Initializing AMReX (25.11-47-gc4fcda1fb2ea)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.11-47-gc4fcda1fb2ea) initialized Starting run at 06:17:20 UTC on 2025-11-28. Successfully read inputs file ... Castro git describe: 25.11-8-g389379f86 AMReX git describe: 25.11-47-gc4fcda1fb Microphysics git describe: 25.11-12-gfbb310ae reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014485662 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.354218717 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.346951941 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.323545967 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.325041419 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.387738388 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.308041432 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.300790038 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.313062943 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.302668974 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.30180906 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007662774 seconds Ending run at 06:17:23 UTC on 2025-11-28. Run time = 3.460685954 Run time without initialization = 3.27633036 Average number of zones advanced per microsecond: 0.800 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.4597 ... 3.4600 ... 3.4607 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2162 2.2752 2.3401 67.62% Gravity::make_radial_gravity() 21 0.2824 0.303 0.3141 9.08% check_for_negative_density() 10 0.03845 0.1157 0.1774 5.12% Castro::initData() 1 0.03436 0.07056 0.1193 3.45% Castro::estTimeStep() 21 0.03332 0.07871 0.117 3.38% amrex::Copy() 193 0.06745 0.08255 0.09151 2.64% FabArray::ParallelCopy_finish() 41 0.04492 0.05811 0.08089 2.34% FabArray::setVal() 143 0.06398 0.06947 0.07722 2.23% Castro::normalize_species() 62 0.0444 0.04629 0.05261 1.52% Castro::reset_internal_energy(Fab) 1008 0.04516 0.04695 0.05167 1.49% FabArray::ParallelCopy_nowait() 41 0.03544 0.04068 0.04234 1.22% FillPatchIterator::Initialize 41 0.02828 0.03326 0.03494 1.01% StateData::FillBoundary(geom) 41 0.02762 0.03111 0.0335 0.97% Gravity::interpolate_monopole_grav() 21 0.02656 0.0271 0.02831 0.82% Castro::construct_new_gravity_source() 10 0.02182 0.02345 0.02525 0.73% Castro::computeTemp() 63 0.01738 0.01936 0.02355 0.68% Castro::initialize_do_advance() 10 0.01185 0.01653 0.01787 0.52% Castro::initialize_advance() 10 0.01066 0.01223 0.01496 0.43% MultiFab::contains_nan() 20 0.009507 0.01127 0.01426 0.41% FabArray::Saxpy() 20 0.01023 0.01198 0.01331 0.38% FabArray::setDomainBndry() 41 0.007566 0.01058 0.01319 0.38% VisMF::Write(FabArray) 2 0.008774 0.00963 0.01225 0.35% Amr::writePlotFile() 2 0.007162 0.01015 0.01179 0.34% Castro::construct_old_gravity_source() 10 0.006501 0.008702 0.009455 0.27% Castro::initMFs() 1 0.006602 0.007195 0.007484 0.22% Castro::construct_new_source() 50 0.005652 0.005972 0.006243 0.18% Gravity::get_old_grav_vector() 10 0.001811 0.00249 0.004423 0.13% main() 1 0.004071 0.004157 0.004236 0.12% Gravity::get_new_grav_vector() 11 0.002905 0.003513 0.003865 0.11% Amr::coarseTimeStep() 10 0.001105 0.00139 0.001949 0.06% Castro::finalize_do_advance() 10 0.0005921 0.001044 0.001256 0.04% AmrLevel::FillPatch() 41 0.0008223 0.001035 0.001149 0.03% Amr::timeStep() 10 0.0001327 0.0001829 0.000437 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002601 0.0002788 0.000294 0.01% Castro::do_advance_ctu() 10 0.0001644 0.0001831 0.0001962 0.01% Castro::clean_state() 62 0.0001363 0.0001589 0.0001933 0.01% StateDataPhysBCFunct::() 41 9.967e-05 0.0001292 0.0001618 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001021 0.0001117 0.0001229 0.00% FabArray::ParallelCopy() 41 8.723e-05 9.359e-05 0.0001093 0.00% Castro::Castro() 1 6.162e-05 7.869e-05 0.0001073 0.00% Amr::FinalizeInit() 1 3.434e-06 1.668e-05 0.0001035 0.00% Castro::do_old_sources() 10 7.449e-05 8.475e-05 9.657e-05 0.00% Castro::do_new_sources() 10 5.277e-05 6.192e-05 7.831e-05 0.00% FillPatchSingleLevel 41 6.639e-05 7.043e-05 7.541e-05 0.00% Castro::construct_old_source() 50 5.223e-05 6.352e-05 7.322e-05 0.00% Castro::advance() 10 3.648e-05 4.559e-05 6.24e-05 0.00% Castro::apply_source_to_state() 20 4.334e-05 5.114e-05 5.88e-05 0.00% Castro::subcycle_advance_ctu() 10 4.38e-05 4.822e-05 5.58e-05 0.00% Castro::construct_old_gravity() 10 3.371e-05 4.194e-05 4.994e-05 0.00% Amr::defBaseLevel() 1 3.837e-05 4.224e-05 4.695e-05 0.00% Castro::construct_new_gravity() 10 2.916e-05 3.312e-05 3.878e-05 0.00% Castro::check_for_nan() 20 2.393e-05 2.721e-05 3.661e-05 0.00% Castro::expand_state() 10 2.1e-05 2.605e-05 3.14e-05 0.00% Castro::post_init() 1 1.516e-05 1.908e-05 3.022e-05 0.00% Castro::post_timestep() 10 1.327e-05 1.549e-05 2.011e-05 0.00% Castro::computeNewDt() 9 8.495e-06 9.402e-06 9.854e-06 0.00% Amr::InitializeInit() 1 2.585e-06 3.821e-06 9.379e-06 0.00% Castro::computeInitialDt() 2 4.685e-06 6.57e-06 8.238e-06 0.00% Amr::init() 1 1.592e-06 4.042e-06 6.611e-06 0.00% Amr::initialInit() 1 1.609e-06 3.088e-06 5.416e-06 0.00% Other 265 0.01623 0.0187 0.02119 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.46 3.46 3.461 100.00% Amr::coarseTimeStep() 10 3.264 3.264 3.264 94.33% Amr::timeStep() 10 3.252 3.252 3.253 93.99% Castro::advance() 10 3.236 3.236 3.237 93.53% Castro::subcycle_advance_ctu() 10 3.158 3.161 3.165 91.46% Castro::do_advance_ctu() 10 3.158 3.161 3.165 91.46% Castro::construct_ctu_hydro_source() 10 2.399 2.411 2.417 69.84% Gravity::make_radial_gravity() 21 0.2988 0.3195 0.3278 9.47% AmrLevel::FillPatch() 41 0.1893 0.2082 0.2184 6.31% Gravity::get_new_grav_vector() 11 0.205 0.2061 0.2072 5.99% Castro::construct_old_gravity() 10 0.1831 0.1991 0.2062 5.96% Gravity::get_old_grav_vector() 10 0.1819 0.1983 0.2051 5.93% Castro::construct_new_gravity() 10 0.1826 0.1837 0.1846 5.33% Amr::init() 1 0.1831 0.1833 0.1841 5.32% FillPatchIterator::Initialize 41 0.158 0.1742 0.1819 5.26% Castro::initialize_do_advance() 10 0.1609 0.168 0.1811 5.23% check_for_negative_density() 10 0.03845 0.1157 0.1774 5.12% Amr::initialInit() 1 0.1684 0.1686 0.1694 4.89% FillPatchIterator::FillFromLevel0() 41 0.1191 0.1304 0.1445 4.17% FillPatchSingleLevel 41 0.119 0.1303 0.1444 4.17% Amr::InitializeInit() 1 0.05625 0.09227 0.1419 4.10% Amr::defBaseLevel() 1 0.05625 0.09226 0.1419 4.10% Castro::clean_state() 62 0.1145 0.1182 0.129 3.73% Castro::initData() 1 0.03792 0.07435 0.1237 3.57% Castro::estTimeStep() 21 0.03332 0.07871 0.117 3.38% FabArray::ParallelCopy() 41 0.08657 0.09899 0.1165 3.37% Castro::expand_state() 10 0.1067 0.1108 0.1149 3.32% Amr::FinalizeInit() 1 0.02653 0.07637 0.1122 3.24% Castro::do_old_sources() 10 0.09256 0.1023 0.1122 3.24% amrex::Copy() 193 0.06745 0.08255 0.09151 2.64% Castro::computeInitialDt() 2 0.002435 0.05233 0.08826 2.55% FabArray::ParallelCopy_finish() 41 0.04492 0.05811 0.08089 2.34% FabArray::setVal() 143 0.06398 0.06947 0.07722 2.23% Castro::initialize_advance() 10 0.06746 0.07183 0.07545 2.18% Castro::computeTemp() 63 0.06282 0.06659 0.07128 2.06% Castro::do_new_sources() 10 0.05742 0.06207 0.06636 1.92% Castro::normalize_species() 62 0.0444 0.04629 0.05261 1.52% Castro::reset_internal_energy(MultiFab) 63 0.04544 0.04723 0.05195 1.50% Castro::reset_internal_energy(Fab) 1008 0.04516 0.04695 0.05167 1.49% FabArray::ParallelCopy_nowait() 41 0.03556 0.04078 0.04242 1.23% StateDataPhysBCFunct::() 41 0.02776 0.03124 0.03363 0.97% StateData::FillBoundary(geom) 41 0.02762 0.03111 0.0335 0.97% Castro::construct_new_source() 50 0.02748 0.02942 0.03125 0.90% Gravity::interpolate_monopole_grav() 21 0.02656 0.0271 0.02831 0.82% Castro::construct_new_gravity_source() 10 0.02182 0.02345 0.02525 0.73% Castro::post_init() 1 0.02352 0.02362 0.02378 0.69% Amr::writePlotFile() 2 0.02234 0.02241 0.02252 0.65% Castro::finalize_do_advance() 10 0.01288 0.01804 0.02209 0.64% Castro::post_timestep() 10 0.01532 0.01596 0.0163 0.47% Castro::check_for_nan() 20 0.009531 0.01129 0.01429 0.41% MultiFab::contains_nan() 20 0.009507 0.01127 0.01426 0.41% Castro::apply_source_to_state() 20 0.01029 0.01203 0.01336 0.39% FabArray::Saxpy() 20 0.01023 0.01198 0.01331 0.38% FabArray::setDomainBndry() 41 0.007566 0.01058 0.01319 0.38% VisMF::Write(FabArray) 2 0.008774 0.00963 0.01225 0.35% Castro::Castro() 1 0.009365 0.01148 0.01205 0.35% Castro::construct_old_source() 50 0.006554 0.008765 0.009517 0.28% Castro::construct_old_gravity_source() 10 0.006501 0.008702 0.009455 0.27% Castro::computeNewDt() 9 0.009393 0.009407 0.009421 0.27% Castro::initMFs() 1 0.006602 0.007195 0.007484 0.22% Other 265 0.0265 0.02995 0.03357 0.97% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 39 B 78 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8671 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6752 KiB 6758 KiB 6760 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7135 KiB 7142 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4560 KiB 4565 KiB 4572 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 206 KiB 223 KiB 232 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 15 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2803 KiB 2805 KiB 2806 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 220 KiB 235 KiB 241 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 42 KiB 51 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2028 KiB 2030 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 76 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 73 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.11-47-gc4fcda1fb2ea) finalized