Initializing AMReX (25.12-15-g4fc753db6b0b)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.12-15-g4fc753db6b0b) initialized Starting run at 20:34:21 UTC on 2025-12-12. Successfully read inputs file ... Castro git describe: 25.12-3-gc48479132 AMReX git describe: 25.12-15-g4fc753db6 Microphysics git describe: 25.12-5-gf8cf33ae reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014335532 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.32273603 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.313512603 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.318612874 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.306887824 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.359151199 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.300451849 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.286256525 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.287438129 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.287065712 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.286819904 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007587782 seconds Ending run at 20:34:25 UTC on 2025-12-12. Run time = 3.255829351 Run time without initialization = 3.08167031 Average number of zones advanced per microsecond: 0.851 Average number of zones advanced per microsecond per rank: 0.106 TinyProfiler total time across processes [min...avg...max]: 3.2509 ... 3.2539 ... 3.2559 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0855 2.1356 2.2035 67.68% Gravity::make_radial_gravity() 21 0.2793 0.2899 0.3063 9.41% check_for_negative_density() 10 0.01939 0.09105 0.144 4.42% Castro::initData() 1 0.03384 0.06976 0.108 3.32% Castro::estTimeStep() 21 0.03314 0.06708 0.1004 3.08% amrex::Copy() 193 0.06398 0.07972 0.08971 2.76% FabArray::ParallelCopy_finish() 41 0.03545 0.04893 0.08349 2.56% FabArray::setVal() 143 0.0612 0.067 0.07328 2.25% Castro::reset_internal_energy(Fab) 1008 0.04534 0.04666 0.04814 1.48% Castro::normalize_species() 62 0.04395 0.04514 0.04696 1.44% FabArray::ParallelCopy_nowait() 41 0.03442 0.04036 0.04189 1.29% FillPatchIterator::Initialize 41 0.02741 0.03365 0.03581 1.10% StateData::FillBoundary(geom) 41 0.0275 0.0312 0.03447 1.06% Gravity::interpolate_monopole_grav() 21 0.02564 0.02595 0.02653 0.81% Castro::construct_new_gravity_source() 10 0.02283 0.0239 0.02564 0.79% Castro::initialize_do_advance() 10 0.01201 0.01727 0.01926 0.59% Castro::computeTemp() 63 0.01748 0.01795 0.0185 0.57% FabArray::Saxpy() 20 0.01058 0.01239 0.01366 0.42% Castro::initialize_advance() 10 0.005264 0.01048 0.01349 0.41% Amr::writePlotFile() 2 0.007047 0.009806 0.01215 0.37% VisMF::Write(FabArray) 2 0.008517 0.00961 0.0121 0.37% FabArray::setDomainBndry() 41 0.008255 0.01036 0.01157 0.36% MultiFab::contains_nan() 20 0.009639 0.01027 0.01127 0.35% Castro::initMFs() 1 0.006406 0.007573 0.01109 0.34% Castro::construct_old_gravity_source() 10 0.007124 0.009412 0.009984 0.31% StateData::define() 4 0.005228 0.006097 0.008357 0.26% Castro::construct_new_source() 50 0.005436 0.005978 0.006186 0.19% main() 1 0.003956 0.004276 0.004748 0.15% Gravity::get_new_grav_vector() 11 0.002859 0.003593 0.004025 0.12% Gravity::get_old_grav_vector() 10 0.001572 0.00208 0.002667 0.08% Amr::coarseTimeStep() 10 0.001494 0.001782 0.002179 0.07% Castro::finalize_do_advance() 10 0.0005859 0.001141 0.001268 0.04% AmrLevel::FillPatch() 41 0.0007235 0.0009942 0.001171 0.04% Amr::timeStep() 10 0.0001385 0.0001742 0.0003463 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002554 0.0002641 0.0002757 0.01% Castro::do_advance_ctu() 10 0.0001565 0.0001719 0.000186 0.01% Castro::clean_state() 62 0.000141 0.0001537 0.000167 0.01% Castro::Castro() 1 5.312e-05 8.489e-05 0.0001549 0.00% StateDataPhysBCFunct::() 41 8.301e-05 0.0001128 0.0001268 0.00% FillPatchIterator::FillFromLevel0() 41 8.85e-05 0.0001065 0.0001248 0.00% FabArray::ParallelCopy() 41 7.612e-05 8.653e-05 9.946e-05 0.00% Castro::do_old_sources() 10 6.979e-05 8.129e-05 9.923e-05 0.00% Amr::FinalizeInit() 1 3.835e-06 1.45e-05 8.348e-05 0.00% Castro::construct_old_source() 50 4.837e-05 6.454e-05 8.115e-05 0.00% FillPatchSingleLevel 41 5.768e-05 6.376e-05 7.392e-05 0.00% Castro::do_new_sources() 10 4.718e-05 5.922e-05 6.719e-05 0.00% Castro::apply_source_to_state() 20 3.78e-05 5.294e-05 6.66e-05 0.00% Castro::subcycle_advance_ctu() 10 4.448e-05 4.847e-05 5.26e-05 0.00% Castro::construct_new_gravity() 10 2.988e-05 3.526e-05 4.704e-05 0.00% Castro::advance() 10 3.348e-05 3.962e-05 4.619e-05 0.00% Castro::construct_old_gravity() 10 3.348e-05 3.716e-05 4.435e-05 0.00% Amr::defBaseLevel() 1 2.601e-05 3.116e-05 4.249e-05 0.00% Castro::expand_state() 10 1.983e-05 2.554e-05 3.814e-05 0.00% Castro::check_for_nan() 20 2.041e-05 2.238e-05 2.405e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.119e-06 1.271e-05 2.258e-05 0.00% Castro::post_timestep() 10 1.329e-05 1.696e-05 2.077e-05 0.00% Castro::post_init() 1 1.344e-05 1.482e-05 1.62e-05 0.00% Castro::computeNewDt() 9 7.933e-06 9.255e-06 1.102e-05 0.00% Castro::computeInitialDt() 2 5.316e-06 6.718e-06 8.528e-06 0.00% Amr::InitializeInit() 1 5.397e-06 6.345e-06 8.482e-06 0.00% Amr::init() 1 2.118e-06 2.506e-06 2.742e-06 0.00% Amr::initialInit() 1 1.629e-06 1.833e-06 2.046e-06 0.00% Other 260 0.01035 0.01519 0.01856 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.251 3.254 3.256 100.00% Amr::coarseTimeStep() 10 3.069 3.069 3.069 94.27% Amr::timeStep() 10 3.057 3.057 3.058 93.91% Castro::advance() 10 3.041 3.041 3.042 93.42% Castro::subcycle_advance_ctu() 10 2.965 2.97 2.978 91.46% Castro::do_advance_ctu() 10 2.965 2.97 2.978 91.46% Castro::construct_ctu_hydro_source() 10 2.243 2.247 2.251 69.15% Gravity::make_radial_gravity() 21 0.2964 0.3063 0.3195 9.81% AmrLevel::FillPatch() 41 0.1823 0.1979 0.2068 6.35% Gravity::get_new_grav_vector() 11 0.2015 0.2027 0.2037 6.26% Castro::construct_old_gravity() 10 0.1777 0.1843 0.1963 6.03% Gravity::get_old_grav_vector() 10 0.177 0.1837 0.1957 6.01% FillPatchIterator::Initialize 41 0.1538 0.165 0.1822 5.59% Castro::construct_new_gravity() 10 0.1797 0.1805 0.1812 5.56% Amr::init() 1 0.1693 0.1723 0.1738 5.34% Castro::initialize_do_advance() 10 0.1575 0.1635 0.1677 5.15% Amr::initialInit() 1 0.1545 0.1579 0.1594 4.90% FillPatchIterator::FillFromLevel0() 41 0.1122 0.1209 0.1459 4.48% FillPatchSingleLevel 41 0.1121 0.1208 0.1458 4.48% check_for_negative_density() 10 0.01939 0.09105 0.144 4.42% Amr::InitializeInit() 1 0.05727 0.09414 0.1327 4.07% Amr::defBaseLevel() 1 0.05726 0.09413 0.1327 4.07% Castro::clean_state() 62 0.1127 0.1152 0.1191 3.66% FabArray::ParallelCopy() 41 0.07745 0.08946 0.1181 3.63% Castro::expand_state() 10 0.103 0.1097 0.1132 3.48% Castro::initData() 1 0.03758 0.0734 0.1116 3.43% Amr::FinalizeInit() 1 0.02564 0.06374 0.1013 3.11% Castro::estTimeStep() 21 0.03314 0.06708 0.1004 3.08% Castro::do_old_sources() 10 0.09001 0.09536 0.09787 3.01% amrex::Copy() 193 0.06398 0.07972 0.08971 2.76% FabArray::ParallelCopy_finish() 41 0.03545 0.04893 0.08349 2.56% Castro::computeInitialDt() 2 0.002223 0.03993 0.07736 2.38% Castro::initialize_advance() 10 0.05951 0.06815 0.07349 2.26% FabArray::setVal() 143 0.0612 0.067 0.07328 2.25% Castro::do_new_sources() 10 0.06066 0.06418 0.07011 2.15% Castro::computeTemp() 63 0.06308 0.06487 0.06685 2.05% Castro::reset_internal_energy(MultiFab) 63 0.0456 0.04692 0.04841 1.49% Castro::reset_internal_energy(Fab) 1008 0.04534 0.04666 0.04814 1.48% Castro::normalize_species() 62 0.04395 0.04514 0.04696 1.44% FabArray::ParallelCopy_nowait() 41 0.03451 0.04044 0.04197 1.29% StateDataPhysBCFunct::() 41 0.02762 0.03131 0.03459 1.06% StateData::FillBoundary(geom) 41 0.0275 0.0312 0.03447 1.06% Castro::construct_new_source() 50 0.02868 0.02987 0.03182 0.98% Gravity::interpolate_monopole_grav() 21 0.02564 0.02595 0.02653 0.81% Castro::construct_new_gravity_source() 10 0.02283 0.0239 0.02564 0.79% Castro::post_init() 1 0.02323 0.02343 0.02362 0.73% Castro::finalize_do_advance() 10 0.01225 0.01906 0.02275 0.70% Amr::writePlotFile() 2 0.02193 0.02209 0.02249 0.69% Castro::post_timestep() 10 0.01537 0.01569 0.01606 0.49% Castro::Castro() 1 0.01013 0.01154 0.01501 0.46% Castro::apply_source_to_state() 20 0.01061 0.01244 0.01372 0.42% FabArray::Saxpy() 20 0.01058 0.01239 0.01366 0.42% VisMF::Write(FabArray) 2 0.008517 0.00961 0.0121 0.37% FabArray::setDomainBndry() 41 0.008255 0.01036 0.01157 0.36% Castro::check_for_nan() 20 0.009664 0.01029 0.01129 0.35% MultiFab::contains_nan() 20 0.009639 0.01027 0.01127 0.35% Castro::initMFs() 1 0.006406 0.007573 0.01109 0.34% Castro::construct_old_source() 50 0.007173 0.009477 0.01006 0.31% Castro::construct_old_gravity_source() 10 0.007124 0.009412 0.009984 0.31% Castro::computeNewDt() 9 0.009229 0.009251 0.009269 0.28% AmrLevel::AmrLevel(dm) 1 0.005238 0.00611 0.008376 0.26% StateData::define() 4 0.005228 0.006097 0.008357 0.26% Other 260 0.01482 0.02309 0.02867 0.88% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 2 B 3 B 5 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8632 KiB 8640 KiB 8647 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6733 KiB 6741 KiB 6745 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 7109 KiB 7118 KiB 7121 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 4542 KiB 4549 KiB 4563 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 211 KiB 228 KiB 238 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 14 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2793 KiB 2796 KiB 2798 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 231 KiB 239 KiB 250 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 36 KiB 42 KiB 55 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2020 KiB 2022 KiB 2024 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 69 KiB 72 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (25.12-15-g4fc753db6b0b) finalized