Initializing AMReX (25.11-47-gc4fcda1fb2ea)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.11-47-gc4fcda1fb2ea) initialized Starting run at 06:23:41 UTC on 2025-12-01. Successfully read inputs file ... Castro git describe: 25.11-9-g19a1b10cd AMReX git describe: 25.11-47-gc4fcda1fb Microphysics git describe: 25.11-12-gfbb310ae reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015388716 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.35148745 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.344476802 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.323591311 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.322802263 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.377458385 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.310568279 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.301097972 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.30190919 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.299282346 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.303473154 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007424991 seconds Ending run at 06:23:44 UTC on 2025-12-01. Run time = 3.414590367 Run time without initialization = 3.248642222 Average number of zones advanced per microsecond: 0.807 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4138 ... 3.4143 ... 3.4148 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2029 2.2745 2.3130 67.74% Gravity::make_radial_gravity() 21 0.2811 0.2879 0.3066 8.98% check_for_negative_density() 10 0.04963 0.09252 0.1664 4.87% Castro::initData() 1 0.03681 0.06897 0.09935 2.91% amrex::Copy() 193 0.07118 0.08546 0.09857 2.89% Castro::estTimeStep() 21 0.0251 0.05904 0.09367 2.74% FabArray::ParallelCopy_finish() 41 0.04412 0.06631 0.09346 2.74% FabArray::setVal() 143 0.06663 0.07141 0.07866 2.30% Castro::reset_internal_energy(Fab) 1008 0.04519 0.04652 0.04766 1.40% Castro::normalize_species() 62 0.0442 0.04506 0.04689 1.37% FabArray::ParallelCopy_nowait() 41 0.03564 0.04113 0.04302 1.26% FillPatchIterator::Initialize 41 0.02786 0.03447 0.03707 1.09% Gravity::interpolate_monopole_grav() 21 0.02641 0.02767 0.03383 0.99% StateData::FillBoundary(geom) 41 0.02625 0.03109 0.03349 0.98% Castro::construct_new_gravity_source() 10 0.02279 0.02363 0.02474 0.72% Castro::computeTemp() 63 0.0177 0.01803 0.01846 0.54% Castro::initialize_do_advance() 10 0.01189 0.01682 0.01808 0.53% FabArray::setDomainBndry() 41 0.007693 0.01208 0.01696 0.50% Castro::initialize_advance() 10 0.01044 0.01253 0.01472 0.43% FabArray::Saxpy() 20 0.0113 0.01228 0.01319 0.39% VisMF::Write(FabArray) 2 0.009197 0.009745 0.01228 0.36% MultiFab::contains_nan() 20 0.009523 0.01041 0.01178 0.34% Amr::writePlotFile() 2 0.00759 0.01036 0.01107 0.32% Castro::construct_old_gravity_source() 10 0.006921 0.008995 0.009616 0.28% Castro::initMFs() 1 0.006514 0.007206 0.007949 0.23% Castro::construct_new_source() 50 0.005567 0.006013 0.006337 0.19% main() 1 0.003568 0.00408 0.004541 0.13% Gravity::get_new_grav_vector() 11 0.00295 0.003635 0.003949 0.12% Gravity::get_old_grav_vector() 10 0.001452 0.002152 0.002735 0.08% Amr::coarseTimeStep() 10 0.0007974 0.001513 0.001981 0.06% Castro::finalize_do_advance() 10 0.0005627 0.001087 0.001194 0.03% AmrLevel::FillPatch() 41 0.000772 0.0009485 0.001088 0.03% Amr::timeStep() 10 0.0001354 0.0001758 0.00036 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002494 0.0002711 0.0002882 0.01% Castro::do_advance_ctu() 10 0.0001691 0.0001839 0.0002001 0.01% StateDataPhysBCFunct::() 41 0.0001125 0.0001321 0.0001763 0.01% Castro::clean_state() 62 0.0001444 0.0001534 0.0001718 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001032 0.000118 0.0001588 0.00% FabArray::ParallelCopy() 41 8.423e-05 9.815e-05 0.0001289 0.00% Castro::do_old_sources() 10 7.134e-05 8.891e-05 0.0001005 0.00% Amr::FinalizeInit() 1 3.656e-06 1.546e-05 9.278e-05 0.00% Castro::Castro() 1 5.307e-05 7.113e-05 8.546e-05 0.00% Castro::construct_old_source() 50 5.023e-05 6.43e-05 8.109e-05 0.00% FillPatchSingleLevel 41 6.607e-05 7.114e-05 7.747e-05 0.00% Castro::apply_source_to_state() 20 4.713e-05 5.334e-05 7.526e-05 0.00% Castro::do_new_sources() 10 4.786e-05 6.018e-05 7.233e-05 0.00% Castro::subcycle_advance_ctu() 10 4.297e-05 4.956e-05 6.472e-05 0.00% Castro::construct_new_gravity() 10 2.939e-05 3.602e-05 5.247e-05 0.00% Castro::advance() 10 3.497e-05 4.088e-05 4.726e-05 0.00% Amr::defBaseLevel() 1 3.858e-05 4.184e-05 4.67e-05 0.00% Castro::construct_old_gravity() 10 3.418e-05 3.821e-05 4.664e-05 0.00% Castro::expand_state() 10 1.904e-05 2.398e-05 2.801e-05 0.00% Castro::check_for_nan() 20 2.4e-05 2.538e-05 2.667e-05 0.00% Castro::post_init() 1 1.495e-05 1.704e-05 2.002e-05 0.00% Castro::post_timestep() 10 1.38e-05 1.553e-05 1.745e-05 0.00% Castro::computeNewDt() 9 8.319e-06 1.029e-05 1.568e-05 0.00% Amr::init() 1 2.179e-06 4.997e-06 1.059e-05 0.00% Amr::initialInit() 1 1.495e-06 3.712e-06 1.023e-05 0.00% Amr::InitializeInit() 1 2.717e-06 3.825e-06 9.428e-06 0.00% Castro::computeInitialDt() 2 5.333e-06 6.538e-06 7.877e-06 0.00% Other 265 0.01706 0.01891 0.02111 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.414 3.414 3.415 100.00% Amr::coarseTimeStep() 10 3.237 3.237 3.237 94.79% Amr::timeStep() 10 3.224 3.225 3.226 94.46% Castro::advance() 10 3.208 3.209 3.209 93.98% Castro::subcycle_advance_ctu() 10 3.129 3.132 3.134 91.79% Castro::do_advance_ctu() 10 3.129 3.131 3.134 91.78% Castro::construct_ctu_hydro_source() 10 2.383 2.388 2.391 70.02% Gravity::make_radial_gravity() 21 0.2985 0.3054 0.3211 9.40% AmrLevel::FillPatch() 41 0.2008 0.2189 0.2324 6.81% Gravity::get_new_grav_vector() 11 0.2057 0.2062 0.207 6.06% Castro::construct_old_gravity() 10 0.1869 0.1918 0.2047 5.99% Gravity::get_old_grav_vector() 10 0.1862 0.1911 0.2041 5.98% FillPatchIterator::Initialize 41 0.1699 0.1856 0.1971 5.77% Castro::construct_new_gravity() 10 0.1801 0.181 0.182 5.33% Castro::initialize_do_advance() 10 0.1499 0.1642 0.1685 4.93% Amr::init() 1 0.1655 0.1657 0.1664 4.87% check_for_negative_density() 10 0.04963 0.09252 0.1664 4.87% FillPatchIterator::FillFromLevel0() 41 0.1181 0.139 0.1558 4.56% FillPatchSingleLevel 41 0.118 0.1389 0.1557 4.56% Amr::initialInit() 1 0.1499 0.1501 0.1507 4.41% FabArray::ParallelCopy() 41 0.08739 0.1076 0.1293 3.79% Amr::InitializeInit() 1 0.05866 0.09027 0.1207 3.53% Amr::defBaseLevel() 1 0.05866 0.09027 0.1207 3.53% Castro::clean_state() 62 0.1129 0.1151 0.1172 3.43% Castro::expand_state() 10 0.1012 0.1107 0.1156 3.39% Castro::do_old_sources() 10 0.09855 0.1066 0.1119 3.28% Castro::initData() 1 0.04048 0.07282 0.1033 3.03% amrex::Copy() 193 0.07118 0.08546 0.09857 2.89% Castro::estTimeStep() 21 0.0251 0.05904 0.09367 2.74% FabArray::ParallelCopy_finish() 41 0.04412 0.06631 0.09346 2.74% Amr::FinalizeInit() 1 0.02926 0.05987 0.09132 2.67% FabArray::setVal() 143 0.06663 0.07141 0.07866 2.30% Castro::initialize_advance() 10 0.07154 0.07421 0.07699 2.25% Castro::computeTemp() 63 0.06318 0.06482 0.06641 1.94% Castro::do_new_sources() 10 0.05993 0.06257 0.06628 1.94% Castro::computeInitialDt() 2 0.002315 0.03278 0.06432 1.88% Castro::reset_internal_energy(MultiFab) 63 0.04548 0.04679 0.04795 1.40% Castro::reset_internal_energy(Fab) 1008 0.04519 0.04652 0.04766 1.40% Castro::normalize_species() 62 0.0442 0.04506 0.04689 1.37% FabArray::ParallelCopy_nowait() 41 0.03574 0.04122 0.04314 1.26% Gravity::interpolate_monopole_grav() 21 0.02641 0.02767 0.03383 0.99% StateDataPhysBCFunct::() 41 0.02636 0.03122 0.03366 0.99% StateData::FillBoundary(geom) 41 0.02625 0.03109 0.03349 0.98% Castro::construct_new_source() 50 0.02875 0.02964 0.03081 0.90% Castro::post_init() 1 0.02619 0.02654 0.02718 0.80% Castro::construct_new_gravity_source() 10 0.02279 0.02363 0.02474 0.72% Amr::writePlotFile() 2 0.02251 0.02311 0.02329 0.68% Castro::finalize_do_advance() 10 0.01366 0.01811 0.02135 0.63% FabArray::setDomainBndry() 41 0.007693 0.01208 0.01696 0.50% Castro::post_timestep() 10 0.01522 0.01562 0.01607 0.47% Castro::apply_source_to_state() 20 0.01135 0.01233 0.01324 0.39% FabArray::Saxpy() 20 0.0113 0.01228 0.01319 0.39% VisMF::Write(FabArray) 2 0.009197 0.009745 0.01228 0.36% Castro::Castro() 1 0.009713 0.01112 0.01215 0.36% Castro::check_for_nan() 20 0.009548 0.01043 0.01181 0.35% MultiFab::contains_nan() 20 0.009523 0.01041 0.01178 0.34% Castro::construct_old_source() 50 0.006971 0.00906 0.009681 0.28% Castro::construct_old_gravity_source() 10 0.006921 0.008995 0.009616 0.28% Castro::computeNewDt() 9 0.009226 0.009245 0.009258 0.27% Castro::initMFs() 1 0.006514 0.007206 0.007949 0.23% Other 265 0.02734 0.03014 0.03386 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 33 B 48 B 61 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8660 KiB 8670 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6781 KiB 6787 KiB 6789 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7140 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4577 KiB 4581 KiB 4585 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 218 KiB 232 KiB 245 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2815 KiB 2818 KiB 2819 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 222 KiB 227 KiB 239 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 44 KiB 52 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 77 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 71 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.11-47-gc4fcda1fb2ea) finalized