Initializing AMReX (25.11-46-gce6502b2c0cb)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.11-46-gce6502b2c0cb) initialized Starting run at 06:17:47 UTC on 2025-11-21. Successfully read inputs file ... Castro git describe: 25.11-7-gc9f724d8e AMReX git describe: 25.11-46-gce6502b2c Microphysics git describe: 25.11-7-gb1a752a3 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014642153 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.345784201 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.354530029 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.330127402 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.327315958 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.379117013 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.313600985 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.302340274 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.303586362 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.328476048 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.305119417 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007582177 seconds Ending run at 06:17:51 UTC on 2025-11-21. Run time = 3.468250765 Run time without initialization = 3.302598057 Average number of zones advanced per microsecond: 0.794 Average number of zones advanced per microsecond per rank: 0.099 TinyProfiler total time across processes [min...avg...max]: 3.4665 ... 3.4677 ... 3.4685 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2237 2.2902 2.3596 68.03% Gravity::make_radial_gravity() 21 0.2893 0.2958 0.3076 8.87% check_for_negative_density() 10 0.04593 0.1175 0.181 5.22% amrex::Copy() 193 0.0831 0.08911 0.1003 2.89% Castro::estTimeStep() 21 0.02712 0.06182 0.1001 2.88% Castro::initData() 1 0.03392 0.06867 0.09958 2.87% FabArray::setVal() 143 0.06709 0.07085 0.07717 2.22% FabArray::ParallelCopy_finish() 41 0.03694 0.05685 0.07207 2.08% Castro::reset_internal_energy(Fab) 1008 0.04577 0.04732 0.04889 1.41% Castro::normalize_species() 62 0.04483 0.04598 0.04721 1.36% FabArray::ParallelCopy_nowait() 41 0.03942 0.0419 0.04321 1.25% FillPatchIterator::Initialize 41 0.02998 0.03517 0.03717 1.07% StateData::FillBoundary(geom) 41 0.02742 0.03141 0.03387 0.98% Gravity::interpolate_monopole_grav() 21 0.02704 0.02783 0.02967 0.86% Castro::construct_new_gravity_source() 10 0.02275 0.02445 0.02686 0.77% Castro::computeTemp() 63 0.01796 0.01839 0.01918 0.55% Castro::initialize_do_advance() 10 0.01696 0.01815 0.01862 0.54% Castro::initialize_advance() 10 0.01063 0.01253 0.01499 0.43% FabArray::setDomainBndry() 41 0.008521 0.01196 0.01417 0.41% FabArray::Saxpy() 20 0.01176 0.01295 0.01382 0.40% VisMF::Write(FabArray) 2 0.009227 0.009721 0.01215 0.35% MultiFab::contains_nan() 20 0.009605 0.01059 0.01198 0.35% Amr::writePlotFile() 2 0.007123 0.009818 0.01042 0.30% Castro::construct_old_gravity_source() 10 0.009567 0.009776 0.01004 0.29% Castro::initMFs() 1 0.006458 0.00702 0.007906 0.23% Castro::construct_new_source() 50 0.00612 0.006334 0.00661 0.19% main() 1 0.003381 0.004212 0.004532 0.13% Gravity::get_new_grav_vector() 11 0.003217 0.003593 0.003849 0.11% Gravity::get_old_grav_vector() 10 0.001597 0.002218 0.00278 0.08% Amr::coarseTimeStep() 10 0.001237 0.001795 0.002419 0.07% Castro::finalize_do_advance() 10 0.001296 0.001337 0.001398 0.04% AmrLevel::FillPatch() 41 0.001064 0.001113 0.00118 0.03% Amr::timeStep() 10 0.000134 0.0001768 0.0003643 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002606 0.0002751 0.0002918 0.01% Castro::do_advance_ctu() 10 0.0001685 0.0001843 0.0002021 0.01% Castro::clean_state() 62 0.0001411 0.0001532 0.0001649 0.00% StateDataPhysBCFunct::() 41 0.0001075 0.0001208 0.0001322 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001094 0.0001127 0.0001239 0.00% Amr::FinalizeInit() 1 3.793e-06 1.822e-05 0.0001157 0.00% Castro::do_old_sources() 10 8.142e-05 9.21e-05 0.0001093 0.00% FabArray::ParallelCopy() 41 8.782e-05 9.105e-05 9.463e-05 0.00% Castro::construct_old_source() 50 6.477e-05 7.186e-05 9.38e-05 0.00% Castro::Castro() 1 5.524e-05 7.016e-05 8.816e-05 0.00% FillPatchSingleLevel 41 6.608e-05 7.295e-05 8.341e-05 0.00% Castro::apply_source_to_state() 20 5.07e-05 5.81e-05 7.313e-05 0.00% Castro::do_new_sources() 10 5.443e-05 6.209e-05 6.797e-05 0.00% Castro::construct_old_gravity() 10 3.358e-05 4.11e-05 6.615e-05 0.00% Castro::subcycle_advance_ctu() 10 4.503e-05 5.171e-05 5.846e-05 0.00% Amr::defBaseLevel() 1 3.712e-05 4.525e-05 5.348e-05 0.00% Castro::advance() 10 4.184e-05 4.527e-05 5.02e-05 0.00% Castro::construct_new_gravity() 10 2.53e-05 3.374e-05 4.557e-05 0.00% Castro::expand_state() 10 2.352e-05 2.65e-05 3.718e-05 0.00% Castro::check_for_nan() 20 2.266e-05 2.582e-05 2.839e-05 0.00% Castro::post_init() 1 1.382e-05 1.693e-05 2.324e-05 0.00% Castro::post_timestep() 10 1.464e-05 1.56e-05 1.711e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.954e-06 1.232e-05 1.547e-05 0.00% Castro::computeNewDt() 9 8.47e-06 9.33e-06 1.168e-05 0.00% Amr::InitializeInit() 1 2.566e-06 4.145e-06 1.021e-05 0.00% Amr::init() 1 2.303e-06 5.457e-06 8.973e-06 0.00% Castro::computeInitialDt() 2 5.472e-06 6.609e-06 8.252e-06 0.00% Amr::initialInit() 1 1.56e-06 1.868e-06 2.163e-06 0.00% Other 264 0.01625 0.01932 0.02173 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.466 3.468 3.468 100.00% Amr::coarseTimeStep() 10 3.291 3.291 3.291 94.87% Amr::timeStep() 10 3.277 3.278 3.278 94.52% Castro::advance() 10 3.261 3.262 3.262 94.04% Castro::subcycle_advance_ctu() 10 3.181 3.185 3.187 91.88% Castro::do_advance_ctu() 10 3.181 3.185 3.187 91.87% Castro::construct_ctu_hydro_source() 10 2.426 2.429 2.432 70.11% Gravity::make_radial_gravity() 21 0.3068 0.3138 0.3228 9.31% AmrLevel::FillPatch() 41 0.1987 0.214 0.2233 6.44% Gravity::get_new_grav_vector() 11 0.2103 0.2116 0.213 6.14% Castro::construct_old_gravity() 10 0.1872 0.1912 0.1996 5.75% Gravity::get_old_grav_vector() 10 0.1863 0.1905 0.1988 5.73% Castro::construct_new_gravity() 10 0.1868 0.1874 0.1882 5.43% FillPatchIterator::Initialize 41 0.1614 0.1778 0.186 5.36% check_for_negative_density() 10 0.04593 0.1175 0.181 5.22% Castro::initialize_do_advance() 10 0.1623 0.1687 0.1719 4.96% Amr::init() 1 0.1643 0.1651 0.1656 4.77% Amr::initialInit() 1 0.1495 0.1502 0.1508 4.35% FillPatchIterator::FillFromLevel0() 41 0.1131 0.1307 0.14 4.04% FillPatchSingleLevel 41 0.113 0.1305 0.1399 4.03% Amr::InitializeInit() 1 0.05479 0.08998 0.1214 3.50% Amr::defBaseLevel() 1 0.05479 0.08997 0.1214 3.50% Castro::clean_state() 62 0.1141 0.1174 0.1205 3.47% Castro::expand_state() 10 0.1064 0.113 0.1171 3.38% FabArray::ParallelCopy() 41 0.08031 0.09893 0.1117 3.22% Castro::do_old_sources() 10 0.09626 0.1046 0.1096 3.16% Castro::initData() 1 0.03765 0.07243 0.1035 2.98% amrex::Copy() 193 0.0831 0.08911 0.1003 2.89% Castro::estTimeStep() 21 0.02712 0.06182 0.1001 2.88% Amr::FinalizeInit() 1 0.02829 0.06023 0.09507 2.74% Castro::initialize_advance() 10 0.0715 0.07351 0.07719 2.23% FabArray::setVal() 143 0.06709 0.07085 0.07717 2.22% FabArray::ParallelCopy_finish() 41 0.03694 0.05685 0.07207 2.08% Castro::do_new_sources() 10 0.06186 0.06535 0.07088 2.04% Castro::computeInitialDt() 2 0.002331 0.03424 0.06903 1.99% Castro::computeTemp() 63 0.06412 0.06599 0.06789 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04604 0.0476 0.04918 1.42% Castro::reset_internal_energy(Fab) 1008 0.04577 0.04732 0.04889 1.41% Castro::normalize_species() 62 0.04483 0.04598 0.04721 1.36% FabArray::ParallelCopy_nowait() 41 0.03953 0.04199 0.04329 1.25% StateDataPhysBCFunct::() 41 0.02752 0.03154 0.034 0.98% StateData::FillBoundary(geom) 41 0.02742 0.03141 0.03387 0.98% Castro::construct_new_source() 50 0.02888 0.03079 0.03347 0.97% Gravity::interpolate_monopole_grav() 21 0.02704 0.02783 0.02967 0.86% Castro::construct_new_gravity_source() 10 0.02275 0.02445 0.02686 0.77% Castro::post_init() 1 0.02527 0.02553 0.02566 0.74% Castro::finalize_do_advance() 10 0.01327 0.01919 0.0234 0.67% Amr::writePlotFile() 2 0.02247 0.02252 0.02257 0.65% Castro::post_timestep() 10 0.01563 0.01607 0.01644 0.47% FabArray::setDomainBndry() 41 0.008521 0.01196 0.01417 0.41% Castro::apply_source_to_state() 20 0.01181 0.01301 0.01387 0.40% FabArray::Saxpy() 20 0.01176 0.01295 0.01382 0.40% VisMF::Write(FabArray) 2 0.009227 0.009721 0.01215 0.35% Castro::check_for_nan() 20 0.009632 0.01062 0.01201 0.35% MultiFab::contains_nan() 20 0.009605 0.01059 0.01198 0.35% Castro::Castro() 1 0.009875 0.01068 0.01149 0.33% Castro::construct_old_source() 50 0.009661 0.009848 0.0101 0.29% Castro::construct_old_gravity_source() 10 0.009567 0.009776 0.01004 0.29% Castro::computeNewDt() 9 0.009741 0.009747 0.009751 0.28% Castro::initMFs() 1 0.006458 0.00702 0.007906 0.23% AmrLevel::AmrLevel(dm) 1 0.005506 0.006045 0.00666 0.19% Other 264 0.02097 0.02508 0.02841 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 33 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8669 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6790 KiB 6795 KiB 6797 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4583 KiB 4587 KiB 4591 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 216 KiB 227 KiB 237 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2818 KiB 2820 KiB 2821 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 225 KiB 230 KiB 237 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 35 KiB 41 KiB 46 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 78 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 70 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.11-46-gce6502b2c0cb) finalized