Initializing AMReX (25.11-47-gc4fcda1fb2ea)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.11-47-gc4fcda1fb2ea) initialized Starting run at 06:17:26 UTC on 2025-11-25. Successfully read inputs file ... Castro git describe: 25.11-8-g389379f86 AMReX git describe: 25.11-47-gc4fcda1fb Microphysics git describe: 25.11-12-gfbb310ae reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014678799 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.340201132 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.341876202 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.329511788 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.316036342 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.35362322 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306235978 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.299837928 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.301078862 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.300809962 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.301551144 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007616262 seconds Ending run at 06:17:30 UTC on 2025-11-25. Run time = 3.388669771 Run time without initialization = 3.203211011 Average number of zones advanced per microsecond: 0.818 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3856 ... 3.3870 ... 3.3888 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2141 2.2540 2.3145 68.30% Gravity::make_radial_gravity() 21 0.2732 0.2854 0.2956 8.72% check_for_negative_density() 10 0.03428 0.09814 0.1393 4.11% Castro::estTimeStep() 21 0.0383 0.0819 0.121 3.57% Castro::initData() 1 0.03384 0.07149 0.1192 3.52% FabArray::ParallelCopy_finish() 41 0.03594 0.06667 0.1118 3.30% amrex::Copy() 193 0.05395 0.0775 0.09766 2.88% FabArray::setVal() 143 0.03918 0.05921 0.06995 2.06% Castro::normalize_species() 62 0.04368 0.0468 0.06271 1.85% Castro::reset_internal_energy(Fab) 1008 0.04414 0.0462 0.04748 1.40% FabArray::ParallelCopy_nowait() 41 0.02988 0.03801 0.04109 1.21% FillPatchIterator::Initialize 41 0.02598 0.03193 0.0361 1.07% StateData::FillBoundary(geom) 41 0.02785 0.03042 0.03519 1.04% Gravity::interpolate_monopole_grav() 21 0.02599 0.02633 0.02661 0.79% Castro::construct_new_gravity_source() 10 0.01925 0.0219 0.02408 0.71% Castro::computeTemp() 63 0.01731 0.01798 0.01859 0.55% Castro::initialize_do_advance() 10 0.01198 0.01533 0.01712 0.51% Amr::writePlotFile() 2 0.007417 0.01112 0.0139 0.41% FabArray::setDomainBndry() 41 0.008039 0.01103 0.01296 0.38% VisMF::Write(FabArray) 2 0.008811 0.009736 0.01224 0.36% FabArray::Saxpy() 20 0.007943 0.01075 0.01201 0.35% Castro::initialize_advance() 10 0.005456 0.008802 0.01191 0.35% MultiFab::contains_nan() 20 0.00889 0.01021 0.01125 0.33% Castro::construct_old_gravity_source() 10 0.005319 0.007807 0.008548 0.25% Castro::initMFs() 1 0.006605 0.007101 0.008229 0.24% Castro::construct_new_source() 50 0.005123 0.005591 0.005925 0.17% Amr::coarseTimeStep() 10 0.001782 0.003653 0.004568 0.13% main() 1 0.003619 0.004071 0.004376 0.13% Gravity::get_new_grav_vector() 11 0.002791 0.003319 0.003673 0.11% Gravity::get_old_grav_vector() 10 0.001679 0.00199 0.002303 0.07% Castro::finalize_do_advance() 10 0.000534 0.0009831 0.001156 0.03% AmrLevel::FillPatch() 41 0.0007294 0.0009244 0.001111 0.03% Amr::timeStep() 10 0.0001322 0.0001859 0.00043 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002572 0.0002717 0.0002956 0.01% Castro::do_advance_ctu() 10 0.0001522 0.0001867 0.0002503 0.01% Castro::clean_state() 62 0.0001319 0.0001451 0.0001573 0.00% FillPatchIterator::FillFromLevel0() 41 9.641e-05 0.0001062 0.0001281 0.00% StateDataPhysBCFunct::() 41 9.234e-05 0.0001152 0.0001241 0.00% FabArray::ParallelCopy() 41 7.632e-05 8.807e-05 0.0001013 0.00% Castro::do_old_sources() 10 7.215e-05 8.499e-05 9.917e-05 0.00% Castro::Castro() 1 5.068e-05 6.469e-05 8.009e-05 0.00% Castro::construct_old_source() 50 5.249e-05 6.374e-05 7.936e-05 0.00% FillPatchSingleLevel 41 6.448e-05 7.033e-05 7.372e-05 0.00% Amr::FinalizeInit() 1 3.145e-06 1.211e-05 7.028e-05 0.00% Castro::do_new_sources() 10 5.159e-05 5.59e-05 6.005e-05 0.00% Castro::apply_source_to_state() 20 3.348e-05 4.618e-05 5.224e-05 0.00% Amr::defBaseLevel() 1 3.404e-05 4.049e-05 5.107e-05 0.00% Castro::subcycle_advance_ctu() 10 3.899e-05 4.466e-05 4.914e-05 0.00% Castro::construct_old_gravity() 10 3.167e-05 3.887e-05 4.86e-05 0.00% Castro::advance() 10 3.619e-05 3.979e-05 4.655e-05 0.00% Castro::construct_new_gravity() 10 2.93e-05 3.438e-05 3.964e-05 0.00% Castro::check_for_nan() 20 2.291e-05 2.511e-05 2.724e-05 0.00% Castro::expand_state() 10 1.91e-05 2.231e-05 2.485e-05 0.00% Castro::post_init() 1 1.329e-05 1.485e-05 1.82e-05 0.00% Castro::post_timestep() 10 1.213e-05 1.518e-05 1.632e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.083e-06 1.128e-05 1.474e-05 0.00% Castro::computeNewDt() 9 8.83e-06 9.388e-06 9.895e-06 0.00% Amr::InitializeInit() 1 2.565e-06 3.706e-06 9.493e-06 0.00% Castro::computeInitialDt() 2 4.546e-06 6.017e-06 7.895e-06 0.00% Amr::init() 1 1.858e-06 4.071e-06 5.575e-06 0.00% Amr::initialInit() 1 1.355e-06 2.432e-06 4.982e-06 0.00% Other 264 0.01552 0.01892 0.02208 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.386 3.387 3.389 100.00% Amr::coarseTimeStep() 10 3.191 3.191 3.191 94.17% Amr::timeStep() 10 3.176 3.176 3.178 93.79% Castro::advance() 10 3.159 3.16 3.161 93.27% Castro::subcycle_advance_ctu() 10 3.089 3.095 3.107 91.68% Castro::do_advance_ctu() 10 3.089 3.095 3.107 91.68% Castro::construct_ctu_hydro_source() 10 2.369 2.373 2.379 70.20% Gravity::make_radial_gravity() 21 0.2894 0.3008 0.3072 9.06% AmrLevel::FillPatch() 41 0.1841 0.2081 0.2301 6.79% FillPatchIterator::Initialize 41 0.1541 0.1785 0.2056 6.07% Gravity::get_new_grav_vector() 11 0.1939 0.1987 0.2003 5.91% Castro::construct_old_gravity() 10 0.1816 0.1907 0.198 5.84% Gravity::get_old_grav_vector() 10 0.1809 0.19 0.1975 5.83% Amr::init() 1 0.1823 0.1837 0.1849 5.46% Castro::construct_new_gravity() 10 0.1721 0.1759 0.1771 5.23% FillPatchIterator::FillFromLevel0() 41 0.1127 0.1356 0.1705 5.03% FillPatchSingleLevel 41 0.1126 0.1355 0.1705 5.03% Amr::initialInit() 1 0.166 0.168 0.1704 5.03% Castro::initialize_do_advance() 10 0.1528 0.1598 0.1639 4.84% FabArray::ParallelCopy() 41 0.07721 0.1049 0.1419 4.19% Amr::InitializeInit() 1 0.05408 0.09322 0.14 4.13% Amr::defBaseLevel() 1 0.05408 0.09322 0.14 4.13% check_for_negative_density() 10 0.03428 0.09814 0.1393 4.11% Castro::clean_state() 62 0.1111 0.1163 0.1331 3.93% Castro::initData() 1 0.03763 0.07534 0.1237 3.65% Castro::estTimeStep() 21 0.0383 0.0819 0.121 3.57% Castro::expand_state() 10 0.1005 0.1083 0.1162 3.43% Amr::FinalizeInit() 1 0.026 0.0748 0.1127 3.33% FabArray::ParallelCopy_finish() 41 0.03594 0.06667 0.1118 3.30% Castro::do_old_sources() 10 0.09094 0.0984 0.1055 3.11% amrex::Copy() 193 0.05395 0.0775 0.09766 2.88% Castro::computeInitialDt() 2 0.002755 0.05058 0.08853 2.61% FabArray::setVal() 143 0.03918 0.05921 0.06995 2.06% Castro::initialize_advance() 10 0.04986 0.06173 0.06805 2.01% Castro::computeTemp() 63 0.06171 0.06445 0.06636 1.96% Castro::do_new_sources() 10 0.05514 0.05857 0.06518 1.92% Castro::normalize_species() 62 0.04368 0.0468 0.06271 1.85% Castro::reset_internal_energy(MultiFab) 63 0.0444 0.04647 0.04777 1.41% Castro::reset_internal_energy(Fab) 1008 0.04414 0.0462 0.04748 1.40% FabArray::ParallelCopy_nowait() 41 0.02998 0.03811 0.04119 1.22% StateDataPhysBCFunct::() 41 0.02797 0.03053 0.0353 1.04% StateData::FillBoundary(geom) 41 0.02785 0.03042 0.03519 1.04% Castro::construct_new_source() 50 0.02438 0.02749 0.03 0.89% Gravity::interpolate_monopole_grav() 21 0.02599 0.02633 0.02661 0.79% Castro::finalize_do_advance() 10 0.015 0.02247 0.02628 0.78% Castro::post_init() 1 0.02256 0.02392 0.02508 0.74% Amr::writePlotFile() 2 0.02223 0.02334 0.02441 0.72% Castro::construct_new_gravity_source() 10 0.01925 0.0219 0.02408 0.71% Castro::post_timestep() 10 0.01534 0.01621 0.01925 0.57% FabArray::setDomainBndry() 41 0.008039 0.01103 0.01296 0.38% VisMF::Write(FabArray) 2 0.008811 0.009736 0.01224 0.36% Castro::apply_source_to_state() 20 0.007977 0.01079 0.01206 0.36% FabArray::Saxpy() 20 0.007943 0.01075 0.01201 0.35% Castro::Castro() 1 0.009962 0.01063 0.01154 0.34% Castro::check_for_nan() 20 0.008913 0.01023 0.01127 0.33% MultiFab::contains_nan() 20 0.00889 0.01021 0.01125 0.33% Castro::computeNewDt() 9 0.009821 0.009843 0.009862 0.29% Castro::construct_old_source() 50 0.005373 0.00787 0.008615 0.25% Castro::construct_old_gravity_source() 10 0.005319 0.007807 0.008548 0.25% Castro::initMFs() 1 0.006605 0.007101 0.008229 0.24% AmrLevel::AmrLevel(dm) 1 0.005479 0.005855 0.006402 0.19% Other 264 0.01924 0.0249 0.03005 0.89% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 36 B 45 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8656 KiB 8668 KiB 8675 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6740 KiB 6749 KiB 6753 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7129 KiB 7139 KiB 7144 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4556 KiB 4566 KiB 4585 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 201 KiB 225 KiB 248 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2794 KiB 2798 KiB 2800 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 217 KiB 226 KiB 231 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 34 KiB 44 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 73 KiB 75 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 68 KiB 72 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.11-47-gc4fcda1fb2ea) finalized