Initializing AMReX (25.12-5-g507c73f5c724)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.12-5-g507c73f5c724) initialized Starting run at 06:17:39 UTC on 2025-12-05. Successfully read inputs file ... Castro git describe: 25.12 AMReX git describe: 25.12-5-g507c73f5c Microphysics git describe: 25.12 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014565419 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.350160995 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.348590239 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.319498997 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.317465802 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.371111608 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.30791148 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.299451623 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.314869641 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.303793137 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.301412946 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007648408 seconds Ending run at 06:17:43 UTC on 2025-12-05. Run time = 3.437207853 Run time without initialization = 3.246698375 Average number of zones advanced per microsecond: 0.807 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4327 ... 3.4358 ... 3.4375 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2295 2.2703 2.3243 67.62% Gravity::make_radial_gravity() 21 0.288 0.3011 0.3155 9.18% check_for_negative_density() 10 0.0438 0.1012 0.1426 4.15% Castro::estTimeStep() 21 0.02492 0.08192 0.1212 3.53% Castro::initData() 1 0.03425 0.07104 0.1181 3.43% amrex::Copy() 193 0.06601 0.07947 0.09397 2.73% FabArray::ParallelCopy_finish() 41 0.03613 0.06146 0.09193 2.67% FabArray::setVal() 143 0.05588 0.06595 0.07299 2.12% Castro::normalize_species() 62 0.04453 0.04567 0.05052 1.47% Castro::reset_internal_energy(Fab) 1008 0.04572 0.04702 0.0486 1.41% FabArray::ParallelCopy_nowait() 41 0.03389 0.03925 0.04113 1.20% StateData::FillBoundary(geom) 41 0.02768 0.03126 0.03561 1.04% FillPatchIterator::Initialize 41 0.02788 0.03211 0.03501 1.02% Gravity::interpolate_monopole_grav() 21 0.02664 0.02735 0.02946 0.86% Castro::construct_new_gravity_source() 10 0.02216 0.02347 0.02525 0.73% Castro::computeTemp() 63 0.01764 0.01814 0.01863 0.54% Castro::initialize_do_advance() 10 0.01158 0.01616 0.01772 0.52% Castro::initialize_advance() 10 0.005336 0.01074 0.01396 0.41% FabArray::Saxpy() 20 0.01038 0.01181 0.01319 0.38% Amr::writePlotFile() 2 0.007449 0.01033 0.01284 0.37% FabArray::setDomainBndry() 41 0.007515 0.01034 0.01261 0.37% VisMF::Write(FabArray) 2 0.008438 0.009654 0.01209 0.35% MultiFab::contains_nan() 20 0.009603 0.01041 0.01142 0.33% Castro::initMFs() 1 0.006504 0.007782 0.01066 0.31% Castro::construct_old_gravity_source() 10 0.006168 0.008471 0.00904 0.26% StateData::define() 4 0.005327 0.0065 0.008435 0.25% Castro::construct_new_source() 50 0.005742 0.006095 0.006281 0.18% main() 1 0.004038 0.004144 0.004269 0.12% Gravity::get_new_grav_vector() 11 0.002897 0.003524 0.003838 0.11% Gravity::get_old_grav_vector() 10 0.001622 0.002052 0.002735 0.08% Amr::coarseTimeStep() 10 0.0006872 0.001721 0.002422 0.07% Castro::finalize_do_advance() 10 0.0005915 0.001189 0.001308 0.04% AmrLevel::FillPatch() 41 0.000757 0.001058 0.001231 0.04% Amr::timeStep() 10 0.0001426 0.0001892 0.0003731 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002564 0.0002764 0.0003059 0.01% Castro::do_advance_ctu() 10 0.0001532 0.0001766 0.0002054 0.01% Castro::clean_state() 62 0.0001428 0.0001546 0.0001678 0.00% StateDataPhysBCFunct::() 41 0.0001067 0.0001224 0.0001542 0.00% FillPatchIterator::FillFromLevel0() 41 9.82e-05 0.0001053 0.0001089 0.00% FabArray::ParallelCopy() 41 7.821e-05 9.161e-05 9.929e-05 0.00% Castro::do_old_sources() 10 6.493e-05 8.268e-05 9.54e-05 0.00% Amr::FinalizeInit() 1 3.289e-06 1.439e-05 8.384e-05 0.00% Castro::Castro() 1 4.795e-05 6.64e-05 8.11e-05 0.00% Castro::do_new_sources() 10 5.22e-05 6.33e-05 8.027e-05 0.00% FillPatchSingleLevel 41 6.255e-05 6.754e-05 7.837e-05 0.00% Castro::construct_old_source() 50 4.207e-05 6.154e-05 7.203e-05 0.00% Castro::advance() 10 3.992e-05 4.861e-05 6.085e-05 0.00% Castro::apply_source_to_state() 20 3.763e-05 4.923e-05 5.63e-05 0.00% Amr::defBaseLevel() 1 3.764e-05 4.394e-05 5.389e-05 0.00% Castro::subcycle_advance_ctu() 10 4.116e-05 4.796e-05 5.236e-05 0.00% Castro::construct_old_gravity() 10 3.043e-05 3.847e-05 4.988e-05 0.00% Castro::construct_new_gravity() 10 3.125e-05 3.762e-05 4.546e-05 0.00% Castro::check_for_nan() 20 2.225e-05 2.4e-05 2.66e-05 0.00% Castro::expand_state() 10 1.829e-05 2.206e-05 2.604e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.412e-06 1.388e-05 2.28e-05 0.00% Castro::post_timestep() 10 1.351e-05 1.734e-05 2.231e-05 0.00% Castro::post_init() 1 1.366e-05 1.587e-05 2.009e-05 0.00% Castro::computeNewDt() 9 8.108e-06 9.512e-06 1.125e-05 0.00% Amr::InitializeInit() 1 2.803e-06 3.961e-06 8.309e-06 0.00% Castro::computeInitialDt() 2 5.456e-06 6.787e-06 7.697e-06 0.00% Amr::init() 1 1.865e-06 4.542e-06 6.817e-06 0.00% Amr::initialInit() 1 1.41e-06 2.369e-06 5.498e-06 0.00% Other 260 0.0104 0.01533 0.01857 0.54% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.433 3.436 3.437 100.00% Amr::coarseTimeStep() 10 3.235 3.235 3.235 94.10% Amr::timeStep() 10 3.222 3.222 3.223 93.77% Castro::advance() 10 3.206 3.206 3.207 93.29% Castro::subcycle_advance_ctu() 10 3.131 3.135 3.149 91.62% Castro::do_advance_ctu() 10 3.13 3.135 3.149 91.62% Castro::construct_ctu_hydro_source() 10 2.383 2.392 2.398 69.76% Gravity::make_radial_gravity() 21 0.304 0.3167 0.3283 9.55% AmrLevel::FillPatch() 41 0.1893 0.2062 0.2256 6.56% Castro::construct_old_gravity() 10 0.1857 0.1984 0.2082 6.06% Gravity::get_old_grav_vector() 10 0.185 0.1977 0.2075 6.04% Gravity::get_new_grav_vector() 11 0.203 0.2038 0.2049 5.96% FillPatchIterator::Initialize 41 0.1591 0.1749 0.1916 5.57% Amr::init() 1 0.1857 0.1888 0.1904 5.54% Castro::construct_new_gravity() 10 0.1807 0.1816 0.1822 5.30% Amr::initialInit() 1 0.1709 0.1739 0.1755 5.11% Castro::initialize_do_advance() 10 0.1508 0.1618 0.1722 5.01% FillPatchIterator::FillFromLevel0() 41 0.1132 0.1325 0.1562 4.54% FillPatchSingleLevel 41 0.1131 0.1324 0.1561 4.54% Amr::InitializeInit() 1 0.05839 0.09564 0.1446 4.21% Amr::defBaseLevel() 1 0.05838 0.09564 0.1446 4.21% check_for_negative_density() 10 0.0438 0.1012 0.1426 4.15% FabArray::ParallelCopy() 41 0.0773 0.1009 0.126 3.67% Castro::clean_state() 62 0.1138 0.1164 0.1226 3.57% Castro::initData() 1 0.03816 0.07465 0.1213 3.53% Castro::estTimeStep() 21 0.02492 0.08192 0.1212 3.53% Castro::expand_state() 10 0.0976 0.1081 0.1188 3.45% Amr::FinalizeInit() 1 0.02637 0.07825 0.1171 3.41% Castro::do_old_sources() 10 0.09329 0.1013 0.1131 3.29% amrex::Copy() 193 0.06601 0.07947 0.09397 2.73% Castro::computeInitialDt() 2 0.002298 0.05431 0.09307 2.71% FabArray::ParallelCopy_finish() 41 0.03613 0.06146 0.09193 2.67% FabArray::setVal() 143 0.05588 0.06595 0.07299 2.12% Castro::initialize_advance() 10 0.0531 0.0682 0.07262 2.11% Castro::computeTemp() 63 0.06362 0.06544 0.06729 1.96% Castro::do_new_sources() 10 0.05734 0.06226 0.06715 1.95% Castro::normalize_species() 62 0.04453 0.04567 0.05052 1.47% Castro::reset_internal_energy(MultiFab) 63 0.04597 0.0473 0.04891 1.42% Castro::reset_internal_energy(Fab) 1008 0.04572 0.04702 0.0486 1.41% FabArray::ParallelCopy_nowait() 41 0.03399 0.03935 0.04121 1.20% StateDataPhysBCFunct::() 41 0.02784 0.03139 0.03574 1.04% StateData::FillBoundary(geom) 41 0.02768 0.03126 0.03561 1.04% Castro::construct_new_source() 50 0.0279 0.02956 0.03148 0.92% Gravity::interpolate_monopole_grav() 21 0.02664 0.02735 0.02946 0.86% Castro::construct_new_gravity_source() 10 0.02216 0.02347 0.02525 0.73% Castro::post_init() 1 0.02298 0.0235 0.02372 0.69% Castro::finalize_do_advance() 10 0.01441 0.01929 0.02365 0.69% Amr::writePlotFile() 2 0.02248 0.02262 0.02306 0.67% Castro::post_timestep() 10 0.0155 0.01593 0.01657 0.48% Castro::Castro() 1 0.009874 0.01137 0.01479 0.43% Castro::apply_source_to_state() 20 0.01042 0.01186 0.01324 0.39% FabArray::Saxpy() 20 0.01038 0.01181 0.01319 0.38% FabArray::setDomainBndry() 41 0.007515 0.01034 0.01261 0.37% VisMF::Write(FabArray) 2 0.008438 0.009654 0.01209 0.35% Castro::check_for_nan() 20 0.009626 0.01043 0.01144 0.33% MultiFab::contains_nan() 20 0.009603 0.01041 0.01142 0.33% Castro::initMFs() 1 0.006504 0.007782 0.01066 0.31% Castro::computeNewDt() 9 0.009507 0.009527 0.009536 0.28% Castro::construct_old_source() 50 0.00621 0.008533 0.00911 0.27% Castro::construct_old_gravity_source() 10 0.006168 0.008471 0.00904 0.26% AmrLevel::AmrLevel(dm) 1 0.005339 0.006514 0.008454 0.25% StateData::define() 4 0.005327 0.0065 0.008435 0.25% Other 260 0.01491 0.02327 0.0285 0.83% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: --------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 8 29 B 34 B 42 B 8192 KiB 8192 KiB 8192 KiB --------------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: --------------------------------------------------------------------------------------------------------------------------- Name Nalloc Nfree AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 48 8652 KiB 8662 KiB 8664 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 32 6734 KiB 6744 KiB 6750 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 32 7125 KiB 7135 KiB 7141 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 80 4549 KiB 4558 KiB 4578 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 328 204 KiB 221 KiB 238 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 13 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 80 2795 KiB 2799 KiB 2802 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 168 225 KiB 234 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 656 34 KiB 42 KiB 56 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 32 2025 KiB 2027 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 88 75 KiB 76 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 80 69 KiB 73 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB --------------------------------------------------------------------------------------------------------------------------- AMReX (25.12-5-g507c73f5c724) finalized