Initializing AMReX (25.11-12-g43a3256936fc)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.11-12-g43a3256936fc) initialized Starting run at 06:31:52 UTC on 2025-11-07. Successfully read inputs file ... Castro git describe: 25.11-4-gc33bdf510 AMReX git describe: 25.11-12-g43a325693 Microphysics git describe: 25.11-2-gba4f9233 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01438094 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.354311757 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.34380595 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.318092076 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.316749117 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.375221492 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.307367965 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.299155735 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.298538093 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.300103973 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.299295022 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007462034 seconds Ending run at 06:31:55 UTC on 2025-11-07. Run time = 3.410276527 Run time without initialization = 3.225248003 Average number of zones advanced per microsecond: 0.813 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.4090 ... 3.4098 ... 3.4108 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2303 2.2665 2.2995 67.42% Gravity::make_radial_gravity() 21 0.2853 0.2899 0.3043 8.92% check_for_negative_density() 10 0.06265 0.09623 0.131 3.84% Castro::initData() 1 0.03393 0.07213 0.1192 3.49% Castro::estTimeStep() 21 0.02605 0.07815 0.1185 3.47% FabArray::ParallelCopy_finish() 41 0.04001 0.05893 0.1037 3.04% amrex::Copy() 193 0.06652 0.0819 0.09452 2.77% FabArray::setVal() 143 0.05304 0.0662 0.07372 2.16% Castro::reset_internal_energy(Fab) 1008 0.04571 0.04684 0.048 1.41% Castro::normalize_species() 62 0.04423 0.04487 0.04573 1.34% FabArray::ParallelCopy_nowait() 41 0.03504 0.03983 0.04138 1.21% FillPatchIterator::Initialize 41 0.02728 0.03268 0.03582 1.05% StateData::FillBoundary(geom) 41 0.02841 0.03068 0.03319 0.97% Gravity::interpolate_monopole_grav() 21 0.0254 0.02645 0.02794 0.82% Castro::construct_new_gravity_source() 10 0.02231 0.02364 0.02614 0.77% Castro::computeTemp() 63 0.01786 0.0181 0.01853 0.54% Castro::initialize_do_advance() 10 0.01162 0.01644 0.01811 0.53% FabArray::setDomainBndry() 41 0.007667 0.01117 0.01388 0.41% Castro::initialize_advance() 10 0.005322 0.01074 0.01379 0.40% FabArray::Saxpy() 20 0.01065 0.01198 0.01314 0.39% Amr::writePlotFile() 2 0.007007 0.009929 0.01225 0.36% VisMF::Write(FabArray) 2 0.008501 0.009628 0.01217 0.36% MultiFab::contains_nan() 20 0.009663 0.01035 0.01166 0.34% Castro::construct_old_gravity_source() 10 0.006629 0.008798 0.009389 0.28% Castro::initMFs() 1 0.006586 0.007144 0.007658 0.22% Castro::construct_new_source() 50 0.005629 0.005965 0.006171 0.18% main() 1 0.003916 0.00439 0.004713 0.14% Gravity::get_new_grav_vector() 11 0.002805 0.003533 0.00387 0.11% Amr::coarseTimeStep() 10 0.0008602 0.002187 0.002871 0.08% Gravity::get_old_grav_vector() 10 0.001697 0.001998 0.002302 0.07% Castro::finalize_do_advance() 10 0.0005924 0.001187 0.001618 0.05% AmrLevel::FillPatch() 41 0.0007489 0.001023 0.001169 0.03% Amr::timeStep() 10 0.0001226 0.0001744 0.0003871 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002563 0.0002681 0.0002854 0.01% Castro::do_advance_ctu() 10 0.0001511 0.0001801 0.000219 0.01% Castro::clean_state() 62 0.0001429 0.0001619 0.0001844 0.01% StateDataPhysBCFunct::() 41 0.0001022 0.0001174 0.0001373 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001007 0.0001096 0.0001306 0.00% FabArray::ParallelCopy() 41 8.086e-05 9.199e-05 0.000103 0.00% Castro::do_old_sources() 10 6.775e-05 8.427e-05 0.0001018 0.00% Amr::FinalizeInit() 1 3.539e-06 1.51e-05 9.018e-05 0.00% Castro::Castro() 1 6.177e-05 7.216e-05 8.694e-05 0.00% FillPatchSingleLevel 41 6.258e-05 6.883e-05 8.211e-05 0.00% Castro::construct_old_source() 50 4.878e-05 6.407e-05 7.192e-05 0.00% Castro::do_new_sources() 10 4.831e-05 6.107e-05 6.802e-05 0.00% Castro::advance() 10 3.569e-05 4.672e-05 6.33e-05 0.00% Castro::apply_source_to_state() 20 4.254e-05 5.176e-05 6.254e-05 0.00% Castro::subcycle_advance_ctu() 10 4.532e-05 5.067e-05 5.629e-05 0.00% Amr::defBaseLevel() 1 3.726e-05 4.16e-05 4.59e-05 0.00% Castro::construct_new_gravity() 10 2.978e-05 3.639e-05 4.312e-05 0.00% Castro::construct_old_gravity() 10 3.312e-05 3.547e-05 4.291e-05 0.00% Castro::expand_state() 10 1.88e-05 2.459e-05 3.12e-05 0.00% Castro::check_for_nan() 20 2.087e-05 2.366e-05 2.942e-05 0.00% Castro::post_init() 1 1.377e-05 1.606e-05 2.229e-05 0.00% Castro::post_timestep() 10 1.44e-05 1.596e-05 1.852e-05 0.00% Castro::computeNewDt() 9 7.587e-06 8.629e-06 9.642e-06 0.00% Amr::InitializeInit() 1 2.612e-06 3.876e-06 9.303e-06 0.00% Castro::computeInitialDt() 2 4.595e-06 6.039e-06 7.525e-06 0.00% Amr::init() 1 1.976e-06 4.475e-06 7.105e-06 0.00% Amr::initialInit() 1 1.489e-06 2.712e-06 4.998e-06 0.00% Other 265 0.01582 0.01849 0.02109 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.409 3.41 3.411 100.00% Amr::coarseTimeStep() 10 3.213 3.213 3.213 94.20% Amr::timeStep() 10 3.2 3.2 3.202 93.87% Castro::advance() 10 3.184 3.184 3.185 93.37% Castro::subcycle_advance_ctu() 10 3.109 3.113 3.127 91.67% Castro::do_advance_ctu() 10 3.109 3.113 3.127 91.67% Castro::construct_ctu_hydro_source() 10 2.381 2.383 2.385 69.93% Gravity::make_radial_gravity() 21 0.303 0.3065 0.3169 9.29% AmrLevel::FillPatch() 41 0.1835 0.2062 0.2328 6.83% FillPatchIterator::Initialize 41 0.1525 0.1738 0.2041 5.98% Gravity::get_new_grav_vector() 11 0.201 0.202 0.203 5.95% Castro::construct_old_gravity() 10 0.1841 0.1889 0.1972 5.78% Gravity::get_old_grav_vector() 10 0.1835 0.1882 0.1965 5.76% Amr::init() 1 0.1841 0.1845 0.1852 5.43% Castro::construct_new_gravity() 10 0.1772 0.178 0.1789 5.24% Amr::initialInit() 1 0.1693 0.1699 0.1707 5.00% FillPatchIterator::FillFromLevel0() 41 0.111 0.1299 0.1691 4.96% FillPatchSingleLevel 41 0.1109 0.1298 0.169 4.96% Castro::initialize_do_advance() 10 0.1562 0.1628 0.1684 4.94% Amr::InitializeInit() 1 0.05555 0.0935 0.1413 4.14% Amr::defBaseLevel() 1 0.05554 0.0935 0.1413 4.14% FabArray::ParallelCopy() 41 0.08051 0.09895 0.1389 4.07% check_for_negative_density() 10 0.06265 0.09623 0.131 3.84% Castro::initData() 1 0.03762 0.076 0.1231 3.61% Castro::expand_state() 10 0.1012 0.1098 0.1217 3.57% Castro::estTimeStep() 21 0.02605 0.07815 0.1185 3.47% Castro::clean_state() 62 0.1133 0.1153 0.118 3.46% Amr::FinalizeInit() 1 0.02831 0.07643 0.1143 3.35% Castro::do_old_sources() 10 0.09106 0.0998 0.1072 3.14% FabArray::ParallelCopy_finish() 41 0.04001 0.05893 0.1037 3.04% amrex::Copy() 193 0.06652 0.0819 0.09452 2.77% Castro::computeInitialDt() 2 0.002512 0.05062 0.08837 2.59% FabArray::setVal() 143 0.05304 0.0662 0.07372 2.16% Castro::initialize_advance() 10 0.05348 0.06812 0.0726 2.13% Castro::do_new_sources() 10 0.05738 0.06215 0.06824 2.00% Castro::computeTemp() 63 0.06411 0.06521 0.06666 1.95% Castro::reset_internal_energy(MultiFab) 63 0.04598 0.04711 0.04828 1.42% Castro::reset_internal_energy(Fab) 1008 0.04571 0.04684 0.048 1.41% Castro::normalize_species() 62 0.04423 0.04487 0.04573 1.34% FabArray::ParallelCopy_nowait() 41 0.03515 0.03992 0.04146 1.22% StateDataPhysBCFunct::() 41 0.02854 0.03079 0.03329 0.98% StateData::FillBoundary(geom) 41 0.02841 0.03068 0.03319 0.97% Castro::construct_new_source() 50 0.02794 0.02961 0.03231 0.95% Gravity::interpolate_monopole_grav() 21 0.0254 0.02645 0.02794 0.82% Castro::construct_new_gravity_source() 10 0.02231 0.02364 0.02614 0.77% Castro::post_init() 1 0.02496 0.02531 0.02548 0.75% Castro::finalize_do_advance() 10 0.01338 0.01928 0.02373 0.70% Amr::writePlotFile() 2 0.02204 0.02215 0.02255 0.66% Castro::post_timestep() 10 0.01541 0.01597 0.01697 0.50% FabArray::setDomainBndry() 41 0.007667 0.01117 0.01388 0.41% Castro::apply_source_to_state() 20 0.01069 0.01204 0.01319 0.39% FabArray::Saxpy() 20 0.01065 0.01198 0.01314 0.39% VisMF::Write(FabArray) 2 0.008501 0.009628 0.01217 0.36% Castro::Castro() 1 0.009582 0.01108 0.01188 0.35% Castro::check_for_nan() 20 0.009685 0.01037 0.01169 0.34% MultiFab::contains_nan() 20 0.009663 0.01035 0.01166 0.34% Castro::computeNewDt() 9 0.00945 0.009456 0.009463 0.28% Castro::construct_old_source() 50 0.006678 0.008862 0.009461 0.28% Castro::construct_old_gravity_source() 10 0.006629 0.008798 0.009389 0.28% Castro::initMFs() 1 0.006586 0.007144 0.007658 0.22% Other 265 0.02592 0.02973 0.03382 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 35 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8669 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6743 KiB 6748 KiB 6753 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4553 KiB 4560 KiB 4583 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 200 KiB 224 KiB 254 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2798 KiB 2800 KiB 2801 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 226 KiB 229 KiB 237 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 42 KiB 61 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 76 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 70 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.11-12-g43a3256936fc) finalized