Initializing AMReX (25.12-14-gbb5b55299976)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.12-14-gbb5b55299976) initialized Starting run at 02:20:05 UTC on 2025-12-12. Successfully read inputs file ... Castro git describe: 25.12-1-g0cfe7694f AMReX git describe: 25.12-14-gbb5b55299 Microphysics git describe: 25.12-5-gf8cf33ae reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014485485 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.340104297 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.33630881 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.318349472 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.320893644 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.369293413 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.310450239 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.298924983 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299655434 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.301453902 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298174457 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.033383923 seconds Ending run at 02:20:09 UTC on 2025-12-12. Run time = 3.397294063 Run time without initialization = 3.232206245 Average number of zones advanced per microsecond: 0.811 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.3954 ... 3.3966 ... 3.3973 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2280 2.2694 2.3343 68.71% Gravity::make_radial_gravity() 21 0.2829 0.2913 0.3074 9.05% check_for_negative_density() 10 0.0169 0.08439 0.1292 3.80% Castro::initData() 1 0.04084 0.06925 0.09952 2.93% Castro::estTimeStep() 21 0.02449 0.06059 0.09179 2.70% amrex::Copy() 193 0.06501 0.08111 0.09046 2.66% FabArray::ParallelCopy_finish() 41 0.03852 0.05146 0.08988 2.65% FabArray::setVal() 143 0.05356 0.06574 0.07272 2.14% Castro::reset_internal_energy(Fab) 1008 0.04275 0.04591 0.04805 1.41% FabArray::ParallelCopy_nowait() 41 0.03623 0.04134 0.04295 1.26% Castro::normalize_species() 62 0.04157 0.04222 0.04279 1.26% Amr::writePlotFile() 2 0.007301 0.03209 0.03577 1.05% FillPatchIterator::Initialize 41 0.02781 0.0333 0.03551 1.05% StateData::FillBoundary(geom) 41 0.02664 0.03076 0.03274 0.96% Gravity::interpolate_monopole_grav() 21 0.02547 0.02632 0.02871 0.84% Castro::construct_new_gravity_source() 10 0.02263 0.02406 0.0262 0.77% UtilCreateCleanDirectory() 2 5.83e-07 0.003248 0.02598 0.76% Castro::initialize_do_advance() 10 0.01141 0.01654 0.01854 0.55% Castro::computeTemp() 63 0.01667 0.0177 0.01833 0.54% Castro::initialize_advance() 10 0.005444 0.01064 0.014 0.41% FabArray::Saxpy() 20 0.01059 0.01251 0.01397 0.41% VisMF::Write(FabArray) 2 0.009062 0.009672 0.01257 0.37% MultiFab::contains_nan() 20 0.009237 0.01021 0.01154 0.34% FabArray::setDomainBndry() 41 0.00758 0.01033 0.01123 0.33% Castro::construct_old_gravity_source() 10 0.007035 0.009527 0.01015 0.30% Castro::initMFs() 1 0.006406 0.006953 0.008126 0.24% Castro::construct_new_source() 50 0.005492 0.005969 0.00619 0.18% main() 1 0.003457 0.004075 0.004514 0.13% Gravity::get_new_grav_vector() 11 0.003027 0.003557 0.00391 0.12% Gravity::get_old_grav_vector() 10 0.001471 0.002124 0.002639 0.08% Amr::coarseTimeStep() 10 0.00103 0.00167 0.002334 0.07% Castro::finalize_do_advance() 10 0.0006288 0.001085 0.001249 0.04% AmrLevel::FillPatch() 41 0.0008234 0.0009985 0.001127 0.03% Amr::timeStep() 10 0.0001281 0.0001737 0.0003899 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002528 0.0002681 0.0002869 0.01% Castro::do_advance_ctu() 10 0.0001551 0.0001639 0.0001956 0.01% Castro::clean_state() 62 0.000139 0.0001511 0.0001759 0.01% StateDataPhysBCFunct::() 41 0.0001005 0.0001189 0.0001309 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001014 0.0001127 0.0001285 0.00% FabArray::ParallelCopy() 41 8.799e-05 9.571e-05 0.0001069 0.00% Castro::do_old_sources() 10 7.597e-05 8.89e-05 0.0001006 0.00% Castro::Castro() 1 5.456e-05 7.318e-05 9.974e-05 0.00% FillPatchSingleLevel 41 6.759e-05 7.599e-05 8.44e-05 0.00% Castro::construct_old_source() 50 5.241e-05 6.318e-05 7.64e-05 0.00% Amr::FinalizeInit() 1 4.211e-06 1.319e-05 6.744e-05 0.00% Castro::do_new_sources() 10 5.13e-05 5.65e-05 6.451e-05 0.00% Castro::apply_source_to_state() 20 4.83e-05 5.326e-05 6.206e-05 0.00% Castro::subcycle_advance_ctu() 10 4.524e-05 4.882e-05 5.786e-05 0.00% Castro::advance() 10 3.668e-05 4.187e-05 5.472e-05 0.00% Amr::defBaseLevel() 1 3.392e-05 4.103e-05 5.228e-05 0.00% Castro::construct_old_gravity() 10 3.447e-05 3.83e-05 4.352e-05 0.00% Castro::construct_new_gravity() 10 2.874e-05 3.282e-05 4.136e-05 0.00% Castro::expand_state() 10 2.279e-05 2.657e-05 3.055e-05 0.00% Castro::check_for_nan() 20 2.139e-05 2.348e-05 2.695e-05 0.00% Castro::post_init() 1 1.463e-05 1.697e-05 2.17e-05 0.00% Castro::post_timestep() 10 1.348e-05 1.644e-05 2.104e-05 0.00% Castro::computeNewDt() 9 7.402e-06 8.579e-06 9.134e-06 0.00% Amr::InitializeInit() 1 5.237e-06 6.246e-06 8.666e-06 0.00% Castro::computeInitialDt() 2 5.606e-06 6.304e-06 7.147e-06 0.00% Amr::init() 1 1.762e-06 2.209e-06 2.786e-06 0.00% Amr::initialInit() 1 1.296e-06 1.74e-06 2.224e-06 0.00% Other 263 0.01497 0.01867 0.02081 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.395 3.397 3.397 100.00% Amr::coarseTimeStep() 10 3.194 3.194 3.194 94.03% Amr::timeStep() 10 3.182 3.182 3.183 93.69% Castro::advance() 10 3.167 3.167 3.167 93.23% Castro::subcycle_advance_ctu() 10 3.091 3.097 3.112 91.61% Castro::do_advance_ctu() 10 3.091 3.097 3.112 91.61% Castro::construct_ctu_hydro_source() 10 2.371 2.374 2.377 69.98% Gravity::make_radial_gravity() 21 0.3002 0.3082 0.3218 9.47% AmrLevel::FillPatch() 41 0.193 0.2015 0.2129 6.27% Gravity::get_new_grav_vector() 11 0.207 0.2087 0.2104 6.19% Castro::construct_old_gravity() 10 0.1782 0.1831 0.1961 5.77% Gravity::get_old_grav_vector() 10 0.1775 0.1824 0.1955 5.75% FillPatchIterator::Initialize 41 0.1575 0.1677 0.1887 5.55% Castro::construct_new_gravity() 10 0.1834 0.184 0.185 5.44% Castro::initialize_do_advance() 10 0.159 0.1626 0.1658 4.88% Amr::init() 1 0.1636 0.1644 0.1649 4.85% FillPatchIterator::FillFromLevel0() 41 0.1113 0.1241 0.1533 4.51% FillPatchSingleLevel 41 0.1112 0.1239 0.1532 4.51% Amr::initialInit() 1 0.149 0.1502 0.1507 4.44% check_for_negative_density() 10 0.0169 0.08439 0.1292 3.80% FabArray::ParallelCopy() 41 0.08016 0.09299 0.1263 3.72% Amr::InitializeInit() 1 0.06284 0.0905 0.1207 3.55% Amr::defBaseLevel() 1 0.06283 0.0905 0.1207 3.55% Castro::expand_state() 10 0.1062 0.1107 0.1199 3.53% Castro::clean_state() 62 0.1068 0.1113 0.1144 3.37% Castro::initData() 1 0.04471 0.0731 0.1029 3.03% Castro::do_old_sources() 10 0.09286 0.0949 0.09805 2.89% Castro::estTimeStep() 21 0.02449 0.06059 0.09179 2.70% amrex::Copy() 193 0.06501 0.08111 0.09046 2.66% FabArray::ParallelCopy_finish() 41 0.03852 0.05146 0.08988 2.65% Amr::FinalizeInit() 1 0.02898 0.05965 0.08686 2.56% FabArray::setVal() 143 0.05356 0.06574 0.07272 2.14% Castro::initialize_advance() 10 0.05096 0.06714 0.07253 2.13% Castro::do_new_sources() 10 0.05847 0.06273 0.06959 2.05% Castro::computeTemp() 63 0.05973 0.06388 0.06664 1.96% Castro::computeInitialDt() 2 0.002323 0.03307 0.06013 1.77% Castro::reset_internal_energy(MultiFab) 63 0.04301 0.04618 0.04831 1.42% Amr::writePlotFile() 2 0.04758 0.04773 0.04812 1.42% Castro::reset_internal_energy(Fab) 1008 0.04275 0.04591 0.04805 1.41% FabArray::ParallelCopy_nowait() 41 0.03636 0.04143 0.04302 1.27% Castro::normalize_species() 62 0.04157 0.04222 0.04279 1.26% StateDataPhysBCFunct::() 41 0.02674 0.03088 0.03286 0.97% StateData::FillBoundary(geom) 41 0.02664 0.03076 0.03274 0.96% Castro::construct_new_source() 50 0.02828 0.03002 0.03235 0.95% Gravity::interpolate_monopole_grav() 21 0.02547 0.02632 0.02871 0.84% Castro::post_init() 1 0.02537 0.02607 0.02629 0.77% Castro::construct_new_gravity_source() 10 0.02263 0.02406 0.0262 0.77% UtilCreateCleanDirectory() 2 5.83e-07 0.003248 0.02598 0.76% Castro::finalize_do_advance() 10 0.01201 0.01945 0.02386 0.70% Castro::post_timestep() 10 0.01444 0.01506 0.01546 0.45% Castro::apply_source_to_state() 20 0.01064 0.01257 0.01403 0.41% FabArray::Saxpy() 20 0.01059 0.01251 0.01397 0.41% VisMF::Write(FabArray) 2 0.009062 0.009672 0.01257 0.37% Castro::Castro() 1 0.01012 0.01079 0.01172 0.35% Castro::check_for_nan() 20 0.009259 0.01023 0.01156 0.34% MultiFab::contains_nan() 20 0.009237 0.01021 0.01154 0.34% FabArray::setDomainBndry() 41 0.00758 0.01033 0.01123 0.33% Castro::construct_old_source() 50 0.007087 0.00959 0.01023 0.30% Castro::construct_old_gravity_source() 10 0.007035 0.009527 0.01015 0.30% Castro::computeNewDt() 9 0.009165 0.009175 0.009186 0.27% Castro::initMFs() 1 0.006406 0.006953 0.008126 0.24% Other 263 0.02484 0.03016 0.03375 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 3 B 3 B 5 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8641 KiB 8652 KiB 8656 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6773 KiB 6776 KiB 6777 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 7118 KiB 7125 KiB 7127 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 4538 KiB 4545 KiB 4564 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 211 KiB 221 KiB 237 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 15 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2787 KiB 2791 KiB 2791 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 224 KiB 230 KiB 240 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 35 KiB 41 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2023 KiB 2025 KiB 2026 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 78 KiB 78 KiB 79 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 67 KiB 68 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (25.12-14-gbb5b55299976) finalized