Initializing AMReX (25.11-7-g0c4bc54f3c0c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.11-7-g0c4bc54f3c0c) initialized Starting run at 06:34:23 UTC on 2025-11-05. Successfully read inputs file ... Castro git describe: 25.11-1-g335f3dd63 AMReX git describe: 25.11-7-g0c4bc54f3 Microphysics git describe: 25.11-2-gba4f9233 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01407649 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.3467712 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.348085183 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.322152339 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.326238482 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.362102855 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.311358475 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.30281312 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.301788703 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.303240206 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.303205654 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008161383 seconds Ending run at 06:34:27 UTC on 2025-11-05. Run time = 3.420243755 Run time without initialization = 3.241101663 Average number of zones advanced per microsecond: 0.809 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4191 ... 3.4199 ... 3.4207 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2148 2.2690 2.3445 68.54% Gravity::make_radial_gravity() 21 0.282 0.2912 0.3043 8.89% check_for_negative_density() 10 0.03037 0.1089 0.1651 4.83% Castro::initData() 1 0.03416 0.07019 0.1166 3.41% Castro::estTimeStep() 21 0.03183 0.07499 0.1112 3.25% FabArray::ParallelCopy_finish() 41 0.0381 0.05913 0.09459 2.77% amrex::Copy() 193 0.06437 0.08103 0.09421 2.75% FabArray::setVal() 143 0.05171 0.0667 0.07472 2.18% Castro::reset_internal_energy(Fab) 1008 0.04472 0.04679 0.04828 1.41% Castro::normalize_species() 62 0.04467 0.04539 0.04638 1.36% FabArray::ParallelCopy_nowait() 41 0.03956 0.04061 0.04317 1.26% FillPatchIterator::Initialize 41 0.02745 0.0324 0.03555 1.04% StateData::FillBoundary(geom) 41 0.02906 0.03045 0.03354 0.98% Gravity::interpolate_monopole_grav() 21 0.02582 0.02715 0.03173 0.93% Castro::construct_new_gravity_source() 10 0.0222 0.02328 0.02477 0.72% Castro::computeTemp() 63 0.01776 0.01809 0.01854 0.54% Castro::initialize_do_advance() 10 0.01158 0.01597 0.01723 0.50% Castro::initialize_advance() 10 0.005282 0.01071 0.01379 0.40% FabArray::setDomainBndry() 41 0.007753 0.01092 0.01331 0.39% FabArray::Saxpy() 20 0.01055 0.01193 0.01298 0.38% Amr::writePlotFile() 2 0.007692 0.01055 0.0127 0.37% MultiFab::contains_nan() 20 0.009373 0.01044 0.01184 0.35% VisMF::Write(FabArray) 2 0.008578 0.009416 0.01182 0.35% Castro::construct_old_gravity_source() 10 0.006561 0.008709 0.00925 0.27% Castro::initMFs() 1 0.006527 0.006856 0.00834 0.24% Castro::construct_new_source() 50 0.005618 0.006058 0.006335 0.19% main() 1 0.004064 0.004403 0.004729 0.14% Gravity::get_new_grav_vector() 11 0.002916 0.003419 0.003701 0.11% Gravity::get_old_grav_vector() 10 0.001633 0.002051 0.002548 0.07% Amr::coarseTimeStep() 10 0.0009671 0.001235 0.001534 0.04% Castro::finalize_do_advance() 10 0.0006037 0.001014 0.001271 0.04% AmrLevel::FillPatch() 41 0.0007533 0.0009854 0.00114 0.03% Amr::timeStep() 10 0.0001283 0.0001863 0.0004377 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002567 0.0002693 0.0002848 0.01% Castro::do_advance_ctu() 10 0.0001586 0.000179 0.0002464 0.01% Castro::clean_state() 62 0.000142 0.0001554 0.0001688 0.00% StateDataPhysBCFunct::() 41 9.135e-05 0.0001102 0.0001309 0.00% FillPatchIterator::FillFromLevel0() 41 9.963e-05 0.000111 0.0001227 0.00% Castro::Castro() 1 5.462e-05 8.941e-05 0.0001082 0.00% FabArray::ParallelCopy() 41 8.088e-05 9.022e-05 0.0001042 0.00% Castro::do_old_sources() 10 7.147e-05 8.183e-05 9.232e-05 0.00% Castro::construct_old_source() 50 5.138e-05 6.621e-05 7.994e-05 0.00% Amr::FinalizeInit() 1 3.351e-06 1.403e-05 7.832e-05 0.00% Castro::do_new_sources() 10 4.861e-05 5.739e-05 7.024e-05 0.00% FillPatchSingleLevel 41 5.728e-05 6.219e-05 6.662e-05 0.00% Castro::apply_source_to_state() 20 3.927e-05 4.86e-05 5.964e-05 0.00% Castro::subcycle_advance_ctu() 10 4.322e-05 4.896e-05 5.482e-05 0.00% Castro::advance() 10 3.783e-05 4.388e-05 5.227e-05 0.00% Castro::construct_old_gravity() 10 3.148e-05 4.064e-05 5.183e-05 0.00% Castro::construct_new_gravity() 10 2.895e-05 3.57e-05 4.617e-05 0.00% Amr::defBaseLevel() 1 3.633e-05 3.925e-05 4.617e-05 0.00% Castro::check_for_nan() 20 2.269e-05 2.422e-05 2.737e-05 0.00% Castro::expand_state() 10 1.902e-05 2.386e-05 2.71e-05 0.00% Castro::post_timestep() 10 1.374e-05 1.876e-05 2.285e-05 0.00% Castro::post_init() 1 1.452e-05 1.585e-05 1.882e-05 0.00% Castro::computeNewDt() 9 8.719e-06 9.143e-06 9.803e-06 0.00% Amr::InitializeInit() 1 2.306e-06 3.51e-06 8.712e-06 0.00% Castro::computeInitialDt() 2 5.055e-06 6.12e-06 6.813e-06 0.00% Amr::init() 1 2.287e-06 4.429e-06 6.32e-06 0.00% Amr::initialInit() 1 1.421e-06 2.773e-06 6.097e-06 0.00% Other 265 0.0156 0.01811 0.02057 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.419 3.42 3.421 100.00% Amr::coarseTimeStep() 10 3.228 3.228 3.228 94.37% Amr::timeStep() 10 3.216 3.217 3.217 94.04% Castro::advance() 10 3.2 3.2 3.201 93.57% Castro::subcycle_advance_ctu() 10 3.124 3.129 3.143 91.89% Castro::do_advance_ctu() 10 3.124 3.129 3.143 91.89% Castro::construct_ctu_hydro_source() 10 2.396 2.398 2.401 70.18% Gravity::make_radial_gravity() 21 0.2978 0.3072 0.3173 9.28% AmrLevel::FillPatch() 41 0.1875 0.2057 0.2286 6.68% FillPatchIterator::Initialize 41 0.1562 0.174 0.2025 5.92% Castro::construct_old_gravity() 10 0.1866 0.1933 0.2021 5.91% Gravity::get_new_grav_vector() 11 0.1999 0.2006 0.2019 5.90% Gravity::get_old_grav_vector() 10 0.1859 0.1926 0.2015 5.89% Castro::construct_new_gravity() 10 0.1784 0.1789 0.1797 5.25% Amr::init() 1 0.1781 0.1787 0.1792 5.24% FillPatchIterator::FillFromLevel0() 41 0.1131 0.1307 0.1673 4.89% FillPatchSingleLevel 41 0.113 0.1306 0.1672 4.89% Castro::initialize_do_advance() 10 0.1569 0.161 0.1665 4.87% check_for_negative_density() 10 0.03037 0.1089 0.1651 4.83% Amr::initialInit() 1 0.1634 0.1644 0.1649 4.82% Amr::InitializeInit() 1 0.05499 0.09139 0.1382 4.04% Amr::defBaseLevel() 1 0.05499 0.09138 0.1382 4.04% FabArray::ParallelCopy() 41 0.07929 0.09993 0.1379 4.03% Castro::initData() 1 0.03806 0.07404 0.1201 3.51% Castro::expand_state() 10 0.1029 0.1083 0.1191 3.48% Castro::clean_state() 62 0.114 0.1158 0.1183 3.46% Castro::estTimeStep() 21 0.03183 0.07499 0.1112 3.25% Amr::FinalizeInit() 1 0.02515 0.07298 0.1097 3.21% Castro::do_old_sources() 10 0.09386 0.09955 0.1042 3.05% FabArray::ParallelCopy_finish() 41 0.0381 0.05913 0.09459 2.77% amrex::Copy() 193 0.06437 0.08103 0.09421 2.75% Castro::computeInitialDt() 2 0.002245 0.0496 0.08627 2.52% FabArray::setVal() 143 0.05171 0.0667 0.07472 2.18% Castro::initialize_advance() 10 0.05346 0.06792 0.07302 2.13% Castro::computeTemp() 63 0.06278 0.06515 0.06708 1.96% Castro::do_new_sources() 10 0.0578 0.06201 0.06617 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04499 0.04706 0.04854 1.42% Castro::reset_internal_energy(Fab) 1008 0.04472 0.04679 0.04828 1.41% Castro::normalize_species() 62 0.04467 0.04539 0.04638 1.36% FabArray::ParallelCopy_nowait() 41 0.03967 0.04071 0.04326 1.26% StateDataPhysBCFunct::() 41 0.02915 0.03056 0.03365 0.98% StateData::FillBoundary(geom) 41 0.02906 0.03045 0.03354 0.98% Gravity::interpolate_monopole_grav() 21 0.02582 0.02715 0.03173 0.93% Castro::construct_new_source() 50 0.02812 0.02934 0.03109 0.91% Castro::construct_new_gravity_source() 10 0.0222 0.02328 0.02477 0.72% Castro::post_init() 1 0.02265 0.02299 0.02308 0.67% Amr::writePlotFile() 2 0.02248 0.02261 0.02307 0.67% Castro::finalize_do_advance() 10 0.01244 0.01719 0.02097 0.61% Castro::post_timestep() 10 0.01569 0.01599 0.01641 0.48% FabArray::setDomainBndry() 41 0.007753 0.01092 0.01331 0.39% Castro::apply_source_to_state() 20 0.01059 0.01198 0.01304 0.38% FabArray::Saxpy() 20 0.01055 0.01193 0.01298 0.38% Castro::Castro() 1 0.01063 0.01117 0.01194 0.35% Castro::check_for_nan() 20 0.009396 0.01046 0.01187 0.35% MultiFab::contains_nan() 20 0.009373 0.01044 0.01184 0.35% VisMF::Write(FabArray) 2 0.008578 0.009416 0.01182 0.35% Castro::construct_old_source() 50 0.006613 0.008775 0.009321 0.27% Castro::computeNewDt() 9 0.009214 0.009233 0.009254 0.27% Castro::construct_old_gravity_source() 10 0.006561 0.008709 0.00925 0.27% Castro::initMFs() 1 0.006527 0.006856 0.00834 0.24% Other 265 0.02551 0.02906 0.03285 0.96% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 32 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8661 KiB 8671 KiB 8674 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6755 KiB 6762 KiB 6767 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7141 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4564 KiB 4571 KiB 4594 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 204 KiB 221 KiB 247 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2803 KiB 2807 KiB 2808 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 221 KiB 229 KiB 236 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 34 KiB 42 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 75 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 72 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.11-7-g0c4bc54f3c0c) finalized