Initializing AMReX (25.12-9-gf4f3ea82e8bb)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.12-9-gf4f3ea82e8bb) initialized Starting run at 06:32:06 UTC on 2025-12-09. Successfully read inputs file ... Castro git describe: 25.12 AMReX git describe: 25.12-9-gf4f3ea82e Microphysics git describe: 25.12-1-g1bbc1607 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014653881 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.35556729 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.343616511 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.323341081 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.322046745 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.37424595 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.31089457 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.300326183 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.302954869 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.300251651 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.302538318 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007546459 seconds Ending run at 06:32:09 UTC on 2025-12-09. Run time = 3.413801046 Run time without initialization = 3.249399196 Average number of zones advanced per microsecond: 0.807 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4114 ... 3.4125 ... 3.4138 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2207 2.2726 2.3394 68.53% Gravity::make_radial_gravity() 21 0.2778 0.2876 0.3006 8.80% check_for_negative_density() 10 0.047 0.1192 0.1748 5.12% FabArray::ParallelCopy_finish() 41 0.0362 0.0545 0.1009 2.96% Castro::initData() 1 0.034 0.07074 0.09926 2.91% Castro::estTimeStep() 21 0.02728 0.05871 0.09857 2.89% amrex::Copy() 193 0.0636 0.07731 0.08726 2.56% FabArray::setVal() 143 0.05538 0.06728 0.0738 2.16% Castro::reset_internal_energy(Fab) 1008 0.04414 0.04633 0.04769 1.40% Castro::normalize_species() 62 0.04458 0.04495 0.0455 1.33% FabArray::ParallelCopy_nowait() 41 0.03518 0.0412 0.04548 1.33% FillPatchIterator::Initialize 41 0.02712 0.0351 0.04423 1.30% StateData::FillBoundary(geom) 41 0.02861 0.03064 0.03375 0.99% Castro::construct_new_gravity_source() 10 0.02233 0.02422 0.02646 0.78% Gravity::interpolate_monopole_grav() 21 0.02538 0.02565 0.02617 0.77% Castro::computeTemp() 63 0.01725 0.0179 0.01851 0.54% Castro::initialize_do_advance() 10 0.0117 0.01609 0.01749 0.51% Castro::initialize_advance() 10 0.005305 0.01074 0.01357 0.40% FabArray::Saxpy() 20 0.0104 0.01227 0.01344 0.39% FabArray::setDomainBndry() 41 0.007721 0.01111 0.01328 0.39% VisMF::Write(FabArray) 2 0.009079 0.00977 0.01227 0.36% Amr::writePlotFile() 2 0.007235 0.0102 0.01211 0.35% MultiFab::contains_nan() 20 0.009419 0.01059 0.01181 0.35% Castro::construct_old_gravity_source() 10 0.006714 0.009367 0.01049 0.31% Castro::initMFs() 1 0.006657 0.007183 0.007681 0.23% Castro::construct_new_source() 50 0.005526 0.005971 0.006238 0.18% main() 1 0.003647 0.004472 0.005422 0.16% Gravity::get_new_grav_vector() 11 0.002775 0.003486 0.003779 0.11% Amr::coarseTimeStep() 10 0.001112 0.001815 0.003062 0.09% Gravity::get_old_grav_vector() 10 0.00162 0.002087 0.002587 0.08% Castro::finalize_do_advance() 10 0.0006176 0.001178 0.001339 0.04% AmrLevel::FillPatch() 41 0.0007782 0.001147 0.001264 0.04% Amr::timeStep() 10 0.000137 0.0001964 0.0004674 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002554 0.0002702 0.0002805 0.01% Castro::do_advance_ctu() 10 0.0001436 0.0001786 0.0001972 0.01% Castro::clean_state() 62 0.0001396 0.0001558 0.0001839 0.01% StateDataPhysBCFunct::() 41 0.0001002 0.0001185 0.000135 0.00% FillPatchIterator::FillFromLevel0() 41 9.674e-05 0.0001132 0.000132 0.00% Castro::do_old_sources() 10 8.254e-05 9.959e-05 0.0001265 0.00% FabArray::ParallelCopy() 41 8.794e-05 9.349e-05 0.0001027 0.00% FillPatchSingleLevel 41 6.223e-05 7.884e-05 9.441e-05 0.00% Castro::Castro() 1 5.788e-05 7.487e-05 8.758e-05 0.00% Castro::construct_old_source() 50 5.084e-05 7.24e-05 8.614e-05 0.00% Amr::FinalizeInit() 1 3.724e-06 1.381e-05 7.16e-05 0.00% Castro::do_new_sources() 10 5.624e-05 6.355e-05 6.96e-05 0.00% Castro::subcycle_advance_ctu() 10 3.951e-05 4.761e-05 6.252e-05 0.00% Castro::apply_source_to_state() 20 4.229e-05 5.184e-05 5.76e-05 0.00% Castro::advance() 10 3.843e-05 4.354e-05 5.215e-05 0.00% Amr::defBaseLevel() 1 3.457e-05 4.188e-05 5.094e-05 0.00% Castro::construct_old_gravity() 10 3.575e-05 4.172e-05 4.768e-05 0.00% Castro::construct_new_gravity() 10 3.255e-05 3.825e-05 4.753e-05 0.00% Castro::check_for_nan() 20 2.166e-05 2.594e-05 3.895e-05 0.00% Castro::expand_state() 10 1.817e-05 2.342e-05 2.737e-05 0.00% Castro::post_timestep() 10 1.549e-05 1.782e-05 2.169e-05 0.00% Castro::post_init() 1 1.558e-05 1.689e-05 1.904e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.773e-06 1.189e-05 1.489e-05 0.00% Castro::computeNewDt() 9 8.782e-06 9.787e-06 1.195e-05 0.00% Amr::InitializeInit() 1 2.661e-06 4.228e-06 1.066e-05 0.00% Castro::computeInitialDt() 2 5.515e-06 6.927e-06 9.98e-06 0.00% Amr::init() 1 2.005e-06 4.302e-06 6.505e-06 0.00% Amr::initialInit() 1 1.568e-06 2.655e-06 5.459e-06 0.00% Other 264 0.01611 0.01919 0.0223 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.411 3.412 3.414 100.00% Amr::coarseTimeStep() 10 3.236 3.236 3.237 94.81% Amr::timeStep() 10 3.223 3.224 3.225 94.46% Castro::advance() 10 3.208 3.208 3.208 93.98% Castro::subcycle_advance_ctu() 10 3.132 3.136 3.15 92.27% Castro::do_advance_ctu() 10 3.132 3.136 3.15 92.27% Castro::construct_ctu_hydro_source() 10 2.407 2.412 2.416 70.76% Gravity::make_radial_gravity() 21 0.294 0.3034 0.3133 9.18% AmrLevel::FillPatch() 41 0.192 0.205 0.2262 6.62% Gravity::get_new_grav_vector() 11 0.2019 0.2038 0.2048 6.00% FillPatchIterator::Initialize 41 0.1615 0.1731 0.201 5.89% Castro::construct_old_gravity() 10 0.1717 0.1785 0.1864 5.46% Gravity::get_old_grav_vector() 10 0.171 0.1778 0.1857 5.44% Castro::construct_new_gravity() 10 0.1799 0.1811 0.182 5.33% check_for_negative_density() 10 0.047 0.1192 0.1748 5.12% Castro::initialize_do_advance() 10 0.1558 0.1615 0.1678 4.92% FillPatchIterator::FillFromLevel0() 41 0.1148 0.1268 0.1661 4.87% FillPatchSingleLevel 41 0.1146 0.1267 0.166 4.86% Amr::init() 1 0.163 0.1636 0.1643 4.81% Amr::initialInit() 1 0.148 0.1487 0.1494 4.38% FabArray::ParallelCopy() 41 0.08068 0.09589 0.1363 3.99% Amr::InitializeInit() 1 0.05561 0.09314 0.1218 3.57% Amr::defBaseLevel() 1 0.05561 0.09314 0.1218 3.57% Castro::expand_state() 10 0.1019 0.1087 0.1214 3.56% Castro::clean_state() 62 0.1114 0.1147 0.1161 3.40% Castro::do_old_sources() 10 0.1011 0.1057 0.1098 3.22% Castro::initData() 1 0.03817 0.07481 0.1028 3.01% FabArray::ParallelCopy_finish() 41 0.0362 0.0545 0.1009 2.96% Castro::estTimeStep() 21 0.02728 0.05871 0.09857 2.89% Amr::FinalizeInit() 1 0.02678 0.05553 0.0938 2.75% amrex::Copy() 193 0.0636 0.07731 0.08726 2.56% FabArray::setVal() 143 0.05538 0.06728 0.0738 2.16% Castro::initialize_advance() 10 0.05419 0.06829 0.07246 2.12% Castro::computeInitialDt() 2 0.00234 0.03115 0.06931 2.03% Castro::do_new_sources() 10 0.05777 0.06256 0.06807 1.99% Castro::computeTemp() 63 0.06167 0.06451 0.06602 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04442 0.0466 0.04795 1.40% Castro::reset_internal_energy(Fab) 1008 0.04414 0.04633 0.04769 1.40% FabArray::ParallelCopy_nowait() 41 0.03528 0.0413 0.04557 1.33% Castro::normalize_species() 62 0.04458 0.04495 0.0455 1.33% StateDataPhysBCFunct::() 41 0.02874 0.03076 0.03388 0.99% StateData::FillBoundary(geom) 41 0.02861 0.03064 0.03375 0.99% Castro::construct_new_source() 50 0.02789 0.03019 0.0327 0.96% Castro::construct_new_gravity_source() 10 0.02233 0.02422 0.02646 0.78% Gravity::interpolate_monopole_grav() 21 0.02538 0.02565 0.02617 0.77% Castro::post_init() 1 0.02368 0.02393 0.02415 0.71% Castro::finalize_do_advance() 10 0.01411 0.0193 0.02331 0.68% Amr::writePlotFile() 2 0.02245 0.0226 0.02301 0.67% Castro::post_timestep() 10 0.01511 0.01576 0.01658 0.49% Castro::apply_source_to_state() 20 0.01044 0.01232 0.01349 0.40% FabArray::Saxpy() 20 0.0104 0.01227 0.01344 0.39% FabArray::setDomainBndry() 41 0.007721 0.01111 0.01328 0.39% VisMF::Write(FabArray) 2 0.009079 0.00977 0.01227 0.36% Castro::Castro() 1 0.01006 0.01135 0.01208 0.35% Castro::check_for_nan() 20 0.009458 0.01061 0.01183 0.35% MultiFab::contains_nan() 20 0.009419 0.01059 0.01181 0.35% Castro::construct_old_source() 50 0.006765 0.00944 0.01057 0.31% Castro::construct_old_gravity_source() 10 0.006714 0.009367 0.01049 0.31% Castro::computeNewDt() 9 0.009412 0.009452 0.009498 0.28% Castro::initMFs() 1 0.006657 0.007183 0.007681 0.23% AmrLevel::AmrLevel(dm) 1 0.005711 0.006239 0.00672 0.20% Other 264 0.02071 0.02482 0.02906 0.85% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 2 B 3 B 4 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8639 KiB 8648 KiB 8652 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6771 KiB 6777 KiB 6781 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 7117 KiB 7123 KiB 7125 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 4576 KiB 4581 KiB 4603 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 209 KiB 223 KiB 249 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2810 KiB 2813 KiB 2814 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 219 KiB 226 KiB 233 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 36 KiB 42 KiB 61 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2022 KiB 2024 KiB 2025 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 75 KiB 76 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 64 KiB 66 KiB 69 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (25.12-9-gf4f3ea82e8bb) finalized