Initializing AMReX (25.11-40-g510212089b59)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.11-40-g510212089b59) initialized Starting run at 06:32:31 UTC on 2025-11-20. Successfully read inputs file ... Castro git describe: 25.11-7-gc9f724d8e AMReX git describe: 25.11-40-g510212089 Microphysics git describe: 25.11-6-gf74f3694 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014838218 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.344293912 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.341086019 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.325225377 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.323190098 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.372653826 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.311393056 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.302104831 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.301440148 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.302959112 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.302293247 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00763764 seconds Ending run at 06:32:34 UTC on 2025-11-20. Run time = 3.427284472 Run time without initialization = 3.239412786 Average number of zones advanced per microsecond: 0.809 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4220 ... 3.4257 ... 3.4273 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2269 2.2793 2.3418 68.33% Gravity::make_radial_gravity() 21 0.2814 0.288 0.294 8.58% check_for_negative_density() 10 0.01301 0.07756 0.1339 3.91% Castro::estTimeStep() 21 0.02692 0.07755 0.1174 3.43% Castro::initData() 1 0.03435 0.0703 0.1146 3.34% amrex::Copy() 193 0.08045 0.08767 0.1003 2.93% FabArray::setVal() 143 0.06633 0.07174 0.07879 2.30% FabArray::ParallelCopy_finish() 41 0.04073 0.05675 0.07286 2.13% Castro::reset_internal_energy(Fab) 1008 0.04518 0.04673 0.04772 1.39% Castro::normalize_species() 62 0.04398 0.04452 0.046 1.34% FabArray::ParallelCopy_nowait() 41 0.03893 0.04147 0.04294 1.25% FillPatchIterator::Initialize 41 0.02947 0.03486 0.03711 1.08% StateData::FillBoundary(geom) 41 0.02833 0.03113 0.03419 1.00% Gravity::interpolate_monopole_grav() 21 0.02626 0.0273 0.02941 0.86% Castro::construct_new_gravity_source() 10 0.02331 0.02425 0.02569 0.75% Castro::initialize_do_advance() 10 0.01674 0.01808 0.01926 0.56% Castro::computeTemp() 63 0.01777 0.01805 0.01842 0.54% Castro::construct_old_gravity_source() 10 0.008881 0.01017 0.01563 0.46% FabArray::Saxpy() 20 0.0117 0.01282 0.01493 0.44% Castro::initialize_advance() 10 0.01041 0.01255 0.01473 0.43% FabArray::setDomainBndry() 41 0.008396 0.01079 0.01324 0.39% VisMF::Write(FabArray) 2 0.009173 0.009743 0.01221 0.36% MultiFab::contains_nan() 20 0.01015 0.01101 0.01149 0.34% Amr::writePlotFile() 2 0.007261 0.01002 0.01069 0.31% Castro::initMFs() 1 0.006552 0.007829 0.0103 0.30% StateData::define() 4 0.005498 0.006419 0.008561 0.25% Castro::construct_new_source() 50 0.006051 0.00627 0.006428 0.19% main() 1 0.003741 0.004207 0.004595 0.13% Gravity::get_new_grav_vector() 11 0.003309 0.003673 0.004063 0.12% Gravity::get_old_grav_vector() 10 0.001594 0.002206 0.002617 0.08% Amr::coarseTimeStep() 10 0.0008016 0.001572 0.002146 0.06% Castro::finalize_do_advance() 10 0.001329 0.001416 0.001523 0.04% AmrLevel::FillPatch() 41 0.001105 0.001186 0.001338 0.04% Amr::timeStep() 10 0.0001258 0.0001914 0.0004602 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002681 0.0002819 0.0002987 0.01% Castro::do_advance_ctu() 10 0.0001622 0.0001871 0.0002177 0.01% Castro::clean_state() 62 0.0001414 0.0001549 0.0001714 0.00% StateDataPhysBCFunct::() 41 0.0001103 0.0001266 0.0001508 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001056 0.0001142 0.0001269 0.00% FabArray::ParallelCopy() 41 8.453e-05 9.733e-05 0.0001218 0.00% Castro::construct_old_source() 50 6.191e-05 7.632e-05 0.0001045 0.00% Amr::FinalizeInit() 1 3.149e-06 1.741e-05 0.0001026 0.00% Castro::do_old_sources() 10 7.433e-05 8.952e-05 0.0001014 0.00% Castro::Castro() 1 5.398e-05 6.33e-05 8.017e-05 0.00% FillPatchSingleLevel 41 6.711e-05 7.183e-05 7.97e-05 0.00% Castro::do_new_sources() 10 5.448e-05 6.536e-05 7.321e-05 0.00% Amr::defBaseLevel() 1 3.94e-05 4.84e-05 6.168e-05 0.00% Castro::apply_source_to_state() 20 4.498e-05 5.272e-05 5.919e-05 0.00% Castro::subcycle_advance_ctu() 10 4.485e-05 5.001e-05 5.674e-05 0.00% Castro::advance() 10 3.899e-05 4.437e-05 5.46e-05 0.00% Castro::construct_old_gravity() 10 3.675e-05 4.332e-05 5.244e-05 0.00% Castro::construct_new_gravity() 10 2.711e-05 3.578e-05 4.26e-05 0.00% Castro::expand_state() 10 1.995e-05 2.609e-05 3.362e-05 0.00% Castro::check_for_nan() 20 2.376e-05 2.669e-05 3.137e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.025e-05 1.451e-05 2.699e-05 0.00% Castro::post_init() 1 1.593e-05 1.942e-05 2.508e-05 0.00% Castro::post_timestep() 10 1.311e-05 1.596e-05 1.843e-05 0.00% Castro::computeNewDt() 9 8.133e-06 1.002e-05 1.142e-05 0.00% Amr::InitializeInit() 1 2.576e-06 4.285e-06 1.012e-05 0.00% Castro::computeInitialDt() 2 5.544e-06 7.01e-06 8.611e-06 0.00% Amr::init() 1 2.077e-06 3.931e-06 5.884e-06 0.00% Amr::initialInit() 1 1.269e-06 3.088e-06 5.454e-06 0.00% Other 260 0.0108 0.01652 0.02 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.422 3.426 3.427 100.00% Amr::coarseTimeStep() 10 3.227 3.227 3.227 94.16% Amr::timeStep() 10 3.215 3.215 3.216 93.83% Castro::advance() 10 3.199 3.199 3.199 93.35% Castro::subcycle_advance_ctu() 10 3.119 3.122 3.126 91.20% Castro::do_advance_ctu() 10 3.119 3.122 3.126 91.20% Castro::construct_ctu_hydro_source() 10 2.374 2.377 2.382 69.49% Gravity::make_radial_gravity() 21 0.2993 0.3051 0.3106 9.06% AmrLevel::FillPatch() 41 0.1933 0.2102 0.2238 6.53% Gravity::get_new_grav_vector() 11 0.2028 0.2039 0.2048 5.98% Castro::construct_old_gravity() 10 0.1845 0.1893 0.1948 5.68% Gravity::get_old_grav_vector() 10 0.1837 0.1886 0.1941 5.66% Amr::init() 1 0.1826 0.1862 0.188 5.48% FillPatchIterator::Initialize 41 0.1625 0.1755 0.1878 5.48% Castro::construct_new_gravity() 10 0.1809 0.1816 0.1827 5.33% Castro::initialize_do_advance() 10 0.1603 0.1674 0.1733 5.06% Amr::initialInit() 1 0.1676 0.1712 0.173 5.05% Amr::InitializeInit() 1 0.05964 0.09548 0.141 4.11% Amr::defBaseLevel() 1 0.05964 0.09548 0.141 4.11% FillPatchIterator::FillFromLevel0() 41 0.1145 0.1299 0.1407 4.10% FillPatchSingleLevel 41 0.1144 0.1297 0.1406 4.10% check_for_negative_density() 10 0.01301 0.07756 0.1339 3.91% Castro::initData() 1 0.03774 0.07392 0.118 3.44% Castro::estTimeStep() 21 0.02692 0.07755 0.1174 3.43% Castro::clean_state() 62 0.1124 0.115 0.1172 3.42% Castro::expand_state() 10 0.1054 0.1119 0.1171 3.42% Amr::FinalizeInit() 1 0.02662 0.0757 0.1126 3.28% FabArray::ParallelCopy() 41 0.08313 0.09841 0.112 3.27% Castro::do_old_sources() 10 0.09385 0.1031 0.1098 3.20% amrex::Copy() 193 0.08045 0.08767 0.1003 2.93% Castro::computeInitialDt() 2 0.002338 0.05149 0.08842 2.58% FabArray::setVal() 143 0.06633 0.07174 0.07879 2.30% Castro::initialize_advance() 10 0.06984 0.07394 0.0768 2.24% FabArray::ParallelCopy_finish() 41 0.04073 0.05675 0.07286 2.13% Castro::do_new_sources() 10 0.06139 0.06447 0.06813 1.99% Castro::computeTemp() 63 0.06322 0.06506 0.06611 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04545 0.04701 0.04801 1.40% Castro::reset_internal_energy(Fab) 1008 0.04518 0.04673 0.04772 1.39% Castro::normalize_species() 62 0.04398 0.04452 0.046 1.34% FabArray::ParallelCopy_nowait() 41 0.03903 0.04157 0.04303 1.26% StateDataPhysBCFunct::() 41 0.02847 0.03125 0.03431 1.00% StateData::FillBoundary(geom) 41 0.02833 0.03113 0.03419 1.00% Castro::construct_new_source() 50 0.02936 0.03052 0.03205 0.94% Gravity::interpolate_monopole_grav() 21 0.02626 0.0273 0.02941 0.86% Castro::construct_new_gravity_source() 10 0.02331 0.02425 0.02569 0.75% Castro::post_init() 1 0.0237 0.02379 0.0239 0.70% Amr::writePlotFile() 2 0.02268 0.02277 0.02284 0.67% Castro::finalize_do_advance() 10 0.01419 0.01812 0.02216 0.65% Castro::post_timestep() 10 0.0152 0.01583 0.0169 0.49% Castro::construct_old_source() 50 0.008943 0.01024 0.01574 0.46% Castro::construct_old_gravity_source() 10 0.008881 0.01017 0.01563 0.46% Castro::apply_source_to_state() 20 0.01175 0.01287 0.01498 0.44% FabArray::Saxpy() 20 0.0117 0.01282 0.01493 0.44% Castro::Castro() 1 0.009807 0.0114 0.01427 0.42% FabArray::setDomainBndry() 41 0.008396 0.01079 0.01324 0.39% VisMF::Write(FabArray) 2 0.009173 0.009743 0.01221 0.36% Castro::check_for_nan() 20 0.01018 0.01104 0.01152 0.34% MultiFab::contains_nan() 20 0.01015 0.01101 0.01149 0.34% Castro::initMFs() 1 0.006552 0.007829 0.0103 0.30% Castro::computeNewDt() 9 0.009336 0.009369 0.009422 0.27% AmrLevel::AmrLevel(dm) 1 0.005508 0.006434 0.008588 0.25% StateData::define() 4 0.005498 0.006419 0.008561 0.25% Other 260 0.01553 0.02516 0.03073 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 36 B 52 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8644 KiB 8659 KiB 8662 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6735 KiB 6746 KiB 6754 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7120 KiB 7133 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4546 KiB 4551 KiB 4558 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 210 KiB 226 KiB 241 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2795 KiB 2800 KiB 2804 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 222 KiB 226 KiB 231 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 42 KiB 46 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2023 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 76 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 70 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.11-40-g510212089b59) finalized