Initializing AMReX (25.12-5-g507c73f5c724)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.12-5-g507c73f5c724) initialized Starting run at 06:32:12 UTC on 2025-12-04. Successfully read inputs file ... Castro git describe: 25.12 AMReX git describe: 25.12-5-g507c73f5c Microphysics git describe: 25.12 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.016186688 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.3522259 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.337920776 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.327562951 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.325882385 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.390864454 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.309155548 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.302169454 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.304315418 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.304375543 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.30390989 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007782301 seconds Ending run at 06:32:16 UTC on 2025-12-04. Run time = 3.442159402 Run time without initialization = 3.271308028 Average number of zones advanced per microsecond: 0.801 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.4406 ... 3.4413 ... 3.4423 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2280 2.2747 2.3266 67.59% Gravity::make_radial_gravity() 21 0.3058 0.3138 0.3217 9.35% check_for_negative_density() 10 0.03249 0.08868 0.1404 4.08% Castro::estTimeStep() 21 0.02581 0.06172 0.1032 3.00% Castro::initData() 1 0.03448 0.07147 0.1028 2.99% amrex::Copy() 193 0.08136 0.08558 0.09741 2.83% FabArray::setVal() 143 0.06783 0.07182 0.07857 2.28% FabArray::ParallelCopy_finish() 41 0.04114 0.05825 0.06414 1.86% Castro::reset_internal_energy(Fab) 1008 0.04559 0.04721 0.0493 1.43% Castro::normalize_species() 62 0.04405 0.04491 0.04596 1.34% FabArray::ParallelCopy_nowait() 41 0.03792 0.04122 0.0428 1.24% FillPatchIterator::Initialize 41 0.02954 0.03502 0.03799 1.10% StateData::FillBoundary(geom) 41 0.02822 0.03173 0.03464 1.01% Gravity::interpolate_monopole_grav() 21 0.02653 0.02749 0.02936 0.85% Castro::construct_new_gravity_source() 10 0.02298 0.02394 0.02563 0.74% MultiFab::contains_nan() 20 0.01005 0.01196 0.01998 0.58% Castro::computeTemp() 63 0.01803 0.01832 0.01891 0.55% Castro::initialize_do_advance() 10 0.01674 0.01801 0.0187 0.54% Castro::initialize_advance() 10 0.01055 0.0126 0.0152 0.44% FabArray::Saxpy() 20 0.01154 0.0126 0.01357 0.39% FabArray::setDomainBndry() 41 0.008271 0.01142 0.01324 0.38% VisMF::Write(FabArray) 2 0.009229 0.009968 0.01299 0.38% Amr::writePlotFile() 2 0.008137 0.01093 0.01185 0.34% Castro::construct_old_gravity_source() 10 0.008671 0.009361 0.009847 0.29% Castro::initMFs() 1 0.006376 0.007076 0.007714 0.22% Castro::enforce_min_density() 62 0.005839 0.006123 0.006442 0.19% Castro::construct_new_source() 50 0.006061 0.006217 0.00642 0.19% main() 1 0.004154 0.004307 0.004511 0.13% Gravity::get_new_grav_vector() 11 0.003081 0.003609 0.004013 0.12% Gravity::get_old_grav_vector() 10 0.001711 0.002179 0.00279 0.08% Amr::coarseTimeStep() 10 0.000918 0.001785 0.002409 0.07% Castro::finalize_do_advance() 10 0.001068 0.001349 0.001702 0.05% AmrLevel::FillPatch() 41 0.0008585 0.001 0.001175 0.03% Amr::timeStep() 10 0.0001382 0.0001725 0.0003545 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002636 0.0002734 0.0002901 0.01% Castro::do_advance_ctu() 10 0.0001524 0.0001792 0.0002 0.01% Castro::clean_state() 62 0.0001412 0.0001512 0.0001585 0.00% StateDataPhysBCFunct::() 41 0.000102 0.0001163 0.0001316 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001058 0.0001114 0.0001231 0.00% Amr::FinalizeInit() 1 3.641e-06 1.637e-05 0.0001022 0.00% FabArray::ParallelCopy() 41 8.635e-05 9.116e-05 9.924e-05 0.00% Castro::do_old_sources() 10 7.151e-05 8.353e-05 9.357e-05 0.00% Castro::Castro() 1 5.285e-05 6.606e-05 8.666e-05 0.00% Castro::construct_old_source() 50 5.412e-05 6.569e-05 8.524e-05 0.00% FillPatchSingleLevel 41 6.6e-05 7.119e-05 7.76e-05 0.00% Castro::do_new_sources() 10 5.344e-05 6.395e-05 7.465e-05 0.00% Castro::advance() 10 3.663e-05 4.505e-05 6.044e-05 0.00% Castro::apply_source_to_state() 20 4.05e-05 4.833e-05 5.864e-05 0.00% Castro::subcycle_advance_ctu() 10 4.094e-05 5.01e-05 5.763e-05 0.00% Castro::check_for_nan() 20 2.218e-05 2.859e-05 5.416e-05 0.00% Castro::construct_old_gravity() 10 3.445e-05 4.124e-05 5.198e-05 0.00% Amr::defBaseLevel() 1 3.557e-05 4.139e-05 4.752e-05 0.00% Castro::construct_new_gravity() 10 2.713e-05 3.371e-05 3.984e-05 0.00% Castro::expand_state() 10 2.013e-05 2.416e-05 3.167e-05 0.00% Castro::post_init() 1 1.498e-05 1.692e-05 2.106e-05 0.00% Castro::post_timestep() 10 1.363e-05 1.504e-05 1.671e-05 0.00% Castro::computeNewDt() 9 8.797e-06 9.619e-06 1.059e-05 0.00% Amr::InitializeInit() 1 2.85e-06 3.939e-06 8.859e-06 0.00% Castro::computeInitialDt() 2 5.188e-06 6.644e-06 8.81e-06 0.00% Amr::init() 1 1.831e-06 2.828e-06 8.47e-06 0.00% Amr::initialInit() 1 2.912e-06 4.898e-06 5.66e-06 0.00% Other 203 0.01023 0.01298 0.01554 0.45% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.441 3.441 3.442 100.00% Amr::coarseTimeStep() 10 3.259 3.259 3.259 94.68% Amr::timeStep() 10 3.246 3.246 3.247 94.33% Castro::advance() 10 3.23 3.23 3.231 93.86% Castro::subcycle_advance_ctu() 10 3.149 3.153 3.155 91.66% Castro::do_advance_ctu() 10 3.149 3.153 3.155 91.66% Castro::construct_ctu_hydro_source() 10 2.38 2.384 2.389 69.40% Gravity::make_radial_gravity() 21 0.3223 0.3306 0.3371 9.79% AmrLevel::FillPatch() 41 0.1916 0.2116 0.2244 6.52% Gravity::get_new_grav_vector() 11 0.2156 0.217 0.2185 6.35% Castro::construct_old_gravity() 10 0.197 0.2028 0.2073 6.02% Gravity::get_old_grav_vector() 10 0.1962 0.2021 0.2066 6.00% Castro::construct_new_gravity() 10 0.1908 0.1915 0.1923 5.59% FillPatchIterator::Initialize 41 0.1627 0.1781 0.189 5.49% Castro::initialize_do_advance() 10 0.1627 0.1694 0.1727 5.02% Amr::init() 1 0.1692 0.1697 0.1705 4.95% Amr::initialInit() 1 0.153 0.1538 0.1546 4.49% check_for_negative_density() 10 0.03249 0.08868 0.1404 4.08% FillPatchIterator::FillFromLevel0() 41 0.1191 0.1317 0.1401 4.07% FillPatchSingleLevel 41 0.1189 0.1316 0.14 4.07% Amr::InitializeInit() 1 0.05497 0.09266 0.1241 3.60% Amr::defBaseLevel() 1 0.05496 0.09266 0.1241 3.60% Castro::clean_state() 62 0.113 0.1161 0.119 3.46% Castro::expand_state() 10 0.1052 0.1125 0.1184 3.44% Castro::do_old_sources() 10 0.09214 0.1021 0.1078 3.13% Castro::initData() 1 0.03846 0.07541 0.1071 3.11% FabArray::ParallelCopy() 41 0.08411 0.09966 0.1064 3.09% Castro::estTimeStep() 21 0.02581 0.06172 0.1032 3.00% Amr::FinalizeInit() 1 0.02984 0.06113 0.09963 2.89% amrex::Copy() 193 0.08136 0.08558 0.09741 2.83% FabArray::setVal() 143 0.06783 0.07182 0.07857 2.28% Castro::initialize_advance() 10 0.07189 0.07394 0.07761 2.25% Castro::computeInitialDt() 2 0.002454 0.0341 0.07219 2.10% Castro::do_new_sources() 10 0.06068 0.06404 0.06903 2.01% Castro::computeTemp() 63 0.0639 0.0658 0.06849 1.99% FabArray::ParallelCopy_finish() 41 0.04114 0.05825 0.06414 1.86% Castro::reset_internal_energy(MultiFab) 63 0.04586 0.04748 0.04959 1.44% Castro::reset_internal_energy(Fab) 1008 0.04559 0.04721 0.0493 1.43% Castro::normalize_species() 62 0.04405 0.04491 0.04596 1.34% FabArray::ParallelCopy_nowait() 41 0.03804 0.04132 0.04289 1.25% StateDataPhysBCFunct::() 41 0.02835 0.03185 0.03476 1.01% StateData::FillBoundary(geom) 41 0.02822 0.03173 0.03464 1.01% Castro::construct_new_source() 50 0.02904 0.03016 0.032 0.93% Gravity::interpolate_monopole_grav() 21 0.02653 0.02749 0.02936 0.85% Castro::post_init() 1 0.0261 0.02667 0.02714 0.79% Castro::construct_new_gravity_source() 10 0.02298 0.02394 0.02563 0.74% Amr::writePlotFile() 2 0.02326 0.02379 0.02423 0.70% Castro::finalize_do_advance() 10 0.01324 0.01916 0.02334 0.68% Castro::check_for_nan() 20 0.01007 0.01199 0.02003 0.58% MultiFab::contains_nan() 20 0.01005 0.01196 0.01998 0.58% Castro::post_timestep() 10 0.0152 0.0157 0.01641 0.48% Castro::apply_source_to_state() 20 0.01158 0.01265 0.01362 0.40% FabArray::Saxpy() 20 0.01154 0.0126 0.01357 0.39% FabArray::setDomainBndry() 41 0.008271 0.01142 0.01324 0.38% VisMF::Write(FabArray) 2 0.009229 0.009968 0.01299 0.38% Castro::Castro() 1 0.00944 0.01077 0.01179 0.34% Castro::construct_old_source() 50 0.008728 0.009427 0.009914 0.29% Castro::construct_old_gravity_source() 10 0.008671 0.009361 0.009847 0.29% Castro::computeNewDt() 9 0.009816 0.009825 0.009836 0.29% Castro::initMFs() 1 0.006376 0.007076 0.007714 0.22% Castro::enforce_min_density() 62 0.005839 0.006123 0.006442 0.19% Other 203 0.02022 0.02438 0.02856 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 32 B 34 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8662 KiB 8670 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6775 KiB 6782 KiB 6784 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7132 KiB 7141 KiB 7143 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4572 KiB 4577 KiB 4580 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 209 KiB 227 KiB 240 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2811 KiB 2815 KiB 2816 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 238 KiB 244 KiB 249 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 38 KiB 42 KiB 44 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2027 KiB 2029 KiB 2030 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 80 KiB 81 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 73 KiB 75 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.12-5-g507c73f5c724) finalized