Initializing AMReX (25.11-17-ge7271974e848)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.11-17-ge7271974e848) initialized Starting run at 06:17:29 UTC on 2025-11-11. Successfully read inputs file ... Castro git describe: 25.11-4-gc33bdf510 AMReX git describe: 25.11-17-ge7271974e Microphysics git describe: 25.11-4-gdb6a5f31 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014907546 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.352874599 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.345141261 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.325729217 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.32680163 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.352716191 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.313001078 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.305491875 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.306680303 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.304749725 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.307770858 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007488038 seconds Ending run at 06:17:33 UTC on 2025-11-11. Run time = 3.422471886 Run time without initialization = 3.25394418 Average number of zones advanced per microsecond: 0.806 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4210 ... 3.4220 ... 3.4232 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2124 2.2863 2.3372 68.28% Gravity::make_radial_gravity() 21 0.2835 0.2895 0.3041 8.88% check_for_negative_density() 10 0.03767 0.08684 0.1623 4.74% Castro::initData() 1 0.03512 0.07005 0.1038 3.03% amrex::Copy() 193 0.08369 0.08992 0.09946 2.91% Castro::estTimeStep() 21 0.02511 0.06081 0.09814 2.87% FabArray::setVal() 143 0.06942 0.07339 0.07946 2.32% FabArray::ParallelCopy_finish() 41 0.03671 0.05116 0.0611 1.78% Castro::reset_internal_energy(Fab) 1008 0.04455 0.04634 0.04826 1.41% Castro::normalize_species() 62 0.04377 0.04484 0.04601 1.34% FabArray::ParallelCopy_nowait() 41 0.03978 0.04214 0.04356 1.27% FillPatchIterator::Initialize 41 0.03008 0.03533 0.03759 1.10% StateData::FillBoundary(geom) 41 0.02775 0.03195 0.03563 1.04% Gravity::interpolate_monopole_grav() 21 0.02573 0.02674 0.02743 0.80% Castro::construct_new_gravity_source() 10 0.02315 0.02398 0.02502 0.73% Castro::initialize_do_advance() 10 0.01661 0.01801 0.01861 0.54% Castro::computeTemp() 63 0.01718 0.01792 0.01859 0.54% Castro::initialize_advance() 10 0.01048 0.01254 0.01493 0.44% FabArray::setDomainBndry() 41 0.008634 0.01199 0.01421 0.42% FabArray::Saxpy() 20 0.01187 0.01311 0.01367 0.40% VisMF::Write(FabArray) 2 0.009302 0.00981 0.01211 0.35% MultiFab::contains_nan() 20 0.009589 0.01065 0.01153 0.34% Amr::writePlotFile() 2 0.007441 0.009881 0.01053 0.31% Castro::construct_old_gravity_source() 10 0.00914 0.009678 0.01041 0.30% Castro::initMFs() 1 0.006657 0.007158 0.007789 0.23% Castro::construct_new_source() 50 0.006268 0.006466 0.006691 0.20% main() 1 0.003912 0.00437 0.004907 0.14% Gravity::get_new_grav_vector() 11 0.003145 0.003744 0.004048 0.12% Gravity::get_old_grav_vector() 10 0.001696 0.002193 0.002765 0.08% Amr::coarseTimeStep() 10 0.001021 0.001536 0.002195 0.06% Castro::finalize_do_advance() 10 0.001287 0.001389 0.001867 0.05% AmrLevel::FillPatch() 41 0.0007755 0.001084 0.001214 0.04% Amr::timeStep() 10 0.0001455 0.0001857 0.0004126 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002629 0.0002738 0.0002863 0.01% Castro::do_advance_ctu() 10 0.0001586 0.0001924 0.000224 0.01% Castro::clean_state() 62 0.0001476 0.0001669 0.0001769 0.01% FillPatchIterator::FillFromLevel0() 41 0.000106 0.0001201 0.0001474 0.00% StateDataPhysBCFunct::() 41 0.0001024 0.0001216 0.0001382 0.00% FabArray::ParallelCopy() 41 8.625e-05 9.816e-05 0.0001251 0.00% Castro::do_old_sources() 10 8.103e-05 9.197e-05 0.000111 0.00% Amr::FinalizeInit() 1 3.316e-06 1.746e-05 0.0001075 0.00% Castro::Castro() 1 5.923e-05 7.675e-05 0.000105 0.00% FillPatchSingleLevel 41 6.2e-05 7.097e-05 8.572e-05 0.00% Castro::construct_old_source() 50 5.775e-05 6.906e-05 8.212e-05 0.00% Castro::apply_source_to_state() 20 4.682e-05 5.473e-05 7.114e-05 0.00% Castro::do_new_sources() 10 5.66e-05 6.319e-05 7.012e-05 0.00% Castro::subcycle_advance_ctu() 10 4.456e-05 5.246e-05 6.712e-05 0.00% Castro::advance() 10 4.372e-05 5.212e-05 6.701e-05 0.00% Amr::defBaseLevel() 1 3.861e-05 4.106e-05 4.688e-05 0.00% Castro::construct_old_gravity() 10 3.69e-05 3.981e-05 4.397e-05 0.00% Castro::construct_new_gravity() 10 3.236e-05 3.613e-05 3.928e-05 0.00% Castro::expand_state() 10 1.906e-05 2.457e-05 2.96e-05 0.00% Castro::check_for_nan() 20 2.161e-05 2.354e-05 2.734e-05 0.00% Castro::post_init() 1 1.627e-05 1.866e-05 2.722e-05 0.00% Castro::post_timestep() 10 1.483e-05 1.604e-05 1.739e-05 0.00% Castro::computeNewDt() 9 8.815e-06 9.647e-06 1.006e-05 0.00% Amr::init() 1 1.977e-06 3.852e-06 9.843e-06 0.00% Amr::InitializeInit() 1 2.532e-06 3.599e-06 9.133e-06 0.00% Castro::computeInitialDt() 2 5.628e-06 6.581e-06 7.686e-06 0.00% Amr::initialInit() 1 1.58e-06 3.993e-06 5.772e-06 0.00% Other 265 0.01656 0.01921 0.02125 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.421 3.422 3.423 100.00% Amr::coarseTimeStep() 10 3.242 3.242 3.242 94.70% Amr::timeStep() 10 3.229 3.23 3.23 94.36% Castro::advance() 10 3.213 3.214 3.214 93.89% Castro::subcycle_advance_ctu() 10 3.133 3.136 3.139 91.69% Castro::do_advance_ctu() 10 3.133 3.136 3.139 91.68% Castro::construct_ctu_hydro_source() 10 2.391 2.394 2.397 70.03% Gravity::make_radial_gravity() 21 0.3009 0.3072 0.3199 9.34% AmrLevel::FillPatch() 41 0.1911 0.2079 0.2235 6.53% Gravity::get_new_grav_vector() 11 0.2017 0.2032 0.2044 5.97% Castro::construct_old_gravity() 10 0.1851 0.1911 0.2016 5.89% Gravity::get_old_grav_vector() 10 0.1844 0.1904 0.201 5.87% FillPatchIterator::Initialize 41 0.1599 0.1731 0.1872 5.47% Castro::construct_new_gravity() 10 0.1791 0.1802 0.1808 5.28% Castro::initialize_do_advance() 10 0.1584 0.1675 0.1738 5.08% Amr::init() 1 0.1676 0.1682 0.1687 4.93% check_for_negative_density() 10 0.03767 0.08684 0.1623 4.74% Amr::initialInit() 1 0.1524 0.1531 0.1536 4.49% FillPatchIterator::FillFromLevel0() 41 0.1097 0.1257 0.1388 4.05% FillPatchSingleLevel 41 0.1096 0.1256 0.1387 4.05% Amr::InitializeInit() 1 0.05606 0.09155 0.1256 3.67% Amr::defBaseLevel() 1 0.05606 0.09155 0.1255 3.67% Castro::expand_state() 10 0.1037 0.1123 0.1184 3.46% Castro::clean_state() 62 0.1123 0.1149 0.118 3.45% Castro::do_old_sources() 10 0.09576 0.1009 0.1078 3.15% Castro::initData() 1 0.03927 0.07385 0.1073 3.13% FabArray::ParallelCopy() 41 0.07949 0.09349 0.1042 3.04% amrex::Copy() 193 0.08369 0.08992 0.09946 2.91% Castro::estTimeStep() 21 0.02511 0.06081 0.09814 2.87% Amr::FinalizeInit() 1 0.02714 0.06154 0.09749 2.85% FabArray::setVal() 143 0.06942 0.07339 0.07946 2.32% Castro::initialize_advance() 10 0.07206 0.0742 0.07688 2.25% Castro::computeInitialDt() 2 0.002327 0.03673 0.07259 2.12% Castro::do_new_sources() 10 0.06226 0.06483 0.06773 1.98% Castro::computeTemp() 63 0.06199 0.06454 0.06678 1.95% FabArray::ParallelCopy_finish() 41 0.03671 0.05116 0.0611 1.78% Castro::reset_internal_energy(MultiFab) 63 0.04481 0.04662 0.04855 1.42% Castro::reset_internal_energy(Fab) 1008 0.04455 0.04634 0.04826 1.41% Castro::normalize_species() 62 0.04377 0.04484 0.04601 1.34% FabArray::ParallelCopy_nowait() 41 0.03988 0.04224 0.04365 1.28% StateDataPhysBCFunct::() 41 0.02788 0.03207 0.03576 1.04% StateData::FillBoundary(geom) 41 0.02775 0.03195 0.03563 1.04% Castro::construct_new_source() 50 0.02942 0.03044 0.03171 0.93% Gravity::interpolate_monopole_grav() 21 0.02573 0.02674 0.02743 0.80% Castro::construct_new_gravity_source() 10 0.02315 0.02398 0.02502 0.73% Castro::post_init() 1 0.02427 0.02435 0.02444 0.71% Amr::writePlotFile() 2 0.02255 0.02265 0.02276 0.66% Castro::finalize_do_advance() 10 0.01272 0.01626 0.01847 0.54% Castro::post_timestep() 10 0.01539 0.01587 0.01662 0.49% FabArray::setDomainBndry() 41 0.008634 0.01199 0.01421 0.42% Castro::apply_source_to_state() 20 0.01192 0.01317 0.01373 0.40% FabArray::Saxpy() 20 0.01187 0.01311 0.01367 0.40% VisMF::Write(FabArray) 2 0.009302 0.00981 0.01211 0.35% Castro::Castro() 1 0.01023 0.0111 0.01189 0.35% Castro::check_for_nan() 20 0.009613 0.01067 0.01156 0.34% MultiFab::contains_nan() 20 0.009589 0.01065 0.01153 0.34% Castro::construct_old_source() 50 0.009208 0.009748 0.01047 0.31% Castro::construct_old_gravity_source() 10 0.00914 0.009678 0.01041 0.30% Castro::computeNewDt() 9 0.009193 0.009223 0.009247 0.27% Castro::initMFs() 1 0.006657 0.007158 0.007789 0.23% Other 265 0.02693 0.03072 0.03399 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 32 B 38 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8668 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6776 KiB 6783 KiB 6784 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4574 KiB 4577 KiB 4581 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 207 KiB 225 KiB 242 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2813 KiB 2816 KiB 2817 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 224 KiB 228 KiB 237 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 40 KiB 44 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 76 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 71 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.11-17-ge7271974e848) finalized