Initializing AMReX (25.12-7-g68fdcf40b6b1)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.12-7-g68fdcf40b6b1) initialized Starting run at 06:33:08 UTC on 2025-12-08. Successfully read inputs file ... Castro git describe: 25.12 AMReX git describe: 25.12-7-g68fdcf40b Microphysics git describe: 25.12 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014540114 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.34570982 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.346505558 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.315886859 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.317198704 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.38056154 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.308972693 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.301440623 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.301138496 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.30528602 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.302606854 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007618742 seconds Ending run at 06:33:12 UTC on 2025-12-08. Run time = 3.417483052 Run time without initialization = 3.238442558 Average number of zones advanced per microsecond: 0.809 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4115 ... 3.4154 ... 3.4175 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2086 2.2678 2.3090 67.56% Gravity::make_radial_gravity() 21 0.2745 0.2829 0.2939 8.60% check_for_negative_density() 10 0.06076 0.1052 0.1675 4.90% Castro::estTimeStep() 21 0.02448 0.07098 0.1106 3.24% FabArray::ParallelCopy_finish() 41 0.04057 0.06582 0.109 3.19% Castro::initData() 1 0.03371 0.06976 0.1065 3.12% amrex::Copy() 193 0.06419 0.07922 0.08819 2.58% FabArray::setVal() 143 0.05412 0.06544 0.07056 2.06% Castro::normalize_species() 62 0.04416 0.04546 0.04947 1.45% Castro::reset_internal_energy(Fab) 1008 0.04579 0.04694 0.04812 1.41% FabArray::ParallelCopy_nowait() 41 0.03514 0.03979 0.04204 1.23% FillPatchIterator::Initialize 41 0.02773 0.03309 0.03751 1.10% StateData::FillBoundary(geom) 41 0.02837 0.03045 0.03312 0.97% Gravity::interpolate_monopole_grav() 21 0.02548 0.02633 0.03108 0.91% Castro::construct_new_gravity_source() 10 0.02244 0.02394 0.02628 0.77% FabArray::Saxpy() 20 0.01038 0.01401 0.02286 0.67% Castro::construct_old_gravity_source() 10 0.006847 0.01063 0.02066 0.60% Castro::computeTemp() 63 0.01768 0.01803 0.01827 0.53% Castro::initialize_do_advance() 10 0.01175 0.01628 0.01758 0.51% Castro::initialize_advance() 10 0.005313 0.01075 0.01382 0.40% FabArray::setDomainBndry() 41 0.007851 0.01083 0.01323 0.39% Amr::writePlotFile() 2 0.007169 0.01017 0.01246 0.36% VisMF::Write(FabArray) 2 0.008663 0.009668 0.01224 0.36% MultiFab::contains_nan() 20 0.009495 0.01036 0.01131 0.33% Castro::initMFs() 1 0.006387 0.007702 0.01055 0.31% StateData::define() 4 0.005255 0.006227 0.008562 0.25% Castro::construct_new_source() 50 0.005613 0.005969 0.00628 0.18% main() 1 0.003935 0.004235 0.004723 0.14% Gravity::get_new_grav_vector() 11 0.00282 0.003585 0.003885 0.11% Gravity::get_old_grav_vector() 10 0.001669 0.002066 0.002552 0.07% Amr::coarseTimeStep() 10 0.001311 0.001651 0.002157 0.06% Castro::finalize_do_advance() 10 0.0005943 0.001043 0.001287 0.04% AmrLevel::FillPatch() 41 0.0007655 0.001069 0.001212 0.04% Amr::timeStep() 10 0.0001345 0.0001845 0.0004341 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002469 0.0002625 0.0003033 0.01% Castro::clean_state() 62 0.0001481 0.0001682 0.0002144 0.01% Castro::do_advance_ctu() 10 0.0001561 0.0001777 0.0002026 0.01% StateDataPhysBCFunct::() 41 9.231e-05 0.0001226 0.0001477 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001011 0.0001115 0.0001238 0.00% Castro::do_old_sources() 10 8.359e-05 0.0001005 0.0001161 0.00% FabArray::ParallelCopy() 41 8.681e-05 9.537e-05 0.0001079 0.00% Castro::construct_old_source() 50 5.507e-05 7.784e-05 0.0001053 0.00% Castro::Castro() 1 5.238e-05 6.924e-05 9.04e-05 0.00% FillPatchSingleLevel 41 6.351e-05 7.282e-05 8.676e-05 0.00% Castro::apply_source_to_state() 20 4.433e-05 5.848e-05 8.561e-05 0.00% Amr::FinalizeInit() 1 3.72e-06 1.436e-05 8.369e-05 0.00% Castro::do_new_sources() 10 5.137e-05 6.188e-05 6.819e-05 0.00% Castro::subcycle_advance_ctu() 10 4.335e-05 4.898e-05 5.543e-05 0.00% Amr::defBaseLevel() 1 3.145e-05 4.196e-05 5.271e-05 0.00% Castro::advance() 10 4.039e-05 4.268e-05 4.651e-05 0.00% Castro::construct_old_gravity() 10 3.243e-05 3.778e-05 4.399e-05 0.00% Castro::construct_new_gravity() 10 2.733e-05 3.51e-05 4.334e-05 0.00% Castro::expand_state() 10 1.746e-05 2.379e-05 2.828e-05 0.00% Castro::check_for_nan() 20 2.019e-05 2.354e-05 2.616e-05 0.00% Castro::post_init() 1 1.524e-05 1.75e-05 2.402e-05 0.00% Castro::post_timestep() 10 1.592e-05 1.873e-05 2.348e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.902e-06 1.272e-05 2.219e-05 0.00% Castro::computeNewDt() 9 8.487e-06 9.278e-06 9.988e-06 0.00% Amr::InitializeInit() 1 2.463e-06 3.975e-06 9.94e-06 0.00% Castro::computeInitialDt() 2 4.929e-06 6.17e-06 6.804e-06 0.00% Amr::init() 1 1.661e-06 4.391e-06 6.461e-06 0.00% Amr::initialInit() 1 1.569e-06 2.48e-06 4.838e-06 0.00% Other 260 0.01032 0.01608 0.01987 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.411 3.415 3.417 100.00% Amr::coarseTimeStep() 10 3.226 3.226 3.226 94.40% Amr::timeStep() 10 3.213 3.214 3.214 94.05% Castro::advance() 10 3.198 3.198 3.198 93.59% Castro::subcycle_advance_ctu() 10 3.122 3.126 3.141 91.91% Castro::do_advance_ctu() 10 3.122 3.126 3.141 91.91% Castro::construct_ctu_hydro_source() 10 2.387 2.393 2.398 70.16% Gravity::make_radial_gravity() 21 0.2915 0.2992 0.307 8.98% AmrLevel::FillPatch() 41 0.197 0.2131 0.236 6.91% FillPatchIterator::Initialize 41 0.1642 0.1805 0.2107 6.17% Gravity::get_new_grav_vector() 11 0.2004 0.2016 0.2032 5.94% Castro::construct_old_gravity() 10 0.1769 0.1825 0.1887 5.52% Gravity::get_old_grav_vector() 10 0.1762 0.1818 0.188 5.50% Castro::construct_new_gravity() 10 0.1788 0.1796 0.1809 5.29% Amr::init() 1 0.1733 0.177 0.1789 5.23% FillPatchIterator::FillFromLevel0() 41 0.1156 0.1366 0.1752 5.13% FillPatchSingleLevel 41 0.1154 0.1364 0.175 5.12% Castro::initialize_do_advance() 10 0.1547 0.1617 0.1699 4.97% check_for_negative_density() 10 0.06076 0.1052 0.1675 4.90% Amr::initialInit() 1 0.1586 0.1623 0.1641 4.80% FabArray::ParallelCopy() 41 0.08214 0.1058 0.1443 4.22% Amr::InitializeInit() 1 0.05762 0.09496 0.1325 3.88% Amr::defBaseLevel() 1 0.05762 0.09496 0.1325 3.88% Castro::expand_state() 10 0.1012 0.1089 0.1227 3.59% Castro::clean_state() 62 0.1136 0.1159 0.1191 3.49% Castro::do_old_sources() 10 0.1081 0.1117 0.1161 3.40% Castro::estTimeStep() 21 0.02448 0.07098 0.1106 3.24% Castro::initData() 1 0.03741 0.07345 0.11 3.22% FabArray::ParallelCopy_finish() 41 0.04057 0.06582 0.109 3.19% Amr::FinalizeInit() 1 0.02603 0.06733 0.1054 3.08% amrex::Copy() 193 0.06419 0.07922 0.08819 2.58% Castro::computeInitialDt() 2 0.002312 0.04369 0.08168 2.39% Castro::initialize_advance() 10 0.05313 0.06818 0.07252 2.12% FabArray::setVal() 143 0.05412 0.06544 0.07056 2.06% Castro::do_new_sources() 10 0.05926 0.06248 0.06745 1.97% Castro::computeTemp() 63 0.06407 0.06523 0.06664 1.95% Castro::normalize_species() 62 0.04416 0.04546 0.04947 1.45% Castro::reset_internal_energy(MultiFab) 63 0.04604 0.0472 0.0484 1.42% Castro::reset_internal_energy(Fab) 1008 0.04579 0.04694 0.04812 1.41% FabArray::ParallelCopy_nowait() 41 0.03525 0.03989 0.04212 1.23% StateDataPhysBCFunct::() 41 0.0285 0.03057 0.03324 0.97% StateData::FillBoundary(geom) 41 0.02837 0.03045 0.03312 0.97% Castro::construct_new_source() 50 0.0283 0.02991 0.0324 0.95% Gravity::interpolate_monopole_grav() 21 0.02548 0.02633 0.03108 0.91% Castro::construct_new_gravity_source() 10 0.02244 0.02394 0.02628 0.77% Castro::post_init() 1 0.02283 0.02322 0.02339 0.68% Castro::apply_source_to_state() 20 0.01043 0.01407 0.02295 0.67% Amr::writePlotFile() 2 0.02238 0.02247 0.02289 0.67% FabArray::Saxpy() 20 0.01038 0.01401 0.02286 0.67% Castro::finalize_do_advance() 10 0.01394 0.01897 0.02253 0.66% Castro::construct_old_source() 50 0.006902 0.0107 0.02076 0.61% Castro::construct_old_gravity_source() 10 0.006847 0.01063 0.02066 0.60% Castro::post_timestep() 10 0.0154 0.01581 0.01607 0.47% Castro::Castro() 1 0.01 0.01139 0.01457 0.43% FabArray::setDomainBndry() 41 0.007851 0.01083 0.01323 0.39% VisMF::Write(FabArray) 2 0.008663 0.009668 0.01224 0.36% Castro::check_for_nan() 20 0.00952 0.01038 0.01134 0.33% MultiFab::contains_nan() 20 0.009495 0.01036 0.01131 0.33% Castro::initMFs() 1 0.006387 0.007702 0.01055 0.31% Castro::computeNewDt() 9 0.009355 0.009385 0.009423 0.28% AmrLevel::AmrLevel(dm) 1 0.005265 0.00624 0.00858 0.25% StateData::define() 4 0.005255 0.006227 0.008562 0.25% Other 260 0.01495 0.02477 0.03062 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 3 B 3 B 4 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8630 KiB 8640 KiB 8647 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6743 KiB 6750 KiB 6753 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 7108 KiB 7117 KiB 7120 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 4556 KiB 4562 KiB 4585 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 210 KiB 228 KiB 256 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2798 KiB 2801 KiB 2803 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 217 KiB 222 KiB 228 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 35 KiB 44 KiB 63 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2020 KiB 2022 KiB 2024 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 75 KiB 75 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 66 KiB 68 KiB 70 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (25.12-7-g68fdcf40b6b1) finalized