Initializing AMReX (25.11-47-gc4fcda1fb2ea)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.11-47-gc4fcda1fb2ea) initialized Starting run at 06:17:32 UTC on 2025-11-26. Successfully read inputs file ... Castro git describe: 25.11-8-g389379f86 AMReX git describe: 25.11-47-gc4fcda1fb Microphysics git describe: 25.11-12-gfbb310ae reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01593303 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.356681616 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.340250868 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.321025923 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.317012608 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.385841792 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.311605109 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.300167989 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.301475078 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.300694852 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.302802193 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007811359 seconds Ending run at 06:17:36 UTC on 2025-11-26. Run time = 3.440719328 Run time without initialization = 3.250424558 Average number of zones advanced per microsecond: 0.806 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4388 ... 3.4403 ... 3.4411 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1940 2.2700 2.3122 67.19% Gravity::make_radial_gravity() 21 0.2937 0.3044 0.3241 9.42% check_for_negative_density() 10 0.05668 0.1001 0.1812 5.27% Castro::estTimeStep() 21 0.03253 0.07854 0.1218 3.54% Castro::initData() 1 0.03433 0.07348 0.12 3.49% FabArray::ParallelCopy_finish() 41 0.04631 0.06352 0.09849 2.86% amrex::Copy() 193 0.06649 0.08125 0.09495 2.76% FabArray::setVal() 143 0.05627 0.0675 0.07548 2.19% Castro::reset_internal_energy(Fab) 1008 0.04215 0.04588 0.04852 1.41% Castro::normalize_species() 62 0.04367 0.04486 0.04608 1.34% FabArray::ParallelCopy_nowait() 41 0.0347 0.03962 0.04149 1.21% FillPatchIterator::Initialize 41 0.02824 0.03223 0.03479 1.01% StateData::FillBoundary(geom) 41 0.02669 0.03089 0.03427 1.00% Gravity::interpolate_monopole_grav() 21 0.02637 0.02734 0.02941 0.85% Castro::construct_new_gravity_source() 10 0.02099 0.02342 0.02646 0.77% Castro::initialize_do_advance() 10 0.01149 0.01709 0.02294 0.67% Castro::computeTemp() 63 0.01656 0.01763 0.01852 0.54% VisMF::Write(FabArray) 2 0.00943 0.01021 0.01373 0.40% Castro::initialize_advance() 10 0.005347 0.01072 0.01358 0.39% FabArray::setDomainBndry() 41 0.007668 0.01072 0.01294 0.38% FabArray::Saxpy() 20 0.01004 0.0118 0.01285 0.37% Amr::writePlotFile() 2 0.007662 0.01089 0.01177 0.34% MultiFab::contains_nan() 20 0.009337 0.01049 0.01167 0.34% Castro::construct_old_gravity_source() 10 0.006323 0.008604 0.009178 0.27% Castro::initMFs() 1 0.006818 0.007364 0.007938 0.23% Castro::construct_new_source() 50 0.005225 0.005913 0.006324 0.18% main() 1 0.003977 0.004373 0.004646 0.14% Gravity::get_new_grav_vector() 11 0.002589 0.003371 0.003901 0.11% Amr::coarseTimeStep() 10 0.0007224 0.001583 0.002582 0.08% Gravity::get_old_grav_vector() 10 0.001494 0.001947 0.002474 0.07% Castro::finalize_do_advance() 10 0.0005469 0.001166 0.001281 0.04% AmrLevel::FillPatch() 41 0.0008174 0.0009825 0.001195 0.03% Amr::timeStep() 10 0.0001338 0.0001758 0.0003754 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002582 0.0002721 0.0002861 0.01% Castro::do_advance_ctu() 10 0.0001435 0.0001853 0.0002148 0.01% Castro::clean_state() 62 0.0001327 0.0001508 0.0001751 0.01% StateDataPhysBCFunct::() 41 0.0001043 0.0001173 0.0001311 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001037 0.0001152 0.0001307 0.00% Castro::Castro() 1 6.551e-05 8.435e-05 9.749e-05 0.00% FabArray::ParallelCopy() 41 8.457e-05 9.006e-05 9.464e-05 0.00% Castro::do_old_sources() 10 7.63e-05 8.504e-05 9.41e-05 0.00% FillPatchSingleLevel 41 6.129e-05 6.931e-05 8.342e-05 0.00% Castro::construct_old_source() 50 5.402e-05 6.489e-05 7.845e-05 0.00% Amr::FinalizeInit() 1 4.079e-06 1.415e-05 7.58e-05 0.00% Castro::do_new_sources() 10 5.205e-05 5.971e-05 6.614e-05 0.00% Castro::apply_source_to_state() 20 4.155e-05 4.998e-05 5.588e-05 0.00% Castro::subcycle_advance_ctu() 10 4.582e-05 5.106e-05 5.411e-05 0.00% Castro::construct_old_gravity() 10 3.191e-05 4.304e-05 5.338e-05 0.00% Amr::defBaseLevel() 1 3.91e-05 4.26e-05 5.034e-05 0.00% Castro::advance() 10 3.835e-05 4.095e-05 4.679e-05 0.00% Castro::construct_new_gravity() 10 2.924e-05 3.435e-05 4.137e-05 0.00% Castro::expand_state() 10 1.67e-05 2.545e-05 3.748e-05 0.00% Castro::check_for_nan() 20 2.256e-05 2.647e-05 3.006e-05 0.00% Castro::post_init() 1 1.377e-05 1.674e-05 1.976e-05 0.00% Castro::post_timestep() 10 1.334e-05 1.564e-05 1.814e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.079e-05 1.222e-05 1.786e-05 0.00% Amr::InitializeInit() 1 2.638e-06 4.176e-06 1.193e-05 0.00% Castro::computeNewDt() 9 8.226e-06 9.498e-06 1.072e-05 0.00% Castro::computeInitialDt() 2 5.361e-06 6.335e-06 7.449e-06 0.00% Amr::init() 1 2.123e-06 4.348e-06 5.669e-06 0.00% Amr::initialInit() 1 1.529e-06 2.648e-06 5.324e-06 0.00% Other 264 0.01567 0.02037 0.02287 0.66% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.439 3.44 3.441 100.00% Amr::coarseTimeStep() 10 3.238 3.238 3.238 94.10% Amr::timeStep() 10 3.225 3.226 3.227 93.77% Castro::advance() 10 3.21 3.21 3.211 93.30% Castro::subcycle_advance_ctu() 10 3.134 3.138 3.155 91.70% Castro::do_advance_ctu() 10 3.134 3.138 3.155 91.69% Castro::construct_ctu_hydro_source() 10 2.387 2.39 2.395 69.60% Gravity::make_radial_gravity() 21 0.3136 0.3221 0.3376 9.81% AmrLevel::FillPatch() 41 0.1851 0.2084 0.2196 6.38% Gravity::get_new_grav_vector() 11 0.2073 0.2093 0.2101 6.11% Castro::construct_old_gravity() 10 0.1912 0.196 0.2082 6.05% Gravity::get_old_grav_vector() 10 0.1906 0.1954 0.2076 6.03% FillPatchIterator::Initialize 41 0.1555 0.1775 0.1963 5.71% Amr::init() 1 0.1881 0.1897 0.1903 5.53% Castro::construct_new_gravity() 10 0.1832 0.1846 0.1859 5.40% check_for_negative_density() 10 0.05668 0.1001 0.1812 5.27% Amr::initialInit() 1 0.1722 0.1737 0.1742 5.06% Castro::initialize_do_advance() 10 0.1621 0.1691 0.1737 5.05% FillPatchIterator::FillFromLevel0() 41 0.1163 0.1345 0.1604 4.66% FillPatchSingleLevel 41 0.1162 0.1344 0.1603 4.66% Amr::InitializeInit() 1 0.0558 0.09704 0.1443 4.19% Amr::defBaseLevel() 1 0.0558 0.09704 0.1443 4.19% FabArray::ParallelCopy() 41 0.08675 0.1033 0.1334 3.88% Castro::expand_state() 10 0.1077 0.1156 0.1271 3.69% Castro::initData() 1 0.0383 0.07749 0.1239 3.60% Castro::estTimeStep() 21 0.03253 0.07854 0.1218 3.54% Amr::FinalizeInit() 1 0.0294 0.07664 0.1179 3.43% Castro::clean_state() 62 0.1093 0.1138 0.1178 3.42% Castro::do_old_sources() 10 0.09061 0.09823 0.103 2.99% FabArray::ParallelCopy_finish() 41 0.04631 0.06352 0.09849 2.86% amrex::Copy() 193 0.06649 0.08125 0.09495 2.76% Castro::computeInitialDt() 2 0.002687 0.05021 0.09158 2.66% FabArray::setVal() 143 0.05627 0.0675 0.07548 2.19% Castro::initialize_advance() 10 0.05081 0.06835 0.07296 2.12% Castro::do_new_sources() 10 0.05421 0.06179 0.06858 1.99% Castro::computeTemp() 63 0.059 0.06378 0.06731 1.96% Castro::reset_internal_energy(MultiFab) 63 0.04244 0.04615 0.0488 1.42% Castro::reset_internal_energy(Fab) 1008 0.04215 0.04588 0.04852 1.41% Castro::normalize_species() 62 0.04367 0.04486 0.04608 1.34% FabArray::ParallelCopy_nowait() 41 0.03482 0.03971 0.04158 1.21% StateDataPhysBCFunct::() 41 0.0268 0.03101 0.0344 1.00% StateData::FillBoundary(geom) 41 0.02669 0.03089 0.03427 1.00% Castro::construct_new_source() 50 0.02622 0.02933 0.03238 0.94% Gravity::interpolate_monopole_grav() 21 0.02637 0.02734 0.02941 0.85% Castro::finalize_do_advance() 10 0.01265 0.02013 0.02755 0.80% Castro::construct_new_gravity_source() 10 0.02099 0.02342 0.02646 0.77% Castro::post_init() 1 0.02589 0.02609 0.0264 0.77% Amr::writePlotFile() 2 0.0236 0.02389 0.02406 0.70% Castro::post_timestep() 10 0.01484 0.01542 0.01597 0.46% VisMF::Write(FabArray) 2 0.00943 0.01021 0.01373 0.40% FabArray::setDomainBndry() 41 0.007668 0.01072 0.01294 0.38% Castro::apply_source_to_state() 20 0.01008 0.01185 0.0129 0.38% FabArray::Saxpy() 20 0.01004 0.0118 0.01285 0.37% Castro::Castro() 1 0.009763 0.01156 0.01232 0.36% Castro::check_for_nan() 20 0.009361 0.01052 0.01169 0.34% MultiFab::contains_nan() 20 0.009337 0.01049 0.01167 0.34% Castro::computeNewDt() 9 0.009353 0.009372 0.009385 0.27% Castro::construct_old_source() 50 0.006377 0.008669 0.009243 0.27% Castro::construct_old_gravity_source() 10 0.006323 0.008604 0.009178 0.27% Castro::initMFs() 1 0.006818 0.007364 0.007938 0.23% AmrLevel::AmrLevel(dm) 1 0.005952 0.006315 0.006673 0.19% Other 264 0.02038 0.02697 0.03041 0.88% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 31 B 37 B 60 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8656 KiB 8665 KiB 8670 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6737 KiB 6741 KiB 6745 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7129 KiB 7138 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4550 KiB 4557 KiB 4578 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 205 KiB 228 KiB 245 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2795 KiB 2798 KiB 2800 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 232 KiB 238 KiB 250 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 40 KiB 46 KiB 62 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2026 KiB 2028 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 78 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 71 KiB 72 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.11-47-gc4fcda1fb2ea) finalized