1115 0.1227 3.68% Castro::clean_state() 62 0.1147 0.116 0.1186 3.56% Castro::initData() 1 0.04911 0.07833 0.1066 3.20% Castro::do_old_sources() 10 0.08852 0.09262 0.09541 2.86% FabArray::ParallelCopy_finish() 41 0.03625 0.04972 0.08976 2.69% amrex::Copy() 193 0.06346 0.07833 0.08706 2.61% Amr::FinalizeInit() 1 0.02984 0.05802 0.08667 2.60% Castro::estTimeStep() 21 0.02205 0.05523 0.08615 2.58% Castro::initialize_advance() 10 0.05083 0.06806 0.07261 2.18% FabArray::setVal() 143 0.05224 0.06499 0.0704 2.11% Castro::do_new_sources() 10 0.05983 0.06402 0.06941 2.08% Castro::computeTemp() 63 0.06376 0.06473 0.0661 1.98% Castro::computeInitialDt() 2 0.002281 0.03068 0.0589 1.77% Castro::reset_internal_energy(MultiFab) 63 0.04558 0.04645 0.04758 1.43% Castro::reset_internal_energy(Fab) 1008 0.04526 0.04617 0.04729 1.42% Castro::normalize_species() 62 0.0453 0.04601 0.04724 1.42% FabArray::ParallelCopy_nowait() 41 0.03607 0.04121 0.04321 1.30% Castro::construct_new_source() 50 0.02928 0.03096 0.03314 0.99% StateDataPhysBCFunct::() 41 0.02907 0.03142 0.03306 0.99% StateData::FillBoundary(geom) 41 0.02896 0.03129 0.03294 0.99% Gravity::interpolate_monopole_grav() 21 0.0263 0.0269 0.0288 0.86% Castro::post_init() 1 0.02492 0.02674 0.02723 0.82% Castro::construct_new_gravity_source() 10 0.02328 0.02496 0.02683 0.80% Amr::writePlotFile() 2 0.02246 0.02293 0.02368 0.71% Castro::finalize_do_advance() 10 0.01224 0.01708 0.02084 0.62% Castro::post_timestep() 10 0.01536 0.01582 0.01658 0.50% Castro::apply_source_to_state() 20 0.0109 0.01265 0.01353 0.41% VisMF::Write(FabArray) 2 0.009043 0.009866 0.01353 0.41% FabArray::Saxpy() 20 0.01086 0.0126 0.01348 0.40% Castro::Castro() 1 0.01022 0.01112 0.01197 0.36% Castro::check_for_nan() 20 0.01024 0.01093 0.0119 0.36% FabArray::setDomainBndry() 41 0.007238 0.01004 0.01187 0.36% MultiFab::contains_nan() 20 0.01022 0.01091 0.01187 0.36% Castro::construct_old_source() 50 0.007064 0.009582 0.01007 0.30% Castro::construct_old_gravity_source() 10 0.007012 0.009514 0.009998 0.30% Castro::computeNewDt() 9 0.008515 0.008526 0.008543 0.26% Castro::initMFs() 1 0.006555 0.007189 0.007849 0.24% Castro::enforce_min_density() 62 0.005624 0.005995 0.006543 0.20% Other 203 0.01968 0.02499 0.02959 0.89% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 47 B 80 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8658 KiB 8668 KiB 8670 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6769 KiB 6772 KiB 6774 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4569 KiB 4575 KiB 4596 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 201 KiB 223 KiB 245 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2807 KiB 2811 KiB 2812 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 235 KiB 239 KiB 248 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 42 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 79 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.10-38-g3c1f1c78f605) finalized