Initializing AMReX (25.11-21-g010ee1fd8340)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.11-21-g010ee1fd8340) initialized Starting run at 06:33:36 UTC on 2025-11-14. Successfully read inputs file ... Castro git describe: 25.11-4-gc33bdf510 AMReX git describe: 25.11-21-g010ee1fd8 Microphysics git describe: 25.11-5-g3224b375 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014847773 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.345808576 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.340394852 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.323592436 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.324062996 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.367350559 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.312223181 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.303864047 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.305021467 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.303958854 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.306850771 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00776393 seconds Ending run at 06:33:40 UTC on 2025-11-14. Run time = 3.413013203 Run time without initialization = 3.245757644 Average number of zones advanced per microsecond: 0.808 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4118 ... 3.4124 ... 3.4130 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2331 2.2847 2.3365 68.46% Gravity::make_radial_gravity() 21 0.2767 0.2844 0.2916 8.54% check_for_negative_density() 10 0.04746 0.09029 0.1508 4.42% Castro::initData() 1 0.03492 0.06976 0.1029 3.02% Castro::estTimeStep() 21 0.02384 0.06042 0.09826 2.88% amrex::Copy() 193 0.08151 0.08538 0.09387 2.75% FabArray::setVal() 143 0.06881 0.07139 0.07516 2.20% FabArray::ParallelCopy_finish() 41 0.04039 0.05282 0.06639 1.95% FabArray::ParallelCopy_nowait() 41 0.04083 0.04414 0.05281 1.55% Castro::reset_internal_energy(Fab) 1008 0.04281 0.04572 0.04865 1.43% Castro::normalize_species() 62 0.04416 0.04514 0.04681 1.37% FillPatchIterator::Initialize 41 0.02957 0.03433 0.03634 1.06% StateData::FillBoundary(geom) 41 0.02816 0.03148 0.03434 1.01% Gravity::interpolate_monopole_grav() 21 0.02517 0.0259 0.0265 0.78% Castro::construct_new_gravity_source() 10 0.02352 0.02465 0.02623 0.77% Castro::initialize_do_advance() 10 0.01684 0.01786 0.01888 0.55% Castro::computeTemp() 63 0.01658 0.01773 0.01857 0.54% Castro::initialize_advance() 10 0.01047 0.01249 0.01494 0.44% FabArray::Saxpy() 20 0.01258 0.01351 0.01465 0.43% FabArray::setDomainBndry() 41 0.008468 0.01148 0.01425 0.42% VisMF::Write(FabArray) 2 0.009408 0.009803 0.01222 0.36% MultiFab::contains_nan() 20 0.00944 0.01067 0.0119 0.35% Castro::construct_old_gravity_source() 10 0.01042 0.01072 0.01105 0.32% Amr::writePlotFile() 2 0.007421 0.01015 0.01063 0.31% Castro::initMFs() 1 0.006515 0.006629 0.006742 0.20% Castro::construct_new_source() 50 0.006089 0.006269 0.006451 0.19% main() 1 0.00386 0.0041 0.004355 0.13% Gravity::get_new_grav_vector() 11 0.002936 0.003496 0.003819 0.11% Gravity::get_old_grav_vector() 10 0.001785 0.002192 0.002827 0.08% Amr::coarseTimeStep() 10 0.000799 0.001439 0.00225 0.07% Castro::finalize_do_advance() 10 0.001234 0.001316 0.001401 0.04% AmrLevel::FillPatch() 41 0.00111 0.001164 0.001264 0.04% Amr::timeStep() 10 0.0001348 0.0001857 0.0004054 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000267 0.000276 0.0002939 0.01% Castro::do_advance_ctu() 10 0.0001613 0.0001864 0.0002107 0.01% Castro::clean_state() 62 0.0001541 0.0001675 0.0001748 0.01% StateDataPhysBCFunct::() 41 0.0001183 0.000134 0.0001507 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001005 0.0001201 0.000149 0.00% Castro::Castro() 1 7.188e-05 9.367e-05 0.0001294 0.00% FabArray::ParallelCopy() 41 9.107e-05 0.0001041 0.0001236 0.00% Castro::do_old_sources() 10 8.301e-05 9.264e-05 0.0001041 0.00% Amr::FinalizeInit() 1 3.78e-06 1.413e-05 8.179e-05 0.00% Castro::construct_old_source() 50 6.204e-05 7.303e-05 8.177e-05 0.00% FillPatchSingleLevel 41 6.866e-05 7.264e-05 7.854e-05 0.00% Castro::apply_source_to_state() 20 4.457e-05 5.505e-05 7.132e-05 0.00% Castro::subcycle_advance_ctu() 10 4.758e-05 5.588e-05 6.835e-05 0.00% Castro::do_new_sources() 10 5.467e-05 6.045e-05 6.724e-05 0.00% Castro::advance() 10 3.807e-05 4.455e-05 5.148e-05 0.00% Amr::defBaseLevel() 1 3.763e-05 4.147e-05 4.936e-05 0.00% Castro::construct_old_gravity() 10 3.267e-05 3.759e-05 4.365e-05 0.00% Castro::construct_new_gravity() 10 3.144e-05 3.501e-05 3.901e-05 0.00% Castro::expand_state() 10 2.094e-05 2.579e-05 2.94e-05 0.00% Castro::post_timestep() 10 1.29e-05 1.769e-05 2.844e-05 0.00% Castro::post_init() 1 1.585e-05 1.876e-05 2.595e-05 0.00% Castro::check_for_nan() 20 2.193e-05 2.397e-05 2.507e-05 0.00% Castro::computeNewDt() 9 9.082e-06 9.78e-06 1.045e-05 0.00% Amr::InitializeInit() 1 2.483e-06 3.687e-06 9.403e-06 0.00% Castro::computeInitialDt() 2 6.148e-06 7.046e-06 8.352e-06 0.00% Amr::init() 1 2.163e-06 4.2e-06 6.325e-06 0.00% Amr::initialInit() 1 2.147e-06 3.454e-06 5.685e-06 0.00% Other 265 0.01632 0.01889 0.02071 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.412 3.412 3.413 100.00% Amr::coarseTimeStep() 10 3.234 3.234 3.234 94.75% Amr::timeStep() 10 3.221 3.222 3.222 94.42% Castro::advance() 10 3.206 3.206 3.206 93.94% Castro::subcycle_advance_ctu() 10 3.125 3.129 3.131 91.74% Castro::do_advance_ctu() 10 3.125 3.129 3.131 91.73% Castro::construct_ctu_hydro_source() 10 2.381 2.395 2.404 70.44% Gravity::make_radial_gravity() 21 0.2932 0.3015 0.3071 9.00% AmrLevel::FillPatch() 41 0.1991 0.2107 0.2224 6.52% Gravity::get_new_grav_vector() 11 0.2021 0.2035 0.2052 6.01% Castro::construct_old_gravity() 10 0.1746 0.1801 0.1842 5.40% Gravity::get_old_grav_vector() 10 0.1739 0.1794 0.1835 5.38% Castro::construct_new_gravity() 10 0.1791 0.1805 0.1817 5.32% FillPatchIterator::Initialize 41 0.1673 0.1748 0.1807 5.29% Castro::initialize_do_advance() 10 0.1623 0.167 0.1721 5.04% Amr::init() 1 0.166 0.1665 0.167 4.89% Amr::initialInit() 1 0.151 0.1514 0.1519 4.45% check_for_negative_density() 10 0.04746 0.09029 0.1508 4.42% FillPatchIterator::FillFromLevel0() 41 0.1238 0.129 0.136 3.98% FillPatchSingleLevel 41 0.1237 0.1288 0.1358 3.98% Amr::InitializeInit() 1 0.0564 0.09134 0.1245 3.65% Amr::defBaseLevel() 1 0.0564 0.09133 0.1245 3.65% Castro::do_old_sources() 10 0.09743 0.1077 0.1195 3.50% Castro::clean_state() 62 0.1099 0.1144 0.1186 3.48% Castro::expand_state() 10 0.1073 0.112 0.1172 3.43% FabArray::ParallelCopy() 41 0.0915 0.09716 0.1074 3.15% Castro::initData() 1 0.03892 0.07377 0.1071 3.14% Castro::estTimeStep() 21 0.02384 0.06042 0.09826 2.88% Amr::FinalizeInit() 1 0.02702 0.06004 0.09552 2.80% amrex::Copy() 193 0.08151 0.08538 0.09387 2.75% Castro::initialize_advance() 10 0.07148 0.07319 0.07708 2.26% FabArray::setVal() 143 0.06881 0.07139 0.07516 2.20% Castro::computeInitialDt() 2 0.002344 0.03535 0.07078 2.07% Castro::do_new_sources() 10 0.06162 0.06483 0.06759 1.98% Castro::computeTemp() 63 0.05971 0.06372 0.06749 1.98% FabArray::ParallelCopy_finish() 41 0.04039 0.05282 0.06639 1.95% FabArray::ParallelCopy_nowait() 41 0.04093 0.04423 0.0529 1.55% Castro::reset_internal_energy(MultiFab) 63 0.0431 0.046 0.04893 1.43% Castro::reset_internal_energy(Fab) 1008 0.04281 0.04572 0.04865 1.43% Castro::normalize_species() 62 0.04416 0.04514 0.04681 1.37% StateDataPhysBCFunct::() 41 0.02831 0.03161 0.03449 1.01% StateData::FillBoundary(geom) 41 0.02816 0.03148 0.03434 1.01% Castro::construct_new_source() 50 0.02961 0.03092 0.03262 0.96% Gravity::interpolate_monopole_grav() 21 0.02517 0.0259 0.0265 0.78% Castro::construct_new_gravity_source() 10 0.02352 0.02465 0.02623 0.77% Castro::post_init() 1 0.02406 0.02421 0.02429 0.71% Amr::writePlotFile() 2 0.02286 0.02294 0.02302 0.67% Castro::finalize_do_advance() 10 0.01346 0.01709 0.0199 0.58% Castro::post_timestep() 10 0.01501 0.01576 0.01666 0.49% Castro::apply_source_to_state() 20 0.01262 0.01356 0.01472 0.43% FabArray::Saxpy() 20 0.01258 0.01351 0.01465 0.43% FabArray::setDomainBndry() 41 0.008468 0.01148 0.01425 0.42% VisMF::Write(FabArray) 2 0.009408 0.009803 0.01222 0.36% Castro::check_for_nan() 20 0.009465 0.0107 0.01192 0.35% MultiFab::contains_nan() 20 0.00944 0.01067 0.0119 0.35% Castro::Castro() 1 0.01096 0.01131 0.01162 0.34% Castro::construct_old_source() 50 0.01049 0.01079 0.01113 0.33% Castro::construct_old_gravity_source() 10 0.01042 0.01072 0.01105 0.32% Castro::computeNewDt() 9 0.009304 0.009315 0.009328 0.27% Castro::initMFs() 1 0.006515 0.006629 0.006742 0.20% Other 265 0.02651 0.03005 0.03283 0.96% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 32 B 36 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8671 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6781 KiB 6786 KiB 6788 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4575 KiB 4581 KiB 4584 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 218 KiB 230 KiB 241 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2815 KiB 2817 KiB 2818 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 218 KiB 225 KiB 229 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 40 KiB 42 KiB 46 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 76 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 65 KiB 67 KiB 69 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.11-21-g010ee1fd8340) finalized