Initializing AMReX (25.11-37-g56eece6b85a3)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.11-37-g56eece6b85a3) initialized Starting run at 06:30:59 UTC on 2025-11-18. Successfully read inputs file ... Castro git describe: 25.11-4-gc33bdf510 AMReX git describe: 25.11-37-g56eece6b8 Microphysics git describe: 25.11-6-gf74f3694 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014843379 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.349998355 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.339365185 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.333443426 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.32380518 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.369324712 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.310744896 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.303238236 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.303453675 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.303570295 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.304820442 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007608171 seconds Ending run at 06:31:03 UTC on 2025-11-18. Run time = 3.438115274 Run time without initialization = 3.25468962 Average number of zones advanced per microsecond: 0.805 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4377 ... 3.4380 ... 3.4382 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1839 2.2746 2.3321 67.83% Gravity::make_radial_gravity() 21 0.2868 0.3 0.3205 9.32% check_for_negative_density() 10 0.03988 0.09875 0.1929 5.61% Castro::initData() 1 0.03412 0.07096 0.1179 3.43% Castro::estTimeStep() 21 0.02445 0.07582 0.1167 3.39% amrex::Copy() 193 0.07164 0.08491 0.1038 3.02% FabArray::ParallelCopy_finish() 41 0.03604 0.05813 0.08959 2.61% FabArray::setVal() 143 0.05532 0.06909 0.07663 2.23% Castro::reset_internal_energy(Fab) 1008 0.04249 0.04794 0.05623 1.64% Castro::normalize_species() 62 0.04415 0.04499 0.04597 1.34% FabArray::ParallelCopy_nowait() 41 0.03753 0.03997 0.04133 1.20% FillPatchIterator::Initialize 41 0.0292 0.03349 0.03671 1.07% StateData::FillBoundary(geom) 41 0.02682 0.0307 0.03363 0.98% Gravity::interpolate_monopole_grav() 21 0.02596 0.0275 0.02962 0.86% Castro::construct_new_gravity_source() 10 0.021 0.02349 0.0254 0.74% Castro::computeTemp() 63 0.01664 0.01823 0.02002 0.58% Castro::initialize_do_advance() 10 0.0143 0.01686 0.01812 0.53% Castro::initialize_advance() 10 0.009297 0.01195 0.01428 0.42% FabArray::setDomainBndry() 41 0.008549 0.01141 0.01392 0.40% MultiFab::contains_nan() 20 0.009732 0.01085 0.01346 0.39% VisMF::Write(FabArray) 2 0.009309 0.009966 0.0134 0.39% FabArray::Saxpy() 20 0.0107 0.01222 0.01318 0.38% Amr::writePlotFile() 2 0.007229 0.01007 0.01077 0.31% Castro::construct_old_gravity_source() 10 0.007059 0.008802 0.009325 0.27% Castro::initMFs() 1 0.006512 0.007032 0.008466 0.25% Castro::construct_new_source() 50 0.005293 0.006104 0.00647 0.19% main() 1 0.003998 0.00437 0.004823 0.14% Gravity::get_new_grav_vector() 11 0.002682 0.003414 0.003757 0.11% Amr::coarseTimeStep() 10 0.0006901 0.001446 0.002423 0.07% Gravity::get_old_grav_vector() 10 0.001641 0.002093 0.002401 0.07% Castro::finalize_do_advance() 10 0.0006223 0.001108 0.001318 0.04% AmrLevel::FillPatch() 41 0.0008313 0.0009676 0.001122 0.03% Amr::timeStep() 10 0.0001296 0.0001826 0.0004659 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002595 0.0002824 0.0003667 0.01% Castro::do_advance_ctu() 10 0.000157 0.000182 0.0002186 0.01% Castro::clean_state() 62 0.0001389 0.0001547 0.0001693 0.00% StateDataPhysBCFunct::() 41 0.0001071 0.0001222 0.0001389 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001032 0.0001107 0.0001154 0.00% FabArray::ParallelCopy() 41 8.209e-05 9.013e-05 0.0001076 0.00% Castro::Castro() 1 5.977e-05 8.158e-05 0.0001025 0.00% Castro::do_old_sources() 10 7.5e-05 8.436e-05 9.923e-05 0.00% Amr::FinalizeInit() 1 3.428e-06 1.522e-05 9.4e-05 0.00% FillPatchSingleLevel 41 6.41e-05 6.825e-05 7.796e-05 0.00% Amr::defBaseLevel() 1 3.586e-05 4.949e-05 7.305e-05 0.00% Castro::construct_old_source() 50 4.864e-05 6.094e-05 6.66e-05 0.00% Castro::do_new_sources() 10 5.532e-05 6.02e-05 6.508e-05 0.00% Castro::advance() 10 3.909e-05 4.478e-05 6.205e-05 0.00% Castro::construct_old_gravity() 10 3.302e-05 4.004e-05 6.204e-05 0.00% Castro::apply_source_to_state() 20 4.621e-05 5.24e-05 5.779e-05 0.00% Castro::subcycle_advance_ctu() 10 4.577e-05 5.065e-05 5.386e-05 0.00% Castro::construct_new_gravity() 10 2.863e-05 3.462e-05 4.333e-05 0.00% Castro::check_for_nan() 20 2.128e-05 2.644e-05 3.255e-05 0.00% Castro::expand_state() 10 2.07e-05 2.372e-05 2.882e-05 0.00% Castro::post_init() 1 1.382e-05 1.732e-05 2.393e-05 0.00% Castro::post_timestep() 10 1.382e-05 1.615e-05 1.997e-05 0.00% Amr::InitializeInit() 1 2.676e-06 4.706e-06 1.473e-05 0.00% Castro::computeNewDt() 9 8.708e-06 9.273e-06 1.069e-05 0.00% Castro::computeInitialDt() 2 5.082e-06 6.972e-06 8.72e-06 0.00% Amr::initialInit() 1 1.576e-06 2.215e-06 5.092e-06 0.00% Amr::init() 1 1.76e-06 4.219e-06 5.033e-06 0.00% Other 265 0.01494 0.01882 0.02077 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.438 3.438 3.438 100.00% Amr::coarseTimeStep() 10 3.242 3.242 3.242 94.30% Amr::timeStep() 10 3.229 3.23 3.231 93.97% Castro::advance() 10 3.213 3.214 3.214 93.49% Castro::subcycle_advance_ctu() 10 3.135 3.141 3.156 91.81% Castro::do_advance_ctu() 10 3.135 3.141 3.156 91.80% Castro::construct_ctu_hydro_source() 10 2.391 2.394 2.396 69.69% Gravity::make_radial_gravity() 21 0.3104 0.3174 0.3335 9.70% AmrLevel::FillPatch() 41 0.1918 0.206 0.2208 6.42% Castro::construct_old_gravity() 10 0.1914 0.1979 0.2144 6.23% Gravity::get_old_grav_vector() 10 0.1902 0.1972 0.2137 6.22% Gravity::get_new_grav_vector() 11 0.2041 0.2062 0.2071 6.02% FillPatchIterator::Initialize 41 0.1588 0.1742 0.1951 5.67% check_for_negative_density() 10 0.03988 0.09875 0.1929 5.61% Amr::init() 1 0.1825 0.1834 0.1836 5.34% Castro::construct_new_gravity() 10 0.1811 0.1826 0.1836 5.34% Castro::initialize_do_advance() 10 0.1601 0.1663 0.1691 4.92% Amr::initialInit() 1 0.1675 0.1685 0.1689 4.91% FillPatchIterator::FillFromLevel0() 41 0.1115 0.1293 0.1545 4.49% FillPatchSingleLevel 41 0.1114 0.1292 0.1544 4.49% Amr::InitializeInit() 1 0.05535 0.09252 0.1399 4.07% Amr::defBaseLevel() 1 0.05534 0.09252 0.1399 4.07% FabArray::ParallelCopy() 41 0.07755 0.09829 0.1273 3.70% Castro::clean_state() 62 0.1092 0.1168 0.1273 3.70% Castro::initData() 1 0.03812 0.07486 0.1216 3.54% Castro::expand_state() 10 0.1023 0.1111 0.1199 3.49% Castro::estTimeStep() 21 0.02445 0.07582 0.1167 3.39% Amr::FinalizeInit() 1 0.0282 0.07594 0.1133 3.29% Castro::do_old_sources() 10 0.09323 0.09903 0.1056 3.07% amrex::Copy() 193 0.07164 0.08491 0.1038 3.02% FabArray::ParallelCopy_finish() 41 0.03604 0.05813 0.08959 2.61% Castro::computeInitialDt() 2 0.002496 0.05045 0.0878 2.55% FabArray::setVal() 143 0.05532 0.06909 0.07663 2.23% Castro::computeTemp() 63 0.0594 0.06646 0.07662 2.23% Castro::initialize_advance() 10 0.05373 0.06992 0.07616 2.22% Castro::do_new_sources() 10 0.05914 0.06353 0.06772 1.97% Castro::reset_internal_energy(MultiFab) 63 0.04276 0.04823 0.0566 1.65% Castro::reset_internal_energy(Fab) 1008 0.04249 0.04794 0.05623 1.64% Castro::normalize_species() 62 0.04415 0.04499 0.04597 1.34% FabArray::ParallelCopy_nowait() 41 0.03763 0.04007 0.04143 1.20% StateDataPhysBCFunct::() 41 0.02695 0.03082 0.03375 0.98% StateData::FillBoundary(geom) 41 0.02682 0.0307 0.03363 0.98% Castro::construct_new_source() 50 0.02629 0.0296 0.03187 0.93% Gravity::interpolate_monopole_grav() 21 0.02596 0.0275 0.02962 0.86% Castro::construct_new_gravity_source() 10 0.021 0.02349 0.0254 0.74% Castro::post_init() 1 0.02478 0.02498 0.02517 0.73% Amr::writePlotFile() 2 0.02239 0.02262 0.02278 0.66% Castro::finalize_do_advance() 10 0.0126 0.01686 0.02117 0.62% Castro::post_timestep() 10 0.01529 0.01585 0.01627 0.47% FabArray::setDomainBndry() 41 0.008549 0.01141 0.01392 0.40% Castro::check_for_nan() 20 0.009753 0.01087 0.0135 0.39% MultiFab::contains_nan() 20 0.009732 0.01085 0.01346 0.39% VisMF::Write(FabArray) 2 0.009309 0.009966 0.0134 0.39% Castro::apply_source_to_state() 20 0.01074 0.01228 0.01324 0.39% FabArray::Saxpy() 20 0.0107 0.01222 0.01318 0.38% Castro::Castro() 1 0.0106 0.01105 0.01196 0.35% Castro::computeNewDt() 9 0.009621 0.009626 0.009631 0.28% Castro::construct_old_source() 50 0.007108 0.008863 0.009391 0.27% Castro::construct_old_gravity_source() 10 0.007059 0.008802 0.009325 0.27% Castro::initMFs() 1 0.006512 0.007032 0.008466 0.25% Other 265 0.02486 0.03026 0.03331 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 30 B 35 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8669 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6752 KiB 6754 KiB 6756 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4555 KiB 4563 KiB 4583 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 207 KiB 222 KiB 237 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2800 KiB 2803 KiB 2805 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 230 KiB 235 KiB 247 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 34 KiB 42 KiB 56 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 77 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 73 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.11-37-g56eece6b85a3) finalized