Initializing AMReX (25.11-47-gc4fcda1fb2ea)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.11-47-gc4fcda1fb2ea) initialized Starting run at 06:20:31 UTC on 2025-11-24. Successfully read inputs file ... Castro git describe: 25.11-7-gc9f724d8e AMReX git describe: 25.11-47-gc4fcda1fb Microphysics git describe: 25.11-11-gb3da1a32 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014703457 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.358076688 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.35322427 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.341562513 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.32395083 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.388629477 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.307420741 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.299217685 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299630966 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.300744768 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.300479837 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007560711 seconds Ending run at 06:20:34 UTC on 2025-11-24. Run time = 3.447374717 Run time without initialization = 3.285477784 Average number of zones advanced per microsecond: 0.798 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.4461 ... 3.4468 ... 3.4474 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2124 2.2767 2.3425 67.95% Gravity::make_radial_gravity() 21 0.2886 0.2945 0.3149 9.13% check_for_negative_density() 10 0.05905 0.1368 0.2053 5.96% Castro::initData() 1 0.03497 0.06869 0.0995 2.89% Castro::estTimeStep() 21 0.02558 0.06029 0.09623 2.79% FabArray::ParallelCopy_finish() 41 0.05116 0.06361 0.0905 2.63% amrex::Copy() 193 0.06498 0.0793 0.08837 2.56% FabArray::setVal() 143 0.05123 0.06685 0.07538 2.19% Castro::reset_internal_energy(Fab) 1008 0.04454 0.04652 0.04852 1.41% Castro::normalize_species() 62 0.04393 0.04505 0.04725 1.37% FabArray::ParallelCopy_nowait() 41 0.03596 0.03974 0.04118 1.19% FillPatchIterator::Initialize 41 0.02839 0.03198 0.03484 1.01% StateData::FillBoundary(geom) 41 0.02669 0.03106 0.03403 0.99% Gravity::interpolate_monopole_grav() 21 0.02649 0.02676 0.02697 0.78% Castro::construct_new_gravity_source() 10 0.02255 0.02358 0.02505 0.73% Castro::initialize_do_advance() 10 0.01135 0.01661 0.02274 0.66% Castro::computeTemp() 63 0.01756 0.01797 0.01848 0.54% FabArray::Saxpy() 20 0.01132 0.01281 0.01801 0.52% MultiFab::contains_nan() 20 0.009967 0.01136 0.014 0.41% Castro::initialize_advance() 10 0.005308 0.01064 0.01346 0.39% VisMF::Write(FabArray) 2 0.009308 0.009935 0.0133 0.39% FabArray::setDomainBndry() 41 0.007598 0.01037 0.01223 0.35% Amr::writePlotFile() 2 0.007185 0.009569 0.01012 0.29% Castro::construct_old_gravity_source() 10 0.006542 0.008593 0.009217 0.27% Castro::initMFs() 1 0.006639 0.007028 0.008384 0.24% Castro::construct_new_source() 50 0.005519 0.005991 0.006228 0.18% main() 1 0.003957 0.004205 0.00456 0.13% Gravity::get_new_grav_vector() 11 0.002837 0.003329 0.003543 0.10% Amr::coarseTimeStep() 10 0.0004868 0.002314 0.003176 0.09% Gravity::get_old_grav_vector() 10 0.001418 0.001939 0.002244 0.07% Castro::finalize_do_advance() 10 0.0005731 0.001088 0.001663 0.05% AmrLevel::FillPatch() 41 0.0007778 0.001136 0.001247 0.04% Amr::timeStep() 10 0.0001372 0.0001721 0.0003593 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002595 0.0002747 0.0002905 0.01% Castro::do_advance_ctu() 10 0.0001615 0.0001771 0.000217 0.01% StateDataPhysBCFunct::() 41 0.000102 0.0001392 0.0001783 0.01% Castro::clean_state() 62 0.0001386 0.0001521 0.0001769 0.01% Castro::Castro() 1 5.878e-05 9.509e-05 0.0001197 0.00% FillPatchIterator::FillFromLevel0() 41 9.941e-05 0.0001047 0.0001108 0.00% FabArray::ParallelCopy() 41 8.508e-05 9.446e-05 0.0001035 0.00% Castro::do_old_sources() 10 6.799e-05 8.383e-05 0.0001003 0.00% Amr::FinalizeInit() 1 3.063e-06 1.435e-05 8.653e-05 0.00% FillPatchSingleLevel 41 6.459e-05 6.948e-05 7.777e-05 0.00% Castro::construct_old_source() 50 4.423e-05 6.101e-05 7.769e-05 0.00% Castro::do_new_sources() 10 5.234e-05 5.969e-05 6.727e-05 0.00% Castro::subcycle_advance_ctu() 10 4.041e-05 4.936e-05 5.998e-05 0.00% Amr::defBaseLevel() 1 3.642e-05 4.485e-05 5.812e-05 0.00% Castro::apply_source_to_state() 20 4.471e-05 4.862e-05 5.595e-05 0.00% Castro::advance() 10 3.249e-05 4.298e-05 5.058e-05 0.00% Castro::construct_old_gravity() 10 3.299e-05 4.184e-05 5.006e-05 0.00% Castro::construct_new_gravity() 10 2.869e-05 3.43e-05 4.052e-05 0.00% Castro::expand_state() 10 1.845e-05 2.4e-05 3.746e-05 0.00% Castro::check_for_nan() 20 2.304e-05 2.511e-05 2.787e-05 0.00% Castro::post_init() 1 1.43e-05 1.582e-05 1.813e-05 0.00% Castro::post_timestep() 10 1.391e-05 1.527e-05 1.658e-05 0.00% Castro::computeNewDt() 9 8.603e-06 9.64e-06 1.088e-05 0.00% Amr::InitializeInit() 1 2.454e-06 4.082e-06 9.759e-06 0.00% Castro::computeInitialDt() 2 5.393e-06 6.599e-06 7.875e-06 0.00% Amr::initialInit() 1 1.502e-06 4.576e-06 6.623e-06 0.00% Amr::init() 1 1.63e-06 2.236e-06 2.763e-06 0.00% Other 265 0.01498 0.01873 0.02112 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.446 3.447 3.447 100.00% Amr::coarseTimeStep() 10 3.273 3.273 3.273 94.95% Amr::timeStep() 10 3.26 3.261 3.262 94.63% Castro::advance() 10 3.244 3.245 3.245 94.13% Castro::subcycle_advance_ctu() 10 3.169 3.173 3.189 92.52% Castro::do_advance_ctu() 10 3.169 3.173 3.189 92.52% Castro::construct_ctu_hydro_source() 10 2.423 2.435 2.441 70.80% Gravity::make_radial_gravity() 21 0.3045 0.3102 0.3282 9.52% AmrLevel::FillPatch() 41 0.2001 0.2108 0.2205 6.40% Gravity::get_new_grav_vector() 11 0.2032 0.2047 0.2058 5.97% check_for_negative_density() 10 0.05905 0.1368 0.2053 5.96% Castro::construct_old_gravity() 10 0.1831 0.1876 0.2036 5.91% Gravity::get_old_grav_vector() 10 0.1821 0.1868 0.203 5.89% FillPatchIterator::Initialize 41 0.1645 0.1772 0.1896 5.50% Castro::construct_new_gravity() 10 0.181 0.1827 0.1841 5.34% Castro::initialize_do_advance() 10 0.1674 0.1706 0.1734 5.03% Amr::init() 1 0.1605 0.1613 0.1617 4.69% FillPatchIterator::FillFromLevel0() 41 0.1253 0.1349 0.1536 4.46% FillPatchSingleLevel 41 0.1252 0.1348 0.1535 4.45% Amr::initialInit() 1 0.1458 0.1469 0.1473 4.27% FabArray::ParallelCopy() 41 0.0925 0.1035 0.1267 3.67% Castro::expand_state() 10 0.1123 0.1169 0.124 3.60% Amr::InitializeInit() 1 0.05684 0.0905 0.1212 3.52% Amr::defBaseLevel() 1 0.05684 0.09049 0.1212 3.52% Castro::clean_state() 62 0.1115 0.115 0.1178 3.42% Castro::do_old_sources() 10 0.09752 0.1008 0.1091 3.16% Castro::initData() 1 0.03869 0.07258 0.1036 3.01% Castro::estTimeStep() 21 0.02558 0.06029 0.09623 2.79% FabArray::ParallelCopy_finish() 41 0.05116 0.06361 0.0905 2.63% Amr::FinalizeInit() 1 0.02589 0.05635 0.09043 2.62% amrex::Copy() 193 0.06498 0.0793 0.08837 2.56% FabArray::setVal() 143 0.05123 0.06685 0.07538 2.19% Castro::initialize_advance() 10 0.05134 0.06805 0.07232 2.10% Castro::computeTemp() 63 0.06237 0.06476 0.06728 1.95% Castro::computeInitialDt() 2 0.002268 0.03283 0.06683 1.94% Castro::do_new_sources() 10 0.05817 0.06212 0.06678 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04481 0.0468 0.04879 1.42% Castro::reset_internal_energy(Fab) 1008 0.04454 0.04652 0.04852 1.41% Castro::normalize_species() 62 0.04393 0.04505 0.04725 1.37% FabArray::ParallelCopy_nowait() 41 0.03606 0.03983 0.04126 1.20% StateDataPhysBCFunct::() 41 0.02679 0.0312 0.0342 0.99% StateData::FillBoundary(geom) 41 0.02669 0.03106 0.03403 0.99% Castro::construct_new_source() 50 0.0285 0.02957 0.03128 0.91% Gravity::interpolate_monopole_grav() 21 0.02649 0.02676 0.02697 0.78% Castro::construct_new_gravity_source() 10 0.02255 0.02358 0.02505 0.73% Castro::finalize_do_advance() 10 0.01312 0.01917 0.02348 0.68% Castro::post_init() 1 0.0228 0.0231 0.02322 0.67% Amr::writePlotFile() 2 0.02199 0.0221 0.02251 0.65% Castro::apply_source_to_state() 20 0.01137 0.01286 0.01806 0.52% FabArray::Saxpy() 20 0.01132 0.01281 0.01801 0.52% Castro::post_timestep() 10 0.01511 0.01582 0.01704 0.49% Castro::check_for_nan() 20 0.009995 0.01138 0.01403 0.41% MultiFab::contains_nan() 20 0.009967 0.01136 0.014 0.41% VisMF::Write(FabArray) 2 0.009308 0.009935 0.0133 0.39% FabArray::setDomainBndry() 41 0.007598 0.01037 0.01223 0.35% Castro::Castro() 1 0.01088 0.01129 0.01207 0.35% Castro::computeNewDt() 9 0.009387 0.009395 0.009409 0.27% Castro::construct_old_source() 50 0.006587 0.008654 0.009294 0.27% Castro::construct_old_gravity_source() 10 0.006542 0.008593 0.009217 0.27% Castro::initMFs() 1 0.006639 0.007028 0.008384 0.24% Other 265 0.02499 0.03005 0.03367 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 33 B 40 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8670 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6799 KiB 6801 KiB 6803 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7140 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4593 KiB 4599 KiB 4619 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 220 KiB 231 KiB 238 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2820 KiB 2823 KiB 2824 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 225 KiB 229 KiB 242 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 40 KiB 46 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 76 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 69 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.11-47-gc4fcda1fb2ea) finalized