Initializing AMReX (25.11-47-gc4fcda1fb2ea)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.11-47-gc4fcda1fb2ea) initialized Starting run at 06:17:25 UTC on 2025-12-03. Successfully read inputs file ... Castro git describe: 25.11-9-g19a1b10cd AMReX git describe: 25.11-47-gc4fcda1fb Microphysics git describe: 25.12 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015154582 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.355972615 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.336667682 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.327029334 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.320056574 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.378440942 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.313181094 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.304091864 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.303775935 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.301684102 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.303244174 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007738424 seconds Ending run at 06:17:28 UTC on 2025-12-03. Run time = 3.421342604 Run time without initialization = 3.257326964 Average number of zones advanced per microsecond: 0.805 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4200 ... 3.4207 ... 3.4215 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2030 2.2732 2.3252 67.96% Gravity::make_radial_gravity() 21 0.2879 0.2962 0.3136 9.16% check_for_negative_density() 10 0.05455 0.1094 0.189 5.52% Castro::estTimeStep() 21 0.02457 0.06128 0.1014 2.96% FabArray::ParallelCopy_finish() 41 0.0414 0.06282 0.09986 2.92% Castro::initData() 1 0.0347 0.06925 0.09971 2.91% amrex::Copy() 193 0.06174 0.07893 0.08758 2.56% FabArray::setVal() 143 0.05351 0.06526 0.07141 2.09% Castro::reset_internal_energy(Fab) 1008 0.04347 0.04649 0.04959 1.45% FabArray::ParallelCopy_nowait() 41 0.03477 0.04087 0.04787 1.40% Castro::normalize_species() 62 0.04425 0.04494 0.04623 1.35% FillPatchIterator::Initialize 41 0.02721 0.03264 0.03793 1.11% StateData::FillBoundary(geom) 41 0.02676 0.03089 0.03421 1.00% Gravity::interpolate_monopole_grav() 21 0.02621 0.02673 0.02737 0.80% Castro::construct_new_gravity_source() 10 0.02282 0.02453 0.02668 0.78% Castro::computeTemp() 63 0.01681 0.01892 0.02626 0.77% Castro::initialize_do_advance() 10 0.0112 0.01649 0.01787 0.52% Castro::initialize_advance() 10 0.005425 0.0108 0.01405 0.41% VisMF::Write(FabArray) 2 0.009346 0.009998 0.01351 0.39% FabArray::Saxpy() 20 0.01068 0.0123 0.01332 0.39% FabArray::setDomainBndry() 41 0.007588 0.01026 0.01283 0.37% MultiFab::contains_nan() 20 0.009745 0.01048 0.01157 0.34% Amr::writePlotFile() 2 0.007641 0.01012 0.0106 0.31% Castro::construct_old_gravity_source() 10 0.007045 0.00936 0.01004 0.29% Castro::initMFs() 1 0.006444 0.007065 0.008455 0.25% Castro::enforce_min_density() 62 0.005703 0.006014 0.0063 0.18% Castro::construct_new_source() 50 0.005391 0.005926 0.006142 0.18% main() 1 0.003973 0.00442 0.004724 0.14% Gravity::get_new_grav_vector() 11 0.002761 0.00338 0.003918 0.11% Amr::coarseTimeStep() 10 0.001602 0.002802 0.003891 0.11% Gravity::get_old_grav_vector() 10 0.001482 0.001942 0.002193 0.06% Castro::finalize_do_advance() 10 0.0005554 0.001186 0.001612 0.05% AmrLevel::FillPatch() 41 0.0007306 0.001042 0.00116 0.03% Amr::timeStep() 10 0.0001458 0.0001826 0.0003831 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002581 0.0002733 0.0002877 0.01% Castro::do_advance_ctu() 10 0.000167 0.0001889 0.0002148 0.01% StateDataPhysBCFunct::() 41 0.000107 0.0001259 0.0001684 0.00% Castro::clean_state() 62 0.0001433 0.0001532 0.000163 0.00% FabArray::ParallelCopy() 41 8.22e-05 9.565e-05 0.0001172 0.00% FillPatchIterator::FillFromLevel0() 41 9.743e-05 0.0001078 0.0001166 0.00% Castro::do_old_sources() 10 7.78e-05 9.304e-05 0.000109 0.00% Castro::Castro() 1 4.581e-05 7.079e-05 9.255e-05 0.00% Amr::FinalizeInit() 1 3.531e-06 1.402e-05 8.251e-05 0.00% FillPatchSingleLevel 41 6.631e-05 7.195e-05 8.07e-05 0.00% Castro::construct_old_source() 50 4.676e-05 6.723e-05 7.946e-05 0.00% Castro::construct_old_gravity() 10 3.318e-05 4.586e-05 7.16e-05 0.00% Castro::do_new_sources() 10 5.814e-05 6.23e-05 6.486e-05 0.00% Castro::apply_source_to_state() 20 4.268e-05 4.941e-05 5.689e-05 0.00% Castro::subcycle_advance_ctu() 10 4.004e-05 4.738e-05 5.064e-05 0.00% Castro::advance() 10 3.786e-05 4.382e-05 4.761e-05 0.00% Amr::defBaseLevel() 1 3.549e-05 4e-05 4.548e-05 0.00% Castro::construct_new_gravity() 10 2.973e-05 3.578e-05 3.887e-05 0.00% Castro::check_for_nan() 20 2.203e-05 2.677e-05 3.191e-05 0.00% Castro::expand_state() 10 2.005e-05 2.381e-05 2.927e-05 0.00% Castro::post_init() 1 1.433e-05 1.63e-05 2.02e-05 0.00% Castro::post_timestep() 10 1.472e-05 1.594e-05 1.701e-05 0.00% Castro::computeNewDt() 9 8.418e-06 9.273e-06 1.023e-05 0.00% Amr::InitializeInit() 1 2.485e-06 3.693e-06 8.681e-06 0.00% Castro::computeInitialDt() 2 5.461e-06 6.651e-06 8.065e-06 0.00% Amr::init() 1 1.823e-06 4.369e-06 5.702e-06 0.00% Amr::initialInit() 1 1.537e-06 2.324e-06 4.752e-06 0.00% Other 203 0.009304 0.01286 0.01511 0.44% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.42 3.421 3.422 100.00% Amr::coarseTimeStep() 10 3.245 3.245 3.245 94.84% Amr::timeStep() 10 3.23 3.231 3.233 94.48% Castro::advance() 10 3.215 3.215 3.216 93.99% Castro::subcycle_advance_ctu() 10 3.138 3.144 3.16 92.35% Castro::do_advance_ctu() 10 3.138 3.144 3.16 92.34% Castro::construct_ctu_hydro_source() 10 2.393 2.403 2.412 70.50% Gravity::make_radial_gravity() 21 0.3041 0.3122 0.3268 9.55% AmrLevel::FillPatch() 41 0.2026 0.2113 0.2199 6.43% Gravity::get_new_grav_vector() 11 0.2051 0.2065 0.2076 6.07% Castro::construct_old_gravity() 10 0.18 0.1856 0.1983 5.80% Gravity::get_old_grav_vector() 10 0.1793 0.185 0.1977 5.78% FillPatchIterator::Initialize 41 0.1677 0.178 0.1967 5.75% check_for_negative_density() 10 0.05455 0.1094 0.189 5.52% Castro::construct_new_gravity() 10 0.1825 0.1832 0.1846 5.40% Castro::initialize_do_advance() 10 0.1553 0.162 0.1662 4.86% Amr::init() 1 0.1624 0.1633 0.1638 4.79% FillPatchIterator::FillFromLevel0() 41 0.12 0.1351 0.1619 4.73% FillPatchSingleLevel 41 0.1199 0.135 0.1618 4.73% Amr::initialInit() 1 0.1476 0.1484 0.149 4.36% FabArray::ParallelCopy() 41 0.0855 0.1039 0.1348 3.94% Castro::clean_state() 62 0.1103 0.1159 0.1244 3.63% Amr::InitializeInit() 1 0.05599 0.09079 0.1216 3.55% Amr::defBaseLevel() 1 0.05598 0.09079 0.1216 3.55% Castro::expand_state() 10 0.1013 0.1088 0.1178 3.44% Castro::do_old_sources() 10 0.1048 0.111 0.1174 3.43% Castro::initData() 1 0.03845 0.07308 0.1038 3.03% Castro::estTimeStep() 21 0.02457 0.06128 0.1014 2.96% FabArray::ParallelCopy_finish() 41 0.0414 0.06282 0.09986 2.92% Amr::FinalizeInit() 1 0.02734 0.05764 0.09236 2.70% amrex::Copy() 193 0.06174 0.07893 0.08758 2.56% Castro::initialize_advance() 10 0.05186 0.06831 0.07427 2.17% Castro::computeTemp() 63 0.06108 0.06569 0.07378 2.16% FabArray::setVal() 143 0.05351 0.06526 0.07141 2.09% Castro::do_new_sources() 10 0.05854 0.06284 0.06841 2.00% Castro::computeInitialDt() 2 0.00229 0.03259 0.0678 1.98% Castro::reset_internal_energy(MultiFab) 63 0.04373 0.04676 0.04987 1.46% Castro::reset_internal_energy(Fab) 1008 0.04347 0.04649 0.04959 1.45% FabArray::ParallelCopy_nowait() 41 0.03488 0.04097 0.04796 1.40% Castro::normalize_species() 62 0.04425 0.04494 0.04623 1.35% StateDataPhysBCFunct::() 41 0.02686 0.03101 0.03433 1.00% StateData::FillBoundary(geom) 41 0.02676 0.03089 0.03421 1.00% Castro::construct_new_source() 50 0.02821 0.03045 0.03282 0.96% Gravity::interpolate_monopole_grav() 21 0.02621 0.02673 0.02737 0.80% Castro::construct_new_gravity_source() 10 0.02282 0.02453 0.02668 0.78% Castro::post_init() 1 0.02362 0.0245 0.02476 0.72% Castro::finalize_do_advance() 10 0.01431 0.0203 0.02454 0.72% Amr::writePlotFile() 2 0.02256 0.02269 0.02316 0.68% Castro::post_timestep() 10 0.01484 0.01573 0.01669 0.49% VisMF::Write(FabArray) 2 0.009346 0.009998 0.01351 0.39% Castro::apply_source_to_state() 20 0.01073 0.01235 0.01337 0.39% FabArray::Saxpy() 20 0.01068 0.0123 0.01332 0.39% FabArray::setDomainBndry() 41 0.007588 0.01026 0.01283 0.37% Castro::Castro() 1 0.01065 0.01101 0.01204 0.35% Castro::check_for_nan() 20 0.009774 0.01051 0.0116 0.34% MultiFab::contains_nan() 20 0.009745 0.01048 0.01157 0.34% Castro::construct_old_source() 50 0.007092 0.009428 0.01012 0.30% Castro::construct_old_gravity_source() 10 0.007045 0.00936 0.01004 0.29% Castro::computeNewDt() 9 0.009557 0.009596 0.009624 0.28% Castro::initMFs() 1 0.006444 0.007065 0.008455 0.25% Castro::enforce_min_density() 62 0.005703 0.006014 0.0063 0.18% Other 203 0.01937 0.02444 0.02831 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 28 B 33 B 41 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8659 KiB 8669 KiB 8672 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6789 KiB 6794 KiB 6797 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7130 KiB 7139 KiB 7142 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4582 KiB 4591 KiB 4609 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 217 KiB 229 KiB 242 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2815 KiB 2819 KiB 2820 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 226 KiB 232 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 37 KiB 44 KiB 60 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 76 KiB 77 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 67 KiB 69 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.11-47-gc4fcda1fb2ea) finalized