Initializing AMReX (25.11-17-ge7271974e848)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.11-17-ge7271974e848) initialized Starting run at 06:32:31 UTC on 2025-11-10. Successfully read inputs file ... Castro git describe: 25.11-4-gc33bdf510 AMReX git describe: 25.11-17-ge7271974e Microphysics git describe: 25.11-4-gdb6a5f31 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014468278 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.341054656 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.333171646 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.316894833 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.317021206 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.367582354 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.311713658 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.301844927 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.302255295 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.301285928 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.302791663 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007563016 seconds Ending run at 06:32:35 UTC on 2025-11-10. Run time = 3.368604104 Run time without initialization = 3.208542419 Average number of zones advanced per microsecond: 0.817 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3673 ... 3.3684 ... 3.3693 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2320 2.2826 2.3302 69.16% Gravity::make_radial_gravity() 21 0.2814 0.2864 0.3028 8.99% check_for_negative_density() 10 0.0341 0.08189 0.1371 4.07% Castro::initData() 1 0.03513 0.06715 0.09887 2.93% Castro::estTimeStep() 21 0.02669 0.06229 0.09578 2.84% amrex::Copy() 193 0.06225 0.07752 0.08593 2.55% FabArray::ParallelCopy_finish() 41 0.03835 0.04712 0.08116 2.41% FabArray::setVal() 143 0.05538 0.06601 0.07123 2.11% Castro::reset_internal_energy(Fab) 1008 0.04515 0.04628 0.04747 1.41% Castro::normalize_species() 62 0.04385 0.04462 0.046 1.37% FabArray::ParallelCopy_nowait() 41 0.03384 0.03964 0.04171 1.24% FillPatchIterator::Initialize 41 0.02747 0.03191 0.03461 1.03% StateData::FillBoundary(geom) 41 0.02743 0.0305 0.03279 0.97% Castro::construct_new_gravity_source() 10 0.02285 0.02426 0.0265 0.79% Gravity::interpolate_monopole_grav() 21 0.02543 0.02574 0.02622 0.78% Castro::computeTemp() 63 0.01722 0.01784 0.01837 0.55% Castro::initialize_do_advance() 10 0.01184 0.01617 0.01721 0.51% Castro::initialize_advance() 10 0.005287 0.0108 0.014 0.42% FabArray::Saxpy() 20 0.0105 0.01237 0.01339 0.40% FabArray::setDomainBndry() 41 0.008325 0.01055 0.01262 0.37% Amr::writePlotFile() 2 0.007153 0.009945 0.01249 0.37% VisMF::Write(FabArray) 2 0.008523 0.009607 0.0121 0.36% MultiFab::contains_nan() 20 0.009298 0.01032 0.01186 0.35% Castro::construct_old_gravity_source() 10 0.007067 0.009607 0.01017 0.30% Castro::initMFs() 1 0.006417 0.007026 0.00813 0.24% Castro::construct_new_source() 50 0.005409 0.006004 0.006499 0.19% Castro::enforce_min_density() 62 0.005626 0.005963 0.006428 0.19% main() 1 0.003833 0.004319 0.004655 0.14% Gravity::get_new_grav_vector() 11 0.002815 0.003433 0.003809 0.11% Amr::coarseTimeStep() 10 0.001052 0.002 0.002724 0.08% Gravity::get_old_grav_vector() 10 0.001682 0.001988 0.002242 0.07% Castro::finalize_do_advance() 10 0.0005945 0.001072 0.001486 0.04% AmrLevel::FillPatch() 41 0.0007304 0.0009646 0.001103 0.03% Amr::timeStep() 10 0.0001421 0.0001786 0.0003854 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002515 0.0002696 0.0002853 0.01% Castro::do_advance_ctu() 10 0.0001456 0.0001811 0.0002071 0.01% Castro::clean_state() 62 0.0001435 0.0001559 0.0001638 0.00% StateDataPhysBCFunct::() 41 9.147e-05 0.0001111 0.0001319 0.00% FillPatchIterator::FillFromLevel0() 41 8.527e-05 0.0001028 0.000115 0.00% FabArray::ParallelCopy() 41 7.449e-05 9.026e-05 0.0001029 0.00% Amr::FinalizeInit() 1 3.306e-06 1.493e-05 9.194e-05 0.00% Castro::Castro() 1 5.045e-05 7.56e-05 9.131e-05 0.00% Castro::do_old_sources() 10 6.607e-05 8.298e-05 8.904e-05 0.00% Castro::construct_old_source() 50 4.271e-05 6.689e-05 7.991e-05 0.00% FillPatchSingleLevel 41 6.037e-05 6.673e-05 7.502e-05 0.00% Castro::do_new_sources() 10 5.38e-05 6.07e-05 7.241e-05 0.00% Castro::subcycle_advance_ctu() 10 4.461e-05 5.216e-05 6.414e-05 0.00% Castro::apply_source_to_state() 20 3.654e-05 5.068e-05 5.694e-05 0.00% Castro::advance() 10 3.854e-05 4.435e-05 5.633e-05 0.00% Amr::defBaseLevel() 1 3.87e-05 4.612e-05 5.549e-05 0.00% Castro::construct_old_gravity() 10 3.038e-05 3.601e-05 4.407e-05 0.00% Castro::construct_new_gravity() 10 2.805e-05 3.397e-05 4.128e-05 0.00% Castro::check_for_nan() 20 2.029e-05 2.285e-05 2.708e-05 0.00% Castro::expand_state() 10 1.968e-05 2.282e-05 2.608e-05 0.00% Castro::post_init() 1 1.542e-05 1.706e-05 2.163e-05 0.00% Castro::post_timestep() 10 1.511e-05 1.638e-05 1.749e-05 0.00% Castro::computeNewDt() 9 8.47e-06 1.003e-05 1.573e-05 0.00% Amr::InitializeInit() 1 2.492e-06 3.859e-06 9.163e-06 0.00% Castro::computeInitialDt() 2 5.503e-06 6.588e-06 7.131e-06 0.00% Amr::init() 1 2.216e-06 3.941e-06 5.856e-06 0.00% Amr::initialInit() 1 1.942e-06 3.233e-06 5.104e-06 0.00% Other 203 0.01024 0.01257 0.01474 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.367 3.368 3.369 100.00% Amr::coarseTimeStep() 10 3.196 3.196 3.196 94.87% Amr::timeStep() 10 3.183 3.184 3.184 94.51% Castro::advance() 10 3.167 3.168 3.168 94.03% Castro::subcycle_advance_ctu() 10 3.092 3.096 3.111 92.32% Castro::do_advance_ctu() 10 3.092 3.096 3.111 92.32% Castro::construct_ctu_hydro_source() 10 2.382 2.385 2.39 70.92% Gravity::make_radial_gravity() 21 0.2981 0.3027 0.3154 9.36% Gravity::get_new_grav_vector() 11 0.2035 0.2048 0.206 6.12% AmrLevel::FillPatch() 41 0.177 0.1917 0.2038 6.05% Castro::construct_old_gravity() 10 0.1716 0.1768 0.1871 5.55% Gravity::get_old_grav_vector() 10 0.1709 0.1762 0.1865 5.53% Castro::construct_new_gravity() 10 0.1825 0.1831 0.1837 5.45% FillPatchIterator::Initialize 41 0.1475 0.1602 0.1794 5.32% Castro::initialize_do_advance() 10 0.1524 0.1595 0.1636 4.86% Amr::init() 1 0.1592 0.1597 0.1604 4.76% Amr::initialInit() 1 0.1444 0.1452 0.146 4.33% FillPatchIterator::FillFromLevel0() 41 0.1092 0.1177 0.1428 4.24% FillPatchSingleLevel 41 0.1091 0.1176 0.1428 4.24% check_for_negative_density() 10 0.0341 0.08189 0.1371 4.07% Amr::InitializeInit() 1 0.0567 0.08831 0.1201 3.57% Amr::defBaseLevel() 1 0.05669 0.08831 0.1201 3.57% Castro::clean_state() 62 0.112 0.1143 0.1171 3.48% Castro::expand_state() 10 0.09809 0.1072 0.1161 3.45% FabArray::ParallelCopy() 41 0.07882 0.08694 0.1152 3.42% Castro::initData() 1 0.03868 0.07097 0.1029 3.06% Castro::estTimeStep() 21 0.02669 0.06229 0.09578 2.84% Castro::do_old_sources() 10 0.08995 0.0926 0.0953 2.83% Amr::FinalizeInit() 1 0.02583 0.05688 0.0881 2.61% amrex::Copy() 193 0.06225 0.07752 0.08593 2.55% FabArray::ParallelCopy_finish() 41 0.03835 0.04712 0.08116 2.41% Castro::initialize_advance() 10 0.05327 0.06825 0.07245 2.15% FabArray::setVal() 143 0.05538 0.06601 0.07123 2.11% Castro::do_new_sources() 10 0.05998 0.0633 0.06877 2.04% Castro::computeTemp() 63 0.06279 0.06438 0.06566 1.95% Castro::computeInitialDt() 2 0.002339 0.03352 0.06483 1.92% Castro::reset_internal_energy(MultiFab) 63 0.0454 0.04655 0.04773 1.42% Castro::reset_internal_energy(Fab) 1008 0.04515 0.04628 0.04747 1.41% Castro::normalize_species() 62 0.04385 0.04462 0.046 1.37% FabArray::ParallelCopy_nowait() 41 0.03393 0.03973 0.04179 1.24% Castro::construct_new_source() 50 0.02826 0.03027 0.03299 0.98% StateDataPhysBCFunct::() 41 0.02752 0.03062 0.0329 0.98% StateData::FillBoundary(geom) 41 0.02743 0.0305 0.03279 0.97% Castro::construct_new_gravity_source() 10 0.02285 0.02426 0.0265 0.79% Gravity::interpolate_monopole_grav() 21 0.02543 0.02574 0.02622 0.78% Castro::finalize_do_advance() 10 0.01491 0.02018 0.02361 0.70% Castro::post_init() 1 0.02263 0.02294 0.02309 0.69% Amr::writePlotFile() 2 0.02206 0.02221 0.02278 0.68% Castro::post_timestep() 10 0.01522 0.01571 0.01629 0.48% Castro::apply_source_to_state() 20 0.01053 0.01242 0.01344 0.40% FabArray::Saxpy() 20 0.0105 0.01237 0.01339 0.40% FabArray::setDomainBndry() 41 0.008325 0.01055 0.01262 0.37% VisMF::Write(FabArray) 2 0.008523 0.009607 0.0121 0.36% Castro::Castro() 1 0.01022 0.01086 0.0119 0.35% Castro::check_for_nan() 20 0.00932 0.01034 0.01189 0.35% MultiFab::contains_nan() 20 0.009298 0.01032 0.01186 0.35% Castro::construct_old_source() 50 0.007109 0.009674 0.01024 0.30% Castro::construct_old_gravity_source() 10 0.007067 0.009607 0.01017 0.30% Castro::computeNewDt() 9 0.009665 0.009677 0.009685 0.29% Castro::initMFs() 1 0.006417 0.007026 0.00813 0.24% Castro::enforce_min_density() 62 0.005626 0.005963 0.006428 0.19% Other 203 0.02006 0.02379 0.02732 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 36 B 48 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8669 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6790 KiB 6796 KiB 6800 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4584 KiB 4591 KiB 4614 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 196 KiB 214 KiB 231 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2817 KiB 2820 KiB 2821 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 225 KiB 229 KiB 238 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 39 KiB 53 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 78 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 65 KiB 67 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.11-17-ge7271974e848) finalized