Initializing AMReX (25.11-35-g35bdc36df60c)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.11-35-g35bdc36df60c) initialized Starting run at 06:33:16 UTC on 2025-11-17. Successfully read inputs file ... Castro git describe: 25.11-4-gc33bdf510 AMReX git describe: 25.11-35-g35bdc36df Microphysics git describe: 25.11-6-gf74f3694 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014411623 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.342899041 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.329831276 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.34832407 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.319650095 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.377684601 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.313825592 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.302431188 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.302168516 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.302629126 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.301117381 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007504041 seconds Ending run at 06:33:20 UTC on 2025-11-17. Run time = 3.421484178 Run time without initialization = 3.25303572 Average number of zones advanced per microsecond: 0.806 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4213 ... 3.4214 ... 3.4215 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2472 2.2657 2.3087 67.47% Gravity::make_radial_gravity() 21 0.2835 0.29 0.3028 8.85% check_for_negative_density() 10 0.0704 0.1152 0.1358 3.97% FabArray::ParallelCopy_finish() 41 0.03828 0.06678 0.1058 3.09% Castro::initData() 1 0.03423 0.07131 0.1044 3.05% Castro::estTimeStep() 21 0.02579 0.06285 0.1008 2.95% amrex::Copy() 193 0.06557 0.08294 0.1004 2.93% FabArray::setVal() 143 0.05765 0.06726 0.07355 2.15% Castro::reset_internal_energy(Fab) 1008 0.04278 0.04561 0.04745 1.39% Castro::normalize_species() 62 0.04386 0.04451 0.04521 1.32% FabArray::ParallelCopy_nowait() 41 0.03452 0.04007 0.04213 1.23% FillPatchIterator::Initialize 41 0.02786 0.03392 0.0381 1.11% Gravity::interpolate_monopole_grav() 21 0.02581 0.02722 0.03382 0.99% StateData::FillBoundary(geom) 41 0.02914 0.03061 0.03298 0.96% Castro::construct_new_gravity_source() 10 0.02108 0.02291 0.02487 0.73% Castro::computeTemp() 63 0.0163 0.01782 0.01883 0.55% Castro::initialize_do_advance() 10 0.0115 0.01638 0.01788 0.52% Castro::initialize_advance() 10 0.005284 0.01059 0.0137 0.40% FabArray::Saxpy() 20 0.01 0.01189 0.01292 0.38% FabArray::setDomainBndry() 41 0.007669 0.01097 0.01265 0.37% VisMF::Write(FabArray) 2 0.00869 0.00961 0.01198 0.35% Amr::writePlotFile() 2 0.007255 0.01001 0.01194 0.35% MultiFab::contains_nan() 20 0.009699 0.01052 0.01123 0.33% Castro::construct_old_gravity_source() 10 0.006184 0.008568 0.009108 0.27% Castro::initMFs() 1 0.007426 0.007637 0.0082 0.24% Castro::construct_new_source() 50 0.00568 0.005992 0.006163 0.18% main() 1 0.004089 0.004221 0.004296 0.13% Gravity::get_new_grav_vector() 11 0.002809 0.003447 0.003844 0.11% Gravity::get_old_grav_vector() 10 0.001615 0.002205 0.002797 0.08% Amr::coarseTimeStep() 10 0.0009781 0.001716 0.002539 0.07% Castro::finalize_do_advance() 10 0.0006623 0.001179 0.001292 0.04% AmrLevel::FillPatch() 41 0.0008105 0.001089 0.001207 0.04% Amr::timeStep() 10 0.000139 0.0001808 0.0003863 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002625 0.0002717 0.0002833 0.01% Castro::do_advance_ctu() 10 0.0001503 0.0001793 0.0002055 0.01% Castro::clean_state() 62 0.0001506 0.0001579 0.0001691 0.00% StateDataPhysBCFunct::() 41 0.0001103 0.0001291 0.0001564 0.00% Castro::Castro() 1 8.067e-05 0.0001102 0.0001546 0.00% FillPatchIterator::FillFromLevel0() 41 9.526e-05 0.0001066 0.0001151 0.00% FabArray::ParallelCopy() 41 8.05e-05 8.962e-05 9.903e-05 0.00% Castro::do_old_sources() 10 8.401e-05 9.104e-05 9.778e-05 0.00% Castro::construct_old_source() 50 5.964e-05 6.675e-05 8.205e-05 0.00% FillPatchSingleLevel 41 6.276e-05 6.975e-05 7.851e-05 0.00% Castro::do_new_sources() 10 5.338e-05 6.183e-05 7.327e-05 0.00% Amr::FinalizeInit() 1 3.605e-06 1.303e-05 7.217e-05 0.00% Amr::defBaseLevel() 1 4.123e-05 5.285e-05 6.509e-05 0.00% Castro::advance() 10 3.55e-05 4.503e-05 6.266e-05 0.00% Castro::apply_source_to_state() 20 4.46e-05 4.975e-05 5.663e-05 0.00% Castro::construct_old_gravity() 10 3.363e-05 4.007e-05 5.485e-05 0.00% Castro::subcycle_advance_ctu() 10 4.456e-05 4.718e-05 4.951e-05 0.00% Castro::check_for_nan() 20 2.199e-05 2.701e-05 4.161e-05 0.00% Castro::construct_new_gravity() 10 3.043e-05 3.367e-05 3.723e-05 0.00% Castro::expand_state() 10 1.934e-05 2.317e-05 2.746e-05 0.00% Castro::post_init() 1 1.478e-05 1.773e-05 2.235e-05 0.00% Castro::post_timestep() 10 1.4e-05 1.533e-05 1.719e-05 0.00% Amr::init() 1 1.575e-06 3.439e-06 1.05e-05 0.00% Castro::computeNewDt() 9 7.9e-06 9.105e-06 1.037e-05 0.00% Amr::InitializeInit() 1 2.696e-06 4.108e-06 9.523e-06 0.00% Castro::computeInitialDt() 2 4.741e-06 6.504e-06 7.582e-06 0.00% Amr::initialInit() 1 1.634e-06 4.548e-06 5.83e-06 0.00% Other 265 0.01672 0.01878 0.02052 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.421 3.421 3.422 100.00% Amr::coarseTimeStep() 10 3.241 3.241 3.241 94.73% Amr::timeStep() 10 3.228 3.229 3.23 94.40% Castro::advance() 10 3.213 3.213 3.214 93.93% Castro::subcycle_advance_ctu() 10 3.138 3.143 3.157 92.26% Castro::do_advance_ctu() 10 3.138 3.143 3.157 92.25% Castro::construct_ctu_hydro_source() 10 2.4 2.401 2.405 70.28% Gravity::make_radial_gravity() 21 0.2996 0.3063 0.3145 9.19% AmrLevel::FillPatch() 41 0.1918 0.2158 0.2328 6.80% FillPatchIterator::Initialize 41 0.1582 0.1828 0.2064 6.03% Gravity::get_new_grav_vector() 11 0.2042 0.2051 0.2062 6.03% Castro::construct_old_gravity() 10 0.1884 0.1945 0.2033 5.94% Gravity::get_old_grav_vector() 10 0.1876 0.1938 0.2025 5.92% Castro::construct_new_gravity() 10 0.1827 0.1833 0.1838 5.37% Castro::initialize_do_advance() 10 0.1574 0.1644 0.1709 4.99% FillPatchIterator::FillFromLevel0() 41 0.1102 0.138 0.1709 4.99% FillPatchSingleLevel 41 0.1101 0.1379 0.1707 4.99% Amr::init() 1 0.1678 0.168 0.1681 4.91% Amr::initialInit() 1 0.1532 0.1534 0.1535 4.49% FabArray::ParallelCopy() 41 0.07994 0.107 0.1405 4.11% check_for_negative_density() 10 0.0704 0.1152 0.1358 3.97% Amr::InitializeInit() 1 0.05705 0.09422 0.1276 3.73% Amr::defBaseLevel() 1 0.05705 0.09422 0.1276 3.73% Castro::expand_state() 10 0.1052 0.1113 0.1235 3.61% Castro::clean_state() 62 0.109 0.1135 0.1159 3.39% Castro::initData() 1 0.03804 0.07522 0.1085 3.17% FabArray::ParallelCopy_finish() 41 0.03828 0.06678 0.1058 3.09% Castro::do_old_sources() 10 0.09413 0.1006 0.1039 3.04% Castro::estTimeStep() 21 0.02579 0.06285 0.1008 2.95% amrex::Copy() 193 0.06557 0.08294 0.1004 2.93% Amr::FinalizeInit() 1 0.02583 0.05914 0.09642 2.82% FabArray::setVal() 143 0.05765 0.06726 0.07355 2.15% Castro::computeInitialDt() 2 0.002299 0.0356 0.0728 2.13% Castro::initialize_advance() 10 0.05301 0.06701 0.072 2.10% Castro::do_new_sources() 10 0.05574 0.06134 0.06619 1.93% Castro::computeTemp() 63 0.05966 0.06371 0.06606 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04305 0.04588 0.04772 1.39% Castro::reset_internal_energy(Fab) 1008 0.04278 0.04561 0.04745 1.39% Castro::normalize_species() 62 0.04386 0.04451 0.04521 1.32% FabArray::ParallelCopy_nowait() 41 0.03463 0.04017 0.04222 1.23% Gravity::interpolate_monopole_grav() 21 0.02581 0.02722 0.03382 0.99% StateDataPhysBCFunct::() 41 0.02925 0.03074 0.03311 0.97% StateData::FillBoundary(geom) 41 0.02914 0.03061 0.03298 0.96% Castro::construct_new_source() 50 0.02677 0.0289 0.03076 0.90% Castro::construct_new_gravity_source() 10 0.02108 0.02291 0.02487 0.73% Castro::finalize_do_advance() 10 0.01429 0.01916 0.0245 0.72% Castro::post_init() 1 0.02283 0.02311 0.02325 0.68% Amr::writePlotFile() 2 0.02216 0.02225 0.0225 0.66% Castro::post_timestep() 10 0.01476 0.01555 0.0162 0.47% Castro::Castro() 1 0.01189 0.01245 0.01308 0.38% Castro::apply_source_to_state() 20 0.01005 0.01194 0.01297 0.38% FabArray::Saxpy() 20 0.01 0.01189 0.01292 0.38% FabArray::setDomainBndry() 41 0.007669 0.01097 0.01265 0.37% VisMF::Write(FabArray) 2 0.00869 0.00961 0.01198 0.35% Castro::check_for_nan() 20 0.009728 0.01055 0.01127 0.33% MultiFab::contains_nan() 20 0.009699 0.01052 0.01123 0.33% Castro::computeNewDt() 9 0.009267 0.009279 0.009304 0.27% Castro::construct_old_source() 50 0.006245 0.008635 0.009177 0.27% Castro::construct_old_gravity_source() 10 0.006184 0.008568 0.009108 0.27% Castro::initMFs() 1 0.007426 0.007637 0.0082 0.24% Other 265 0.02744 0.0301 0.03229 0.94% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 38 B 42 B 46 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8669 KiB 8671 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6779 KiB 6785 KiB 6789 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4581 KiB 4589 KiB 4611 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 209 KiB 229 KiB 248 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2814 KiB 2817 KiB 2817 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 223 KiB 228 KiB 234 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 34 KiB 44 KiB 61 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 77 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 72 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.11-35-g35bdc36df60c) finalized