Initializing AMReX (25.11-47-gc4fcda1fb2ea)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.11-47-gc4fcda1fb2ea) initialized Starting run at 06:17:32 UTC on 2025-12-02. Successfully read inputs file ... Castro git describe: 25.11-9-g19a1b10cd AMReX git describe: 25.11-47-gc4fcda1fb Microphysics git describe: 25.12 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015107537 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.348082495 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.340847487 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.326495321 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.325710921 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.357910971 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.309863907 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.304617868 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.304160134 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.305454988 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.303814942 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007522105 seconds Ending run at 06:17:35 UTC on 2025-12-02. Run time = 3.420322785 Run time without initialization = 3.239734846 Average number of zones advanced per microsecond: 0.809 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4194 ... 3.4197 ... 3.4205 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1986 2.2813 2.3283 68.07% Gravity::make_radial_gravity() 21 0.2883 0.2957 0.3084 9.02% check_for_negative_density() 10 0.0258 0.07444 0.1592 4.65% Castro::initData() 1 0.035 0.07244 0.1144 3.34% Castro::estTimeStep() 21 0.02437 0.06958 0.1091 3.19% amrex::Copy() 193 0.08115 0.08976 0.1019 2.98% FabArray::setVal() 143 0.0666 0.07279 0.07804 2.28% FabArray::ParallelCopy_finish() 41 0.03969 0.04996 0.05685 1.66% Castro::reset_internal_energy(Fab) 1008 0.04369 0.04624 0.04874 1.42% Castro::normalize_species() 62 0.04418 0.04502 0.04605 1.35% FabArray::ParallelCopy_nowait() 41 0.0392 0.04204 0.04398 1.29% FillPatchIterator::Initialize 41 0.02988 0.0344 0.03644 1.07% StateData::FillBoundary(geom) 41 0.02734 0.03163 0.03457 1.01% Gravity::interpolate_monopole_grav() 21 0.02732 0.02799 0.02878 0.84% Castro::construct_new_gravity_source() 10 0.02301 0.02401 0.02473 0.72% Castro::computeTemp() 63 0.01703 0.01791 0.01852 0.54% Castro::initialize_do_advance() 10 0.01692 0.01811 0.01851 0.54% Castro::initialize_advance() 10 0.01054 0.01263 0.01522 0.44% FabArray::Saxpy() 20 0.01161 0.01278 0.01365 0.40% FabArray::setDomainBndry() 41 0.008074 0.01127 0.01327 0.39% VisMF::Write(FabArray) 2 0.009284 0.009838 0.01239 0.36% MultiFab::contains_nan() 20 0.009904 0.01058 0.01135 0.33% Amr::writePlotFile() 2 0.00737 0.01012 0.01075 0.31% Castro::construct_old_gravity_source() 10 0.008989 0.00946 0.009845 0.29% Castro::initMFs() 1 0.006633 0.00737 0.008044 0.24% Castro::construct_new_source() 50 0.006079 0.006374 0.006868 0.20% main() 1 0.004125 0.004269 0.004471 0.13% Gravity::get_new_grav_vector() 11 0.003248 0.003705 0.004215 0.12% Gravity::get_old_grav_vector() 10 0.001863 0.002173 0.002669 0.08% Amr::coarseTimeStep() 10 0.0008986 0.001922 0.002467 0.07% Castro::finalize_do_advance() 10 0.001367 0.00148 0.001991 0.06% AmrLevel::FillPatch() 41 0.001039 0.001185 0.001406 0.04% Amr::timeStep() 10 0.0001379 0.0001916 0.0004937 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002642 0.0002796 0.0002967 0.01% Castro::do_advance_ctu() 10 0.0001479 0.0001871 0.0002535 0.01% Castro::clean_state() 62 0.0001376 0.0001608 0.0001858 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001069 0.000121 0.0001368 0.00% StateDataPhysBCFunct::() 41 0.0001093 0.000124 0.0001341 0.00% AmrLevel::AmrLevel(dm) 1 1.032e-05 2.483e-05 0.0001182 0.00% Amr::initialInit() 1 1.427e-06 1.794e-05 0.0001147 0.00% FabArray::ParallelCopy() 41 8.879e-05 9.707e-05 0.0001066 0.00% Castro::do_old_sources() 10 7.956e-05 8.769e-05 9.595e-05 0.00% Castro::construct_old_source() 50 5.643e-05 7.098e-05 9.296e-05 0.00% Amr::FinalizeInit() 1 3.753e-06 1.52e-05 9.148e-05 0.00% Castro::Castro() 1 6.521e-05 7.199e-05 8.208e-05 0.00% FillPatchSingleLevel 41 6.627e-05 7.245e-05 7.834e-05 0.00% Castro::do_new_sources() 10 5.123e-05 6.361e-05 7.071e-05 0.00% Castro::subcycle_advance_ctu() 10 4.428e-05 5.416e-05 6.369e-05 0.00% Castro::apply_source_to_state() 20 4.88e-05 5.303e-05 6.24e-05 0.00% Castro::advance() 10 3.894e-05 4.506e-05 5.482e-05 0.00% Amr::defBaseLevel() 1 4.03e-05 4.58e-05 5.016e-05 0.00% Castro::construct_old_gravity() 10 3.308e-05 4.084e-05 4.652e-05 0.00% Castro::construct_new_gravity() 10 2.95e-05 3.424e-05 4.227e-05 0.00% Castro::check_for_nan() 20 2.137e-05 2.542e-05 3.038e-05 0.00% Castro::expand_state() 10 1.945e-05 2.449e-05 2.955e-05 0.00% Castro::post_init() 1 1.531e-05 1.779e-05 2.16e-05 0.00% Castro::post_timestep() 10 1.302e-05 1.552e-05 1.85e-05 0.00% Castro::computeNewDt() 9 7.508e-06 9.266e-06 1.107e-05 0.00% Amr::InitializeInit() 1 2.787e-06 4.084e-06 9.058e-06 0.00% Castro::computeInitialDt() 2 5.218e-06 6.273e-06 7.339e-06 0.00% Amr::init() 1 1.671e-06 2.33e-06 5.103e-06 0.00% Other 264 0.01649 0.01927 0.02142 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.419 3.42 3.421 100.00% Amr::coarseTimeStep() 10 3.228 3.228 3.228 94.37% Amr::timeStep() 10 3.215 3.215 3.216 94.03% Castro::advance() 10 3.199 3.2 3.2 93.56% Castro::subcycle_advance_ctu() 10 3.12 3.122 3.124 91.33% Castro::do_advance_ctu() 10 3.12 3.122 3.124 91.33% Castro::construct_ctu_hydro_source() 10 2.373 2.376 2.378 69.54% Gravity::make_radial_gravity() 21 0.3071 0.3149 0.3234 9.45% AmrLevel::FillPatch() 41 0.1862 0.2042 0.2205 6.45% Gravity::get_new_grav_vector() 11 0.2052 0.2066 0.2079 6.08% Castro::construct_old_gravity() 10 0.188 0.1947 0.2025 5.92% Gravity::get_old_grav_vector() 10 0.1872 0.194 0.2017 5.90% Castro::construct_new_gravity() 10 0.1825 0.1832 0.1847 5.40% FillPatchIterator::Initialize 41 0.1558 0.1698 0.1843 5.39% Amr::init() 1 0.1795 0.1797 0.1805 5.28% Castro::initialize_do_advance() 10 0.1583 0.1663 0.1742 5.09% Amr::initialInit() 1 0.1642 0.1645 0.1652 4.83% check_for_negative_density() 10 0.0258 0.07444 0.1592 4.65% Amr::InitializeInit() 1 0.05629 0.09418 0.1368 4.00% Amr::defBaseLevel() 1 0.05629 0.09418 0.1368 4.00% FillPatchIterator::FillFromLevel0() 41 0.1127 0.1241 0.1357 3.97% FillPatchSingleLevel 41 0.1126 0.124 0.1356 3.97% Castro::expand_state() 10 0.1025 0.1109 0.1185 3.46% Castro::initData() 1 0.03896 0.0762 0.1179 3.45% Castro::clean_state() 62 0.1123 0.1149 0.1171 3.42% Castro::estTimeStep() 21 0.02437 0.06958 0.1091 3.19% Amr::FinalizeInit() 1 0.02758 0.07025 0.1081 3.16% Castro::do_old_sources() 10 0.09365 0.1003 0.1051 3.07% amrex::Copy() 193 0.08115 0.08976 0.1019 2.98% FabArray::ParallelCopy() 41 0.08204 0.0922 0.1009 2.95% Castro::computeInitialDt() 2 0.002373 0.04508 0.0829 2.42% FabArray::setVal() 143 0.0666 0.07279 0.07804 2.28% Castro::initialize_advance() 10 0.07214 0.07397 0.07606 2.22% Castro::computeTemp() 63 0.06099 0.06444 0.06725 1.97% Castro::do_new_sources() 10 0.06196 0.06443 0.06683 1.95% FabArray::ParallelCopy_finish() 41 0.03969 0.04996 0.05685 1.66% Castro::reset_internal_energy(MultiFab) 63 0.04396 0.04652 0.04903 1.43% Castro::reset_internal_energy(Fab) 1008 0.04369 0.04624 0.04874 1.42% Castro::normalize_species() 62 0.04418 0.04502 0.04605 1.35% FabArray::ParallelCopy_nowait() 41 0.03931 0.04214 0.04409 1.29% StateDataPhysBCFunct::() 41 0.02748 0.03175 0.03469 1.01% StateData::FillBoundary(geom) 41 0.02734 0.03163 0.03457 1.01% Castro::construct_new_source() 50 0.02933 0.03038 0.03119 0.91% Gravity::interpolate_monopole_grav() 21 0.02732 0.02799 0.02878 0.84% Castro::post_init() 1 0.02459 0.02474 0.02486 0.73% Castro::construct_new_gravity_source() 10 0.02301 0.02401 0.02473 0.72% Amr::writePlotFile() 2 0.02287 0.02292 0.02296 0.67% Castro::finalize_do_advance() 10 0.01326 0.01675 0.01999 0.58% Castro::post_timestep() 10 0.01511 0.01566 0.01621 0.47% Castro::apply_source_to_state() 20 0.01166 0.01283 0.01371 0.40% FabArray::Saxpy() 20 0.01161 0.01278 0.01365 0.40% FabArray::setDomainBndry() 41 0.008074 0.01127 0.01327 0.39% Castro::Castro() 1 0.009533 0.01139 0.01241 0.36% VisMF::Write(FabArray) 2 0.009284 0.009838 0.01239 0.36% Castro::check_for_nan() 20 0.009931 0.0106 0.01138 0.33% MultiFab::contains_nan() 20 0.009904 0.01058 0.01135 0.33% Castro::construct_old_source() 50 0.009052 0.009531 0.009918 0.29% Castro::construct_old_gravity_source() 10 0.008989 0.00946 0.009845 0.29% Castro::computeNewDt() 9 0.009238 0.009247 0.009254 0.27% Castro::initMFs() 1 0.006633 0.00737 0.008044 0.24% AmrLevel::AmrLevel(dm) 1 0.005567 0.006248 0.006574 0.19% Other 264 0.0213 0.02451 0.0278 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 34 B 39 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8669 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6753 KiB 6759 KiB 6761 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7133 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4556 KiB 4560 KiB 4563 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 202 KiB 222 KiB 240 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2803 KiB 2806 KiB 2807 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 228 KiB 234 KiB 240 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 36 KiB 40 KiB 43 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 77 KiB 77 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 70 KiB 72 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.11-47-gc4fcda1fb2ea) finalized