Initializing AMReX (25.12-11-gc23d2e158829)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.12-11-gc23d2e158829) initialized Starting run at 06:17:31 UTC on 2025-12-11. Successfully read inputs file ... Castro git describe: 25.12 AMReX git describe: 25.12-11-gc23d2e158 Microphysics git describe: 25.12-4-gbeb38e0d reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.018422571 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.355249796 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.343019737 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.322622202 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.319320541 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.357381896 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305283763 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.299997398 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.301836404 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.299221748 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.300846482 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007904307 seconds Ending run at 06:17:35 UTC on 2025-12-11. Run time = 3.40015069 Run time without initialization = 3.21747415 Average number of zones advanced per microsecond: 0.815 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3965 ... 3.3988 ... 3.4002 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2020 2.2581 2.3078 67.87% Gravity::make_radial_gravity() 21 0.2869 0.2963 0.3112 9.15% check_for_negative_density() 10 0.04225 0.09614 0.1553 4.57% Castro::estTimeStep() 21 0.03001 0.06847 0.1113 3.27% Castro::initData() 1 0.03388 0.0713 0.1074 3.16% amrex::Copy() 193 0.06803 0.08081 0.09535 2.80% FabArray::ParallelCopy_finish() 41 0.03728 0.05701 0.08731 2.57% FabArray::setVal() 143 0.05618 0.06627 0.07357 2.16% Castro::reset_internal_energy(Fab) 1008 0.04551 0.0468 0.04785 1.41% Castro::normalize_species() 62 0.04408 0.04506 0.04646 1.37% FabArray::ParallelCopy_nowait() 41 0.03475 0.03969 0.04145 1.22% FillPatchIterator::Initialize 41 0.02806 0.03225 0.0354 1.04% StateData::FillBoundary(geom) 41 0.02789 0.03072 0.03418 1.01% Gravity::interpolate_monopole_grav() 21 0.02558 0.02652 0.02818 0.83% Castro::construct_new_gravity_source() 10 0.02149 0.02301 0.0241 0.71% Castro::computeTemp() 63 0.01787 0.01816 0.0185 0.54% Castro::initialize_do_advance() 10 0.01163 0.01611 0.01751 0.52% Amr::writePlotFile() 2 0.007444 0.01378 0.01663 0.49% FabArray::Saxpy() 20 0.01044 0.01198 0.01334 0.39% Castro::initialize_advance() 10 0.005213 0.01054 0.01322 0.39% VisMF::Write(FabArray) 2 0.008611 0.009713 0.01212 0.36% MultiFab::contains_nan() 20 0.009176 0.01027 0.01117 0.33% FabArray::setDomainBndry() 41 0.007382 0.009751 0.01083 0.32% Castro::initMFs() 1 0.006708 0.008105 0.01077 0.32% Castro::construct_old_gravity_source() 10 0.006337 0.0087 0.009379 0.28% StateData::define() 4 0.005334 0.006553 0.008227 0.24% Castro::construct_new_source() 50 0.005637 0.005988 0.006213 0.18% main() 1 0.004013 0.004195 0.004382 0.13% Gravity::get_new_grav_vector() 11 0.002956 0.003512 0.003729 0.11% Gravity::get_old_grav_vector() 10 0.001636 0.002048 0.002547 0.07% Amr::coarseTimeStep() 10 0.0007145 0.001699 0.002443 0.07% AmrLevel::FillPatch() 41 0.0008179 0.001157 0.001283 0.04% Castro::finalize_do_advance() 10 0.0006102 0.001132 0.001281 0.04% Amr::timeStep() 10 0.0001329 0.0001915 0.0004384 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002603 0.0002784 0.0002928 0.01% Castro::do_advance_ctu() 10 0.0001479 0.0001674 0.0001964 0.01% Castro::clean_state() 62 0.0001368 0.0001595 0.0001767 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001071 0.0001197 0.0001454 0.00% StateDataPhysBCFunct::() 41 9.818e-05 0.000112 0.0001367 0.00% FabArray::ParallelCopy() 41 8.297e-05 9.386e-05 0.0001029 0.00% Castro::do_old_sources() 10 7.725e-05 8.686e-05 9.934e-05 0.00% FillPatchSingleLevel 41 7.046e-05 7.551e-05 8.75e-05 0.00% Castro::Castro() 1 5.693e-05 6.532e-05 7.571e-05 0.00% Amr::FinalizeInit() 1 3.736e-06 1.33e-05 7.488e-05 0.00% Castro::construct_old_source() 50 6.127e-05 6.778e-05 7.342e-05 0.00% Castro::do_new_sources() 10 5.075e-05 5.741e-05 6.396e-05 0.00% Amr::defBaseLevel() 1 3.807e-05 4.661e-05 6.262e-05 0.00% Castro::subcycle_advance_ctu() 10 4.588e-05 5.208e-05 5.98e-05 0.00% Castro::construct_old_gravity() 10 3.204e-05 4.007e-05 5.805e-05 0.00% Castro::apply_source_to_state() 20 4.312e-05 4.976e-05 5.786e-05 0.00% Castro::construct_new_gravity() 10 2.907e-05 3.471e-05 5.088e-05 0.00% Castro::advance() 10 3.574e-05 4.319e-05 4.937e-05 0.00% Castro::check_for_nan() 20 2.282e-05 2.683e-05 3.121e-05 0.00% Castro::expand_state() 10 2.037e-05 2.416e-05 2.833e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.511e-06 1.41e-05 2.714e-05 0.00% Castro::post_init() 1 1.476e-05 1.76e-05 2.326e-05 0.00% Castro::post_timestep() 10 1.392e-05 1.654e-05 2.15e-05 0.00% Castro::computeNewDt() 9 8.368e-06 9.629e-06 1.133e-05 0.00% Amr::InitializeInit() 1 5.823e-06 6.831e-06 9.433e-06 0.00% Castro::computeInitialDt() 2 5.274e-06 6.341e-06 8.152e-06 0.00% Amr::init() 1 1.655e-06 2.276e-06 2.898e-06 0.00% Amr::initialInit() 1 1.526e-06 2.139e-06 2.602e-06 0.00% Other 260 0.01042 0.01516 0.02176 0.64% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.397 3.399 3.4 100.00% Amr::coarseTimeStep() 10 3.205 3.205 3.205 94.27% Amr::timeStep() 10 3.192 3.193 3.194 93.94% Castro::advance() 10 3.177 3.177 3.177 93.45% Castro::subcycle_advance_ctu() 10 3.102 3.106 3.12 91.75% Castro::do_advance_ctu() 10 3.102 3.106 3.119 91.75% Castro::construct_ctu_hydro_source() 10 2.37 2.374 2.378 69.95% Gravity::make_radial_gravity() 21 0.3033 0.3126 0.3245 9.55% AmrLevel::FillPatch() 41 0.187 0.201 0.2122 6.24% Castro::construct_old_gravity() 10 0.1897 0.1953 0.2052 6.03% Gravity::get_old_grav_vector() 10 0.189 0.1947 0.2046 6.02% Gravity::get_new_grav_vector() 11 0.2002 0.2016 0.2028 5.97% FillPatchIterator::Initialize 41 0.1558 0.1699 0.186 5.47% Amr::init() 1 0.1788 0.1811 0.1824 5.37% Castro::construct_new_gravity() 10 0.1784 0.1794 0.1805 5.31% Amr::initialInit() 1 0.1597 0.1625 0.1638 4.82% Castro::initialize_do_advance() 10 0.1542 0.1597 0.1636 4.81% check_for_negative_density() 10 0.04225 0.09614 0.1553 4.57% FillPatchIterator::FillFromLevel0() 41 0.113 0.1279 0.1505 4.43% FillPatchSingleLevel 41 0.1129 0.1278 0.1504 4.42% Amr::InitializeInit() 1 0.05589 0.09561 0.1339 3.94% Amr::defBaseLevel() 1 0.05588 0.0956 0.1339 3.94% FabArray::ParallelCopy() 41 0.07848 0.09689 0.1223 3.60% Castro::clean_state() 62 0.1144 0.1155 0.1168 3.44% Castro::expand_state() 10 0.1012 0.1071 0.1159 3.41% Castro::estTimeStep() 21 0.03001 0.06847 0.1113 3.27% Castro::initData() 1 0.03743 0.07501 0.1108 3.26% Amr::FinalizeInit() 1 0.0263 0.06686 0.1079 3.17% Castro::do_old_sources() 10 0.0936 0.09892 0.1043 3.07% amrex::Copy() 193 0.06803 0.08081 0.09535 2.80% FabArray::ParallelCopy_finish() 41 0.03728 0.05701 0.08731 2.57% Castro::computeInitialDt() 2 0.002337 0.04293 0.08393 2.47% FabArray::setVal() 143 0.05618 0.06627 0.07357 2.16% Castro::initialize_advance() 10 0.05364 0.06783 0.07169 2.11% Castro::computeTemp() 63 0.06366 0.06524 0.06663 1.96% Castro::do_new_sources() 10 0.05634 0.06149 0.06579 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04578 0.04708 0.04813 1.42% Castro::reset_internal_energy(Fab) 1008 0.04551 0.0468 0.04785 1.41% Castro::normalize_species() 62 0.04408 0.04506 0.04646 1.37% FabArray::ParallelCopy_nowait() 41 0.03487 0.03979 0.04153 1.22% StateDataPhysBCFunct::() 41 0.02801 0.03083 0.03432 1.01% StateData::FillBoundary(geom) 41 0.02789 0.03072 0.03418 1.01% Castro::construct_new_source() 50 0.02713 0.029 0.03029 0.89% Gravity::interpolate_monopole_grav() 21 0.02558 0.02652 0.02818 0.83% Amr::writePlotFile() 2 0.02652 0.02665 0.02712 0.80% Castro::construct_new_gravity_source() 10 0.02149 0.02301 0.0241 0.71% Castro::post_init() 1 0.02313 0.02346 0.02364 0.70% Castro::finalize_do_advance() 10 0.0124 0.01749 0.02284 0.67% Castro::post_timestep() 10 0.01544 0.01602 0.01729 0.51% Castro::Castro() 1 0.009464 0.01165 0.01471 0.43% Castro::apply_source_to_state() 20 0.01048 0.01203 0.0134 0.39% FabArray::Saxpy() 20 0.01044 0.01198 0.01334 0.39% VisMF::Write(FabArray) 2 0.008611 0.009713 0.01212 0.36% Castro::check_for_nan() 20 0.009203 0.0103 0.0112 0.33% MultiFab::contains_nan() 20 0.009176 0.01027 0.01117 0.33% FabArray::setDomainBndry() 41 0.007382 0.009751 0.01083 0.32% Castro::initMFs() 1 0.006708 0.008105 0.01077 0.32% Castro::construct_old_source() 50 0.006398 0.008768 0.009452 0.28% Castro::construct_old_gravity_source() 10 0.006337 0.0087 0.009379 0.28% Castro::computeNewDt() 9 0.00919 0.009204 0.009214 0.27% AmrLevel::AmrLevel(dm) 1 0.005344 0.006567 0.008254 0.24% StateData::define() 4 0.005334 0.006553 0.008227 0.24% Other 260 0.01496 0.02237 0.03079 0.91% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 2 B 3 B 5 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8636 KiB 8643 KiB 8650 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6732 KiB 6740 KiB 6744 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 7112 KiB 7120 KiB 7122 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 4550 KiB 4555 KiB 4577 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 203 KiB 218 KiB 232 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2793 KiB 2797 KiB 2798 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 226 KiB 233 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 35 KiB 41 KiB 55 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2021 KiB 2023 KiB 2024 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 75 KiB 76 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 71 KiB 73 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (25.12-11-gc23d2e158829) finalized