Initializing AMReX (25.11-39-g89409f8c5d9a)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.11-39-g89409f8c5d9a) initialized Starting run at 06:17:23 UTC on 2025-11-19. Successfully read inputs file ... Castro git describe: 25.11-7-gc9f724d8e AMReX git describe: 25.11-39-g89409f8c5 Microphysics git describe: 25.11-6-gf74f3694 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014421512 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.352409892 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.338556206 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.317933095 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.31659893 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.362065715 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.310059901 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.301333048 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.325181457 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.318511523 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.312587207 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.010226216 seconds Ending run at 06:17:26 UTC on 2025-11-19. Run time = 3.437520449 Run time without initialization = 3.270968365 Average number of zones advanced per microsecond: 0.801 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.4360 ... 3.4367 ... 3.4375 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1976 2.2883 2.3692 68.92% Gravity::make_radial_gravity() 21 0.2808 0.2909 0.308 8.96% check_for_negative_density() 10 0.04024 0.1251 0.2175 6.33% Castro::estTimeStep() 21 0.02403 0.06443 0.1054 3.07% Castro::initData() 1 0.03422 0.06938 0.1033 3.01% FabArray::ParallelCopy_finish() 41 0.03748 0.04751 0.08846 2.57% amrex::Copy() 193 0.06395 0.07878 0.0873 2.54% FabArray::setVal() 143 0.05355 0.06663 0.07228 2.10% Castro::normalize_species() 62 0.04368 0.0461 0.05039 1.47% Castro::reset_internal_energy(Fab) 1008 0.04418 0.04655 0.04873 1.42% FabArray::ParallelCopy_nowait() 41 0.03515 0.04036 0.04208 1.22% FillPatchIterator::Initialize 41 0.02742 0.03231 0.03466 1.01% StateData::FillBoundary(geom) 41 0.0263 0.03089 0.03386 0.98% Gravity::interpolate_monopole_grav() 21 0.0258 0.02641 0.02691 0.78% Castro::construct_new_gravity_source() 10 0.02241 0.0242 0.02646 0.77% Castro::computeTemp() 63 0.01738 0.01795 0.01867 0.54% Castro::initialize_do_advance() 10 0.01138 0.0164 0.01798 0.52% VisMF::Write(FabArray) 2 0.009225 0.01015 0.01577 0.46% Castro::initialize_advance() 10 0.005327 0.01073 0.01395 0.41% FabArray::Saxpy() 20 0.01079 0.01247 0.0134 0.39% FabArray::setDomainBndry() 41 0.007618 0.01096 0.0131 0.38% Amr::writePlotFile() 2 0.0071 0.01169 0.01254 0.36% MultiFab::contains_nan() 20 0.009555 0.01045 0.01173 0.34% Castro::construct_old_gravity_source() 10 0.006948 0.009588 0.01009 0.29% Castro::initMFs() 1 0.006631 0.007092 0.008541 0.25% Castro::construct_new_source() 50 0.00562 0.00613 0.006671 0.19% main() 1 0.003824 0.004308 0.004878 0.14% Gravity::get_new_grav_vector() 11 0.002756 0.003423 0.003693 0.11% Amr::coarseTimeStep() 10 0.001188 0.00244 0.00333 0.10% Gravity::get_old_grav_vector() 10 0.001544 0.00202 0.002411 0.07% Castro::finalize_do_advance() 10 0.0005562 0.001131 0.001317 0.04% AmrLevel::FillPatch() 41 0.0007082 0.001148 0.001267 0.04% Amr::timeStep() 10 0.0001232 0.0001759 0.000362 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000249 0.0002707 0.0003073 0.01% Castro::do_advance_ctu() 10 0.0001607 0.0001801 0.000205 0.01% Castro::clean_state() 62 0.000135 0.0001526 0.0001624 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001004 0.0001082 0.0001246 0.00% StateDataPhysBCFunct::() 41 9.685e-05 0.0001089 0.0001209 0.00% FabArray::ParallelCopy() 41 8.049e-05 8.758e-05 0.0001031 0.00% Castro::do_old_sources() 10 7.939e-05 8.901e-05 0.0001027 0.00% Castro::Castro() 1 5.923e-05 7.883e-05 0.0001005 0.00% Amr::FinalizeInit() 1 2.897e-06 1.387e-05 8.097e-05 0.00% FillPatchSingleLevel 41 6.121e-05 6.741e-05 7.604e-05 0.00% Castro::do_new_sources() 10 5.483e-05 6.395e-05 7.531e-05 0.00% Castro::construct_old_source() 50 5.381e-05 6.439e-05 7.054e-05 0.00% Castro::subcycle_advance_ctu() 10 4.449e-05 5.181e-05 6.877e-05 0.00% Amr::defBaseLevel() 1 3.382e-05 4.056e-05 5.767e-05 0.00% Castro::apply_source_to_state() 20 4.486e-05 5.092e-05 5.48e-05 0.00% Castro::advance() 10 3.57e-05 4.318e-05 4.965e-05 0.00% Castro::construct_old_gravity() 10 3.59e-05 3.943e-05 4.641e-05 0.00% Castro::construct_new_gravity() 10 3.056e-05 3.701e-05 4.437e-05 0.00% Castro::expand_state() 10 2.118e-05 2.518e-05 3.378e-05 0.00% Castro::check_for_nan() 20 2.259e-05 2.602e-05 3.182e-05 0.00% Castro::post_timestep() 10 1.24e-05 1.549e-05 2.205e-05 0.00% Castro::post_init() 1 1.435e-05 1.579e-05 1.916e-05 0.00% Amr::InitializeInit() 1 2.472e-06 4.762e-06 1.043e-05 0.00% Castro::computeNewDt() 9 8.566e-06 9.33e-06 1.01e-05 0.00% Castro::computeInitialDt() 2 5.261e-06 6.726e-06 8.722e-06 0.00% Amr::init() 1 2.151e-06 4.243e-06 5.079e-06 0.00% Amr::initialInit() 1 1.449e-06 2.136e-06 5.054e-06 0.00% Other 265 0.01498 0.01889 0.0212 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.436 3.437 3.438 100.00% Amr::coarseTimeStep() 10 3.256 3.256 3.256 94.72% Amr::timeStep() 10 3.242 3.243 3.244 94.37% Castro::advance() 10 3.226 3.227 3.227 93.88% Castro::subcycle_advance_ctu() 10 3.149 3.154 3.169 92.20% Castro::do_advance_ctu() 10 3.149 3.154 3.169 92.20% Castro::construct_ctu_hydro_source() 10 2.431 2.434 2.438 70.92% Gravity::make_radial_gravity() 21 0.2977 0.3076 0.3213 9.35% check_for_negative_density() 10 0.04024 0.1251 0.2175 6.33% AmrLevel::FillPatch() 41 0.1811 0.1949 0.2104 6.12% Gravity::get_new_grav_vector() 11 0.2028 0.2042 0.206 5.99% Castro::construct_old_gravity() 10 0.1756 0.1826 0.1946 5.66% Gravity::get_old_grav_vector() 10 0.1749 0.1819 0.194 5.64% FillPatchIterator::Initialize 41 0.1494 0.1625 0.1854 5.39% Castro::construct_new_gravity() 10 0.1816 0.1825 0.1838 5.35% Amr::init() 1 0.1649 0.1659 0.1664 4.84% Castro::initialize_do_advance() 10 0.157 0.1629 0.1663 4.84% Amr::initialInit() 1 0.1503 0.1517 0.1523 4.43% FillPatchIterator::FillFromLevel0() 41 0.1086 0.1192 0.1504 4.37% FillPatchSingleLevel 41 0.1085 0.1191 0.1503 4.37% Amr::InitializeInit() 1 0.05543 0.09116 0.1255 3.65% Amr::defBaseLevel() 1 0.05543 0.09116 0.1254 3.65% FabArray::ParallelCopy() 41 0.07803 0.08806 0.1238 3.60% Castro::clean_state() 62 0.1118 0.1161 0.1207 3.51% Castro::expand_state() 10 0.102 0.1101 0.1193 3.47% Castro::initData() 1 0.0381 0.07334 0.1068 3.11% Castro::estTimeStep() 21 0.02403 0.06443 0.1054 3.07% Castro::do_old_sources() 10 0.09041 0.09355 0.09704 2.82% Amr::FinalizeInit() 1 0.02573 0.06056 0.09656 2.81% FabArray::ParallelCopy_finish() 41 0.03748 0.04751 0.08846 2.57% amrex::Copy() 193 0.06395 0.07878 0.0873 2.54% Castro::initialize_advance() 10 0.05329 0.06876 0.07462 2.17% Castro::computeInitialDt() 2 0.002259 0.03715 0.07311 2.13% FabArray::setVal() 143 0.05355 0.06663 0.07228 2.10% Castro::do_new_sources() 10 0.05979 0.06382 0.06971 2.03% Castro::computeTemp() 63 0.06183 0.06477 0.06764 1.97% Castro::normalize_species() 62 0.04368 0.0461 0.05039 1.47% Castro::reset_internal_energy(MultiFab) 63 0.04445 0.04682 0.04901 1.43% Castro::reset_internal_energy(Fab) 1008 0.04418 0.04655 0.04873 1.42% FabArray::ParallelCopy_nowait() 41 0.03526 0.04046 0.04217 1.23% StateDataPhysBCFunct::() 41 0.0264 0.031 0.03398 0.99% StateData::FillBoundary(geom) 41 0.0263 0.03089 0.03386 0.98% Castro::construct_new_source() 50 0.02803 0.03033 0.03283 0.96% Gravity::interpolate_monopole_grav() 21 0.0258 0.02641 0.02691 0.78% Castro::construct_new_gravity_source() 10 0.02241 0.0242 0.02646 0.77% Amr::writePlotFile() 2 0.02436 0.02447 0.0249 0.72% Castro::finalize_do_advance() 10 0.01281 0.01892 0.02403 0.70% Castro::post_init() 1 0.02248 0.02296 0.02309 0.67% Castro::post_timestep() 10 0.0154 0.0161 0.01702 0.50% VisMF::Write(FabArray) 2 0.009225 0.01015 0.01577 0.46% Castro::apply_source_to_state() 20 0.01083 0.01252 0.01346 0.39% FabArray::Saxpy() 20 0.01079 0.01247 0.0134 0.39% FabArray::setDomainBndry() 41 0.007618 0.01096 0.0131 0.38% Castro::Castro() 1 0.01058 0.01101 0.01193 0.35% Castro::check_for_nan() 20 0.009578 0.01048 0.01175 0.34% MultiFab::contains_nan() 20 0.009555 0.01045 0.01173 0.34% Castro::construct_old_source() 50 0.007002 0.009653 0.01016 0.30% Castro::construct_old_gravity_source() 10 0.006948 0.009588 0.01009 0.29% Castro::computeNewDt() 9 0.009501 0.009509 0.009522 0.28% Castro::initMFs() 1 0.006631 0.007092 0.008541 0.25% Other 265 0.02511 0.0305 0.0341 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 27 B 32 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8668 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6788 KiB 6790 KiB 6792 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7139 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4576 KiB 4585 KiB 4603 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 198 KiB 214 KiB 233 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 22 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2812 KiB 2815 KiB 2816 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 220 KiB 228 KiB 238 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 34 KiB 39 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 76 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 65 KiB 68 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.11-39-g89409f8c5d9a) finalized