Initializing AMReX (25.11-20-ga7f0aed21606)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.11-20-ga7f0aed21606) initialized Starting run at 06:20:45 UTC on 2025-11-12. Successfully read inputs file ... Castro git describe: 25.11-4-gc33bdf510 AMReX git describe: 25.11-20-ga7f0aed21 Microphysics git describe: 25.11-4-gdb6a5f31 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.020852455 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.423821855 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.402509191 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.378797102 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.402429007 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.381733491 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.380068431 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.380250684 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.381285734 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.386557742 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.389591818 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.283873044 seconds Ending run at 06:20:49 UTC on 2025-11-12. Run time = 4.387737465 Run time without initialization = 4.198623518 Average number of zones advanced per microsecond: 0.624 Average number of zones advanced per microsecond per rank: 0.078 TinyProfiler total time across processes [min...avg...max]: 4.3860 ... 4.3873 ... 4.3878 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3386 2.5948 2.8005 63.83% check_for_negative_density() 10 0.03348 0.2457 0.5108 11.64% Gravity::make_radial_gravity() 21 0.2918 0.3133 0.3402 7.75% Amr::writePlotFile() 2 0.01021 0.2521 0.2891 6.59% UtilRenameDirectoryToOld() 2 6.06e-07 0.03122 0.2497 5.69% amrex::Copy() 193 0.1002 0.1172 0.1293 2.95% FabArray::setVal() 143 0.09403 0.1025 0.1072 2.44% Castro::estTimeStep() 21 0.02542 0.06095 0.104 2.37% Castro::initData() 1 0.03521 0.07233 0.1029 2.34% FabArray::ParallelCopy_finish() 41 0.05707 0.06691 0.08648 1.97% FabArray::ParallelCopy_nowait() 41 0.05562 0.06304 0.06755 1.54% FillPatchIterator::Initialize 41 0.04843 0.05521 0.06082 1.39% Castro::reset_internal_energy(Fab) 1008 0.04797 0.05198 0.05584 1.27% Castro::normalize_species() 62 0.04612 0.04853 0.05124 1.17% StateData::FillBoundary(geom) 41 0.0311 0.04088 0.04946 1.13% Castro::construct_new_gravity_source() 10 0.02875 0.0314 0.03374 0.77% Castro::initialize_do_advance() 10 0.02366 0.02601 0.02853 0.65% Gravity::interpolate_monopole_grav() 21 0.02529 0.02599 0.02648 0.60% FabArray::setDomainBndry() 41 0.01689 0.02057 0.0249 0.57% Castro::computeTemp() 63 0.01915 0.0205 0.02181 0.50% UtilCreateCleanDirectory() 2 5.89e-07 0.002672 0.02137 0.49% FabArray::Saxpy() 20 0.01789 0.01948 0.02136 0.49% VisMF::Write(FabArray) 2 0.01001 0.01321 0.01773 0.40% Castro::initialize_advance() 10 0.01532 0.01613 0.01697 0.39% Castro::construct_old_gravity_source() 10 0.01461 0.01559 0.01608 0.37% MultiFab::contains_nan() 20 0.01229 0.01374 0.0157 0.36% Castro::initMFs() 1 0.009071 0.01018 0.01142 0.26% Castro::construct_new_source() 50 0.007645 0.008526 0.009294 0.21% main() 1 0.005647 0.00687 0.007295 0.17% Gravity::get_new_grav_vector() 11 0.003879 0.005158 0.006233 0.14% Amr::coarseTimeStep() 10 0.0005561 0.002282 0.003844 0.09% Gravity::get_old_grav_vector() 10 0.002603 0.00312 0.003695 0.08% Castro::finalize_do_advance() 10 0.001346 0.001403 0.001462 0.03% AmrLevel::FillPatch() 41 0.001069 0.00116 0.001275 0.03% Amr::timeStep() 10 0.0001525 0.0002112 0.0003897 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003399 0.0003485 0.0003647 0.01% Castro::do_advance_ctu() 10 0.000213 0.0002383 0.0002698 0.01% Castro::clean_state() 62 0.0002003 0.0002147 0.0002433 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001536 0.0001698 0.0002056 0.00% StateDataPhysBCFunct::() 41 0.000122 0.0001592 0.0001866 0.00% Castro::Castro() 1 8.884e-05 0.0001197 0.0001606 0.00% FabArray::ParallelCopy() 41 0.0001272 0.0001411 0.0001589 0.00% Castro::do_old_sources() 10 0.000123 0.0001303 0.0001408 0.00% Castro::construct_old_source() 50 9.412e-05 0.000104 0.0001242 0.00% Amr::FinalizeInit() 1 4.254e-06 1.99e-05 0.0001208 0.00% FillPatchSingleLevel 41 9.21e-05 0.0001029 0.0001128 0.00% Castro::do_new_sources() 10 7.163e-05 8.077e-05 9.2e-05 0.00% Castro::subcycle_advance_ctu() 10 5.647e-05 7.308e-05 9.167e-05 0.00% Castro::apply_source_to_state() 20 6.616e-05 7.444e-05 7.964e-05 0.00% Castro::construct_new_gravity() 10 3.041e-05 4.564e-05 6.411e-05 0.00% Castro::construct_old_gravity() 10 4.006e-05 5.159e-05 6.373e-05 0.00% Castro::advance() 10 4.742e-05 5.624e-05 6.373e-05 0.00% Amr::defBaseLevel() 1 4.203e-05 4.775e-05 6.269e-05 0.00% Castro::expand_state() 10 3.626e-05 4.373e-05 5.533e-05 0.00% Castro::check_for_nan() 20 2.543e-05 3.02e-05 3.627e-05 0.00% Castro::post_timestep() 10 1.583e-05 1.998e-05 2.504e-05 0.00% Castro::post_init() 1 1.52e-05 1.788e-05 2.189e-05 0.00% Castro::computeNewDt() 9 8.083e-06 9.456e-06 1.181e-05 0.00% Amr::InitializeInit() 1 2.847e-06 4.113e-06 9.746e-06 0.00% Castro::computeInitialDt() 2 7.486e-06 8.447e-06 9.271e-06 0.00% Amr::init() 1 2.436e-06 3.577e-06 7.851e-06 0.00% Amr::initialInit() 1 2.56e-06 5.498e-06 7.843e-06 0.00% Other 261 0.02096 0.02414 0.02628 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.386 4.387 4.388 100.00% Amr::coarseTimeStep() 10 3.908 3.908 3.908 89.05% Amr::timeStep() 10 3.893 3.894 3.896 88.80% Castro::advance() 10 3.877 3.878 3.879 88.39% Castro::subcycle_advance_ctu() 10 3.768 3.771 3.779 86.13% Castro::do_advance_ctu() 10 3.768 3.771 3.779 86.12% Castro::construct_ctu_hydro_source() 10 2.856 2.863 2.87 65.41% check_for_negative_density() 10 0.03348 0.2457 0.5108 11.64% Gravity::make_radial_gravity() 21 0.3149 0.3369 0.3636 8.29% AmrLevel::FillPatch() 41 0.2721 0.2961 0.3189 7.27% Amr::writePlotFile() 2 0.3047 0.3049 0.305 6.95% FillPatchIterator::Initialize 41 0.2314 0.2473 0.2633 6.00% Castro::initialize_do_advance() 10 0.2209 0.2371 0.2553 5.82% UtilRenameDirectoryToOld() 2 6.06e-07 0.03122 0.2497 5.69% Gravity::get_new_grav_vector() 11 0.2301 0.2308 0.2319 5.28% Castro::construct_old_gravity() 10 0.1926 0.2102 0.2308 5.26% Gravity::get_old_grav_vector() 10 0.1915 0.2093 0.2298 5.24% Castro::construct_new_gravity() 10 0.1992 0.2004 0.2019 4.60% Amr::init() 1 0.1885 0.1886 0.1888 4.30% Castro::expand_state() 10 0.1468 0.1658 0.1871 4.26% FillPatchIterator::FillFromLevel0() 41 0.1625 0.1716 0.1817 4.14% FillPatchSingleLevel 41 0.1624 0.1714 0.1815 4.14% Amr::initialInit() 1 0.1675 0.1677 0.1679 3.83% Castro::do_old_sources() 10 0.1375 0.1408 0.1437 3.28% FabArray::ParallelCopy() 41 0.1228 0.1302 0.1424 3.24% Castro::clean_state() 62 0.1226 0.128 0.1347 3.07% Amr::InitializeInit() 1 0.06362 0.1019 0.1329 3.03% Amr::defBaseLevel() 1 0.06361 0.1019 0.1329 3.03% amrex::Copy() 193 0.1002 0.1172 0.1293 2.95% Castro::initData() 1 0.04031 0.07708 0.1083 2.47% FabArray::setVal() 143 0.09403 0.1025 0.1072 2.44% Castro::initialize_advance() 10 0.09395 0.1016 0.1054 2.40% Amr::FinalizeInit() 1 0.03468 0.06581 0.104 2.37% Castro::estTimeStep() 21 0.02542 0.06095 0.104 2.37% FabArray::ParallelCopy_finish() 41 0.05707 0.06691 0.08648 1.97% Castro::do_new_sources() 10 0.07386 0.07948 0.08416 1.92% Castro::computeTemp() 63 0.06747 0.07283 0.07732 1.76% Castro::computeInitialDt() 2 0.002633 0.03364 0.07191 1.64% FabArray::ParallelCopy_nowait() 41 0.05575 0.06318 0.06769 1.54% Castro::reset_internal_energy(MultiFab) 63 0.04832 0.05233 0.05618 1.28% Castro::reset_internal_energy(Fab) 1008 0.04797 0.05198 0.05584 1.27% Castro::normalize_species() 62 0.04612 0.04853 0.05124 1.17% StateDataPhysBCFunct::() 41 0.03122 0.04104 0.04964 1.13% StateData::FillBoundary(geom) 41 0.0311 0.04088 0.04946 1.13% Castro::construct_new_source() 50 0.03639 0.03992 0.04291 0.98% Castro::construct_new_gravity_source() 10 0.02875 0.0314 0.03374 0.77% Castro::post_init() 1 0.03153 0.03175 0.0319 0.73% Castro::finalize_do_advance() 10 0.01283 0.01931 0.02689 0.61% Gravity::interpolate_monopole_grav() 21 0.02529 0.02599 0.02648 0.60% FabArray::setDomainBndry() 41 0.01689 0.02057 0.0249 0.57% Castro::apply_source_to_state() 20 0.01797 0.01955 0.02144 0.49% UtilCreateCleanDirectory() 2 5.89e-07 0.002672 0.02137 0.49% FabArray::Saxpy() 20 0.01789 0.01948 0.02136 0.49% Castro::Castro() 1 0.01425 0.01657 0.0182 0.41% VisMF::Write(FabArray) 2 0.01001 0.01321 0.01773 0.40% Castro::post_timestep() 10 0.01515 0.01626 0.01762 0.40% Castro::construct_old_source() 50 0.0147 0.0157 0.01617 0.37% Castro::construct_old_gravity_source() 10 0.01461 0.01559 0.01608 0.37% Castro::check_for_nan() 20 0.01232 0.01377 0.01573 0.36% MultiFab::contains_nan() 20 0.01229 0.01374 0.0157 0.36% Castro::initMFs() 1 0.009071 0.01018 0.01142 0.26% Castro::computeNewDt() 9 0.009414 0.00942 0.009425 0.21% Other 261 0.0345 0.03907 0.04256 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 26 B 31 B 47 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 11 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8668 KiB 8670 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6821 KiB 6825 KiB 6828 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7136 KiB 7141 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4290 KiB 4294 KiB 4304 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 232 KiB 256 KiB 281 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 17 KiB 19 KiB 24 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2649 KiB 2651 KiB 2652 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 182 KiB 195 KiB 211 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 42 KiB 45 KiB 48 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 67 KiB 67 KiB 67 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 56 KiB 61 KiB 67 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.11-20-ga7f0aed21606) finalized