Initializing AMReX (25.11-8-gf54bcfa66650)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.11-8-gf54bcfa66650) initialized Starting run at 06:31:04 UTC on 2025-11-06. Successfully read inputs file ... Castro git describe: 25.11-4-gc33bdf510 AMReX git describe: 25.11-8-gf54bcfa66 Microphysics git describe: 25.11-2-gba4f9233 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014439558 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.341190644 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.340469529 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.319392543 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.320166728 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.36170952 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306319801 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297884516 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.298477829 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.300580197 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298924167 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007761422 seconds Ending run at 06:31:07 UTC on 2025-11-06. Run time = 3.376241353 Run time without initialization = 3.198552051 Average number of zones advanced per microsecond: 0.820 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3755 ... 3.3761 ... 3.3764 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2279 2.2731 2.3168 68.62% Gravity::make_radial_gravity() 21 0.2806 0.2896 0.309 9.15% check_for_negative_density() 10 0.02462 0.0666 0.122 3.61% Castro::initData() 1 0.03408 0.07222 0.1153 3.42% Castro::estTimeStep() 21 0.03225 0.07303 0.1077 3.19% amrex::Copy() 193 0.06316 0.08154 0.09368 2.77% FabArray::ParallelCopy_finish() 41 0.03831 0.05246 0.08648 2.56% FabArray::setVal() 143 0.05413 0.06543 0.0721 2.14% Castro::reset_internal_energy(Fab) 1008 0.04571 0.04673 0.04885 1.45% Castro::normalize_species() 62 0.04409 0.04456 0.04576 1.36% FabArray::ParallelCopy_nowait() 41 0.03543 0.04128 0.04285 1.27% FillPatchIterator::Initialize 41 0.02748 0.03325 0.03537 1.05% StateData::FillBoundary(geom) 41 0.02829 0.03123 0.03398 1.01% Castro::construct_new_gravity_source() 10 0.0227 0.02454 0.02634 0.78% Gravity::interpolate_monopole_grav() 21 0.02524 0.02571 0.02609 0.77% Castro::computeTemp() 63 0.01777 0.01801 0.01851 0.55% Castro::initialize_do_advance() 10 0.01144 0.01654 0.01763 0.52% FabArray::Saxpy() 20 0.01096 0.01263 0.01391 0.41% Castro::initialize_advance() 10 0.005425 0.0105 0.01321 0.39% VisMF::Write(FabArray) 2 0.009194 0.009739 0.01285 0.38% FabArray::setDomainBndry() 41 0.007161 0.01054 0.01262 0.37% MultiFab::contains_nan() 20 0.009618 0.01022 0.01126 0.33% Amr::writePlotFile() 2 0.007451 0.009751 0.01029 0.30% Castro::construct_old_gravity_source() 10 0.00709 0.009488 0.01013 0.30% Castro::initMFs() 1 0.006382 0.007191 0.007982 0.24% Castro::construct_new_source() 50 0.00555 0.006064 0.006264 0.19% main() 1 0.003574 0.004407 0.004865 0.14% Gravity::get_new_grav_vector() 11 0.002693 0.003538 0.003826 0.11% Gravity::get_old_grav_vector() 10 0.001464 0.002065 0.002708 0.08% Amr::coarseTimeStep() 10 0.000954 0.001562 0.001871 0.06% Castro::finalize_do_advance() 10 0.0009268 0.00117 0.001244 0.04% AmrLevel::FillPatch() 41 0.0007496 0.0009632 0.001083 0.03% Amr::timeStep() 10 0.0001328 0.0001736 0.0003572 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000257 0.0002704 0.0002923 0.01% Castro::do_advance_ctu() 10 0.0001428 0.0001722 0.00019 0.01% Castro::clean_state() 62 0.0001407 0.000154 0.0001661 0.00% StateDataPhysBCFunct::() 41 9.494e-05 0.0001227 0.0001568 0.00% FillPatchIterator::FillFromLevel0() 41 9.022e-05 0.0001026 0.0001185 0.00% FabArray::ParallelCopy() 41 8.31e-05 9.483e-05 0.0001029 0.00% Castro::do_old_sources() 10 7.098e-05 8.455e-05 9.75e-05 0.00% Castro::Castro() 1 5.509e-05 6.601e-05 8.006e-05 0.00% Castro::construct_old_source() 50 4.797e-05 6.702e-05 7.828e-05 0.00% Amr::FinalizeInit() 1 3.483e-06 1.277e-05 7.313e-05 0.00% FillPatchSingleLevel 41 5.979e-05 6.515e-05 7.107e-05 0.00% Castro::apply_source_to_state() 20 4.135e-05 5.203e-05 6.273e-05 0.00% Castro::do_new_sources() 10 4.861e-05 5.764e-05 6.182e-05 0.00% Castro::advance() 10 3.154e-05 4.32e-05 5.469e-05 0.00% Castro::subcycle_advance_ctu() 10 4.255e-05 4.682e-05 5.334e-05 0.00% Castro::construct_old_gravity() 10 2.999e-05 3.665e-05 5.084e-05 0.00% Amr::defBaseLevel() 1 3.844e-05 4.151e-05 4.788e-05 0.00% Castro::construct_new_gravity() 10 2.674e-05 3.487e-05 4.156e-05 0.00% Castro::expand_state() 10 2.149e-05 2.382e-05 2.612e-05 0.00% Castro::check_for_nan() 20 2.105e-05 2.31e-05 2.498e-05 0.00% Castro::post_timestep() 10 1.395e-05 1.732e-05 2.363e-05 0.00% Castro::post_init() 1 1.49e-05 1.75e-05 2.087e-05 0.00% Amr::InitializeInit() 1 2.57e-06 4.804e-06 1.673e-05 0.00% Castro::computeInitialDt() 2 5.317e-06 7.22e-06 1.401e-05 0.00% Castro::computeNewDt() 9 8.118e-06 8.939e-06 1.003e-05 0.00% Amr::initialInit() 1 1.765e-06 3.93e-06 5.748e-06 0.00% Amr::init() 1 2.197e-06 3.201e-06 5.724e-06 0.00% Other 265 0.01479 0.01857 0.02091 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.375 3.376 3.376 100.00% Amr::coarseTimeStep() 10 3.186 3.186 3.186 94.36% Amr::timeStep() 10 3.174 3.174 3.174 94.02% Castro::advance() 10 3.158 3.158 3.158 93.54% Castro::subcycle_advance_ctu() 10 3.082 3.087 3.101 91.84% Castro::do_advance_ctu() 10 3.082 3.087 3.101 91.84% Castro::construct_ctu_hydro_source() 10 2.345 2.36 2.37 70.20% Gravity::make_radial_gravity() 21 0.2974 0.3069 0.3224 9.55% AmrLevel::FillPatch() 41 0.1937 0.2031 0.2151 6.37% Gravity::get_new_grav_vector() 11 0.2019 0.2037 0.2047 6.06% Castro::construct_old_gravity() 10 0.1783 0.1835 0.196 5.80% Gravity::get_old_grav_vector() 10 0.1774 0.1829 0.1954 5.79% FillPatchIterator::Initialize 41 0.1609 0.1692 0.1853 5.49% Castro::construct_new_gravity() 10 0.181 0.1818 0.1825 5.40% Amr::init() 1 0.1771 0.1776 0.1782 5.28% Castro::initialize_do_advance() 10 0.154 0.1637 0.1676 4.96% Amr::initialInit() 1 0.1625 0.1633 0.164 4.86% FillPatchIterator::FillFromLevel0() 41 0.1134 0.1255 0.1506 4.46% FillPatchSingleLevel 41 0.1133 0.1254 0.1505 4.46% Amr::InitializeInit() 1 0.05413 0.09323 0.1371 4.06% Amr::defBaseLevel() 1 0.05413 0.09323 0.1371 4.06% FabArray::ParallelCopy() 41 0.08079 0.09393 0.1221 3.62% check_for_negative_density() 10 0.02462 0.0666 0.122 3.61% Castro::initData() 1 0.03794 0.076 0.1188 3.52% Castro::expand_state() 10 0.1011 0.1109 0.1179 3.49% Castro::clean_state() 62 0.1134 0.1148 0.1169 3.46% Castro::do_old_sources() 10 0.09254 0.0994 0.1112 3.29% Amr::FinalizeInit() 1 0.02607 0.07007 0.1098 3.25% Castro::estTimeStep() 21 0.03225 0.07303 0.1077 3.19% amrex::Copy() 193 0.06316 0.08154 0.09368 2.77% FabArray::ParallelCopy_finish() 41 0.03831 0.05246 0.08648 2.56% Castro::computeInitialDt() 2 0.00226 0.0463 0.08608 2.55% FabArray::setVal() 143 0.05413 0.06543 0.0721 2.14% Castro::initialize_advance() 10 0.05345 0.06789 0.07209 2.14% Castro::do_new_sources() 10 0.06088 0.06362 0.06783 2.01% Castro::computeTemp() 63 0.06376 0.06501 0.06745 2.00% Castro::reset_internal_energy(MultiFab) 63 0.04599 0.047 0.04912 1.45% Castro::reset_internal_energy(Fab) 1008 0.04571 0.04673 0.04885 1.45% Castro::normalize_species() 62 0.04409 0.04456 0.04576 1.36% FabArray::ParallelCopy_nowait() 41 0.03552 0.04137 0.04293 1.27% StateDataPhysBCFunct::() 41 0.02838 0.03135 0.03409 1.01% StateData::FillBoundary(geom) 41 0.02829 0.03123 0.03398 1.01% Castro::construct_new_source() 50 0.02871 0.03061 0.03211 0.95% Castro::construct_new_gravity_source() 10 0.0227 0.02454 0.02634 0.78% Gravity::interpolate_monopole_grav() 21 0.02524 0.02571 0.02609 0.77% Castro::post_init() 1 0.02282 0.02331 0.02346 0.69% Amr::writePlotFile() 2 0.022 0.02212 0.02247 0.67% Castro::finalize_do_advance() 10 0.01334 0.01852 0.02186 0.65% Castro::post_timestep() 10 0.01565 0.01591 0.01622 0.48% Castro::apply_source_to_state() 20 0.01101 0.01268 0.01397 0.41% FabArray::Saxpy() 20 0.01096 0.01263 0.01391 0.41% VisMF::Write(FabArray) 2 0.009194 0.009739 0.01285 0.38% FabArray::setDomainBndry() 41 0.007161 0.01054 0.01262 0.37% Castro::Castro() 1 0.009647 0.01081 0.01171 0.35% Castro::check_for_nan() 20 0.009641 0.01025 0.01128 0.33% MultiFab::contains_nan() 20 0.009618 0.01022 0.01126 0.33% Castro::construct_old_source() 50 0.007138 0.009555 0.01021 0.30% Castro::construct_old_gravity_source() 10 0.00709 0.009488 0.01013 0.30% Castro::computeNewDt() 9 0.009384 0.009392 0.0094 0.28% Castro::initMFs() 1 0.006382 0.007191 0.007982 0.24% Other 265 0.02475 0.02979 0.03364 1.00% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 38 B 54 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8669 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6756 KiB 6759 KiB 6761 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4561 KiB 4567 KiB 4583 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 217 KiB 226 KiB 236 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2802 KiB 2805 KiB 2806 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 224 KiB 231 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 42 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 77 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 69 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.11-8-gf54bcfa66650) finalized