Initializing AMReX (25.11-20-ga7f0aed21606)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.11-20-ga7f0aed21606) initialized Starting run at 06:17:41 UTC on 2025-11-13. Successfully read inputs file ... Castro git describe: 25.11-4-gc33bdf510 AMReX git describe: 25.11-20-ga7f0aed21 Microphysics git describe: 25.11-5-g3224b375 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.020913381 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.417895621 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.390107076 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.384573224 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.406647333 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.384199703 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.380725662 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.379219436 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.38306511 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.384026888 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.38843463 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.012524927 seconds Ending run at 06:17:45 UTC on 2025-11-13. Run time = 4.10952553 Run time without initialization = 3.920116127 Average number of zones advanced per microsecond: 0.669 Average number of zones advanced per microsecond per rank: 0.084 TinyProfiler total time across processes [min...avg...max]: 4.1061 ... 4.1089 ... 4.1109 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.3095 2.6015 2.8310 68.86% check_for_negative_density() 10 0.01016 0.2452 0.5456 13.27% Gravity::make_radial_gravity() 21 0.2845 0.3033 0.3336 8.11% amrex::Copy() 193 0.1001 0.119 0.1334 3.25% Castro::estTimeStep() 21 0.0288 0.06343 0.1071 2.61% FabArray::setVal() 143 0.08897 0.1019 0.1068 2.60% Castro::initData() 1 0.03464 0.07031 0.1043 2.54% FabArray::ParallelCopy_finish() 41 0.05688 0.06481 0.08382 2.04% FabArray::ParallelCopy_nowait() 41 0.05511 0.06171 0.06517 1.59% FillPatchIterator::Initialize 41 0.04957 0.05632 0.0616 1.50% Castro::reset_internal_energy(Fab) 1008 0.05024 0.0526 0.05471 1.33% Castro::normalize_species() 62 0.04561 0.04642 0.0475 1.16% StateData::FillBoundary(geom) 41 0.03257 0.03967 0.04586 1.12% Castro::construct_new_gravity_source() 10 0.0292 0.0314 0.03375 0.82% Castro::initialize_do_advance() 10 0.02385 0.02532 0.02711 0.66% Gravity::interpolate_monopole_grav() 21 0.02541 0.026 0.02673 0.65% FabArray::setDomainBndry() 41 0.01628 0.02183 0.02568 0.62% FabArray::Saxpy() 20 0.0181 0.01975 0.02141 0.52% Castro::computeTemp() 63 0.01891 0.02002 0.02072 0.50% VisMF::Write(FabArray) 2 0.012 0.01384 0.01763 0.43% Castro::construct_old_gravity_source() 10 0.01417 0.01547 0.01727 0.42% Castro::initialize_advance() 10 0.01542 0.01601 0.01655 0.40% Amr::writePlotFile() 2 0.01018 0.01415 0.01602 0.39% MultiFab::contains_nan() 20 0.01171 0.01291 0.0144 0.35% Castro::initMFs() 1 0.009447 0.01075 0.01236 0.30% Castro::construct_new_source() 50 0.007399 0.008301 0.00902 0.22% main() 1 0.004798 0.00715 0.008208 0.20% Gravity::get_new_grav_vector() 11 0.004211 0.005378 0.006095 0.15% Gravity::get_old_grav_vector() 10 0.002135 0.002813 0.003289 0.08% Amr::coarseTimeStep() 10 0.001052 0.001403 0.001802 0.04% AmrLevel::FillPatch() 41 0.001176 0.00151 0.001755 0.04% Castro::finalize_do_advance() 10 0.001279 0.001466 0.00152 0.04% Amr::timeStep() 10 0.0001368 0.0002185 0.0005619 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0003134 0.0003238 0.000337 0.01% Castro::do_advance_ctu() 10 0.0001865 0.0002342 0.000258 0.01% Castro::clean_state() 62 0.0001866 0.0002137 0.0002326 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001385 0.0001595 0.0001779 0.00% StateDataPhysBCFunct::() 41 0.000142 0.0001568 0.0001701 0.00% Castro::Castro() 1 8.877e-05 0.0001194 0.0001526 0.00% FabArray::ParallelCopy() 41 0.0001137 0.0001354 0.0001496 0.00% Castro::do_old_sources() 10 0.0001139 0.0001244 0.0001373 0.00% Amr::FinalizeInit() 1 4.528e-06 2.192e-05 0.0001373 0.00% Castro::construct_old_source() 50 9.093e-05 0.000102 0.0001186 0.00% FillPatchSingleLevel 41 8.389e-05 9.508e-05 0.0001034 0.00% Castro::apply_source_to_state() 20 6.235e-05 7.644e-05 8.966e-05 0.00% Castro::do_new_sources() 10 7.113e-05 7.728e-05 8.351e-05 0.00% Castro::subcycle_advance_ctu() 10 6.012e-05 7.188e-05 8.068e-05 0.00% Castro::advance() 10 4.97e-05 5.573e-05 7.071e-05 0.00% Amr::defBaseLevel() 1 4.149e-05 4.68e-05 6.484e-05 0.00% Castro::construct_new_gravity() 10 2.957e-05 4.359e-05 5.727e-05 0.00% Castro::construct_old_gravity() 10 3.833e-05 4.689e-05 5.22e-05 0.00% Castro::expand_state() 10 2.955e-05 3.906e-05 4.97e-05 0.00% Castro::check_for_nan() 20 2.287e-05 2.884e-05 4.059e-05 0.00% Castro::post_init() 1 1.648e-05 2.264e-05 3.475e-05 0.00% Castro::post_timestep() 10 1.804e-05 2.028e-05 2.435e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.146e-05 1.347e-05 1.564e-05 0.00% Castro::computeNewDt() 9 8.811e-06 9.871e-06 1.114e-05 0.00% Amr::InitializeInit() 1 2.661e-06 4.013e-06 1.071e-05 0.00% Castro::computeInitialDt() 2 7.494e-06 8.016e-06 8.912e-06 0.00% Amr::init() 1 3.215e-06 6.224e-06 7.849e-06 0.00% Amr::initialInit() 1 1.746e-06 2.915e-06 7.153e-06 0.00% Other 264 0.02036 0.02479 0.02859 0.70% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.106 4.109 4.111 100.00% Amr::coarseTimeStep() 10 3.899 3.899 3.899 94.86% Amr::timeStep() 10 3.887 3.887 3.888 94.57% Castro::advance() 10 3.87 3.871 3.871 94.17% Castro::subcycle_advance_ctu() 10 3.762 3.765 3.776 91.86% Castro::do_advance_ctu() 10 3.762 3.765 3.776 91.86% Castro::construct_ctu_hydro_source() 10 2.863 2.869 2.876 69.95% check_for_negative_density() 10 0.01016 0.2452 0.5456 13.27% Gravity::make_radial_gravity() 21 0.3094 0.328 0.3573 8.69% AmrLevel::FillPatch() 41 0.276 0.2948 0.3134 7.62% FillPatchIterator::Initialize 41 0.234 0.245 0.2551 6.21% Castro::initialize_do_advance() 10 0.2241 0.2378 0.2529 6.15% Gravity::get_new_grav_vector() 11 0.2256 0.2266 0.2275 5.53% Castro::construct_old_gravity() 10 0.1892 0.204 0.2265 5.51% Gravity::get_old_grav_vector() 10 0.1883 0.2032 0.2258 5.49% Castro::construct_new_gravity() 10 0.1976 0.1986 0.2 4.87% Amr::init() 1 0.189 0.1894 0.1902 4.63% Castro::expand_state() 10 0.1521 0.1675 0.1834 4.46% FillPatchIterator::FillFromLevel0() 41 0.161 0.1669 0.1722 4.19% FillPatchSingleLevel 41 0.1608 0.1667 0.172 4.18% Amr::initialInit() 1 0.1677 0.1683 0.1691 4.11% Castro::do_old_sources() 10 0.1354 0.1381 0.1419 3.45% FabArray::ParallelCopy() 41 0.1223 0.1268 0.1392 3.39% Amr::InitializeInit() 1 0.06537 0.1008 0.1358 3.30% Amr::defBaseLevel() 1 0.06536 0.1008 0.1358 3.30% amrex::Copy() 193 0.1001 0.119 0.1334 3.25% Castro::clean_state() 62 0.1233 0.1259 0.1273 3.10% Castro::initData() 1 0.03882 0.07501 0.1087 2.64% Castro::estTimeStep() 21 0.0288 0.06343 0.1071 2.61% FabArray::setVal() 143 0.08897 0.1019 0.1068 2.60% Castro::initialize_advance() 10 0.08967 0.101 0.1037 2.52% Amr::FinalizeInit() 1 0.03196 0.06742 0.1037 2.52% FabArray::ParallelCopy_finish() 41 0.05688 0.06481 0.08382 2.04% Castro::do_new_sources() 10 0.07344 0.07901 0.08298 2.02% Castro::computeTemp() 63 0.0709 0.07294 0.07537 1.83% Castro::computeInitialDt() 2 0.002578 0.03793 0.07418 1.80% FabArray::ParallelCopy_nowait() 41 0.05525 0.06184 0.06528 1.59% Castro::reset_internal_energy(MultiFab) 63 0.05056 0.05292 0.05504 1.34% Castro::reset_internal_energy(Fab) 1008 0.05024 0.0526 0.05471 1.33% Castro::normalize_species() 62 0.04561 0.04642 0.0475 1.16% StateDataPhysBCFunct::() 41 0.03271 0.03983 0.04603 1.12% StateData::FillBoundary(geom) 41 0.03257 0.03967 0.04586 1.12% Castro::construct_new_source() 50 0.0366 0.03971 0.04268 1.04% Amr::writePlotFile() 2 0.03372 0.03377 0.03388 0.82% Castro::construct_new_gravity_source() 10 0.0292 0.0314 0.03375 0.82% Castro::post_init() 1 0.02892 0.02913 0.02927 0.71% Gravity::interpolate_monopole_grav() 21 0.02541 0.026 0.02673 0.65% FabArray::setDomainBndry() 41 0.01628 0.02183 0.02568 0.62% Castro::finalize_do_advance() 10 0.01224 0.01752 0.02494 0.61% Castro::apply_source_to_state() 20 0.01816 0.01983 0.0215 0.52% FabArray::Saxpy() 20 0.0181 0.01975 0.02141 0.52% Castro::Castro() 1 0.01519 0.01705 0.01864 0.45% VisMF::Write(FabArray) 2 0.012 0.01384 0.01763 0.43% Castro::construct_old_source() 50 0.01426 0.01557 0.01737 0.42% Castro::construct_old_gravity_source() 10 0.01417 0.01547 0.01727 0.42% Castro::post_timestep() 10 0.0157 0.01602 0.01664 0.40% Castro::check_for_nan() 20 0.01173 0.01294 0.01444 0.35% MultiFab::contains_nan() 20 0.01171 0.01291 0.0144 0.35% Castro::initMFs() 1 0.009447 0.01075 0.01236 0.30% Castro::computeNewDt() 9 0.009434 0.009462 0.009493 0.23% AmrLevel::AmrLevel(dm) 1 0.007747 0.008283 0.008819 0.21% Other 264 0.02626 0.03172 0.03678 0.89% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 30 B 35 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 12 MiB 13 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8653 KiB 8661 KiB 8664 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6795 KiB 6800 KiB 6802 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7138 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4575 KiB 4577 KiB 4585 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 254 KiB 273 KiB 294 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 20 KiB 21 KiB 25 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2821 KiB 2825 KiB 2826 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 191 KiB 203 KiB 221 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 43 KiB 47 KiB 51 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2028 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 70 KiB 70 KiB 71 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 58 KiB 63 KiB 70 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.11-20-ga7f0aed21606) finalized