Initializing AMReX (25.12-16-gfb1812114873)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.12-16-gfb1812114873) initialized Starting run at 06:19:26 UTC on 2025-12-15. Successfully read inputs file ... Castro git describe: 25.12-2-ga126e151c AMReX git describe: 25.12-16-gfb1812114 Microphysics git describe: 25.12-6-g18b6ec58 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015293243 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.343335106 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.33831798 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.337844149 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.322707702 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.37649025 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.317520596 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.312923571 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.305948616 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.307949656 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.304289393 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007503577 seconds Ending run at 06:19:29 UTC on 2025-12-15. Run time = 3.447482833 Run time without initialization = 3.280479448 Average number of zones advanced per microsecond: 0.799 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.4449 ... 3.4460 ... 3.4475 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2321 2.2849 2.3601 68.46% Gravity::make_radial_gravity() 21 0.289 0.2938 0.3078 8.93% check_for_negative_density() 10 0.03401 0.1086 0.1565 4.54% Castro::initData() 1 0.03438 0.06967 0.09999 2.90% amrex::Copy() 193 0.08226 0.08793 0.09857 2.86% Castro::estTimeStep() 21 0.02421 0.05811 0.09748 2.83% FabArray::ParallelCopy_finish() 41 0.04208 0.06 0.07594 2.20% FabArray::setVal() 143 0.06924 0.07191 0.07517 2.18% Castro::normalize_species() 62 0.04152 0.04461 0.04866 1.41% Castro::reset_internal_energy(Fab) 1008 0.04545 0.04688 0.04817 1.40% FabArray::ParallelCopy_nowait() 41 0.03771 0.04154 0.04354 1.26% FillPatchIterator::Initialize 41 0.02895 0.03472 0.03959 1.15% StateData::FillBoundary(geom) 41 0.02779 0.03145 0.03405 0.99% Gravity::interpolate_monopole_grav() 21 0.02599 0.02638 0.02686 0.78% Castro::construct_new_gravity_source() 10 0.02303 0.02402 0.02566 0.74% Castro::computeTemp() 63 0.01769 0.01826 0.01864 0.54% Castro::initialize_do_advance() 10 0.01541 0.01734 0.01799 0.52% Castro::initialize_advance() 10 0.01074 0.01251 0.01435 0.42% FabArray::Saxpy() 20 0.01195 0.01283 0.01399 0.41% VisMF::Write(FabArray) 2 0.009427 0.009867 0.01235 0.36% Castro::construct_old_gravity_source() 10 0.008962 0.009984 0.01194 0.35% FabArray::setDomainBndry() 41 0.008533 0.01082 0.0119 0.35% MultiFab::contains_nan() 20 0.00949 0.01028 0.01141 0.33% Amr::writePlotFile() 2 0.007849 0.01047 0.01111 0.32% Castro::initMFs() 1 0.006448 0.007127 0.008215 0.24% Castro::construct_new_source() 50 0.006205 0.006343 0.006541 0.19% main() 1 0.004031 0.004369 0.004954 0.14% Gravity::get_new_grav_vector() 11 0.003001 0.003519 0.003847 0.11% Gravity::get_old_grav_vector() 10 0.001651 0.002183 0.002517 0.07% Amr::coarseTimeStep() 10 0.0009034 0.001744 0.00227 0.07% Castro::finalize_do_advance() 10 0.001244 0.001327 0.001464 0.04% AmrLevel::FillPatch() 41 0.0008509 0.0009851 0.001076 0.03% Amr::timeStep() 10 0.0001232 0.0001863 0.0003728 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000256 0.000273 0.0002931 0.01% Castro::do_advance_ctu() 10 0.0001526 0.0001815 0.0002028 0.01% Castro::clean_state() 62 0.0001349 0.0001584 0.0001981 0.01% StateDataPhysBCFunct::() 41 0.0001009 0.0001209 0.0001457 0.00% Castro::do_old_sources() 10 8.575e-05 0.0001011 0.0001317 0.00% FabArray::ParallelCopy() 41 8.413e-05 9.811e-05 0.0001249 0.00% FillPatchIterator::FillFromLevel0() 41 9.758e-05 0.0001105 0.0001213 0.00% FillPatchSingleLevel 41 6.861e-05 7.975e-05 9.98e-05 0.00% Castro::construct_old_source() 50 5.738e-05 6.983e-05 8.847e-05 0.00% Amr::FinalizeInit() 1 3.807e-06 1.418e-05 8.27e-05 0.00% Castro::subcycle_advance_ctu() 10 4.831e-05 5.622e-05 7.725e-05 0.00% Castro::Castro() 1 5.286e-05 6.179e-05 7.038e-05 0.00% Castro::do_new_sources() 10 5.151e-05 5.905e-05 6.521e-05 0.00% Castro::apply_source_to_state() 20 4.503e-05 5.285e-05 6.519e-05 0.00% Amr::defBaseLevel() 1 3.628e-05 3.988e-05 4.855e-05 0.00% Castro::construct_old_gravity() 10 3.395e-05 3.838e-05 4.625e-05 0.00% Castro::advance() 10 3.939e-05 4.201e-05 4.536e-05 0.00% Castro::construct_new_gravity() 10 2.835e-05 3.378e-05 3.927e-05 0.00% Castro::check_for_nan() 20 2.207e-05 2.466e-05 2.939e-05 0.00% Castro::post_timestep() 10 1.316e-05 1.961e-05 2.934e-05 0.00% Castro::expand_state() 10 2.048e-05 2.413e-05 2.715e-05 0.00% Castro::post_init() 1 1.402e-05 1.561e-05 1.874e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.065e-05 1.174e-05 1.328e-05 0.00% Castro::computeNewDt() 9 7.836e-06 8.681e-06 9.807e-06 0.00% Castro::computeInitialDt() 2 5.2e-06 6.24e-06 7.007e-06 0.00% Amr::InitializeInit() 1 5.738e-06 6.327e-06 6.857e-06 0.00% Amr::initialInit() 1 1.464e-06 1.927e-06 2.717e-06 0.00% Amr::init() 1 1.595e-06 2.052e-06 2.643e-06 0.00% Other 264 0.01618 0.01958 0.02247 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.445 3.446 3.447 100.00% Amr::coarseTimeStep() 10 3.268 3.268 3.268 94.79% Amr::timeStep() 10 3.255 3.256 3.256 94.46% Castro::advance() 10 3.239 3.24 3.24 93.98% Castro::subcycle_advance_ctu() 10 3.159 3.162 3.165 91.81% Castro::do_advance_ctu() 10 3.159 3.162 3.165 91.81% Castro::construct_ctu_hydro_source() 10 2.41 2.414 2.417 70.12% Gravity::make_radial_gravity() 21 0.3079 0.3113 0.3224 9.35% AmrLevel::FillPatch() 41 0.2006 0.2148 0.2262 6.56% Gravity::get_new_grav_vector() 11 0.2071 0.2082 0.2096 6.08% Castro::construct_old_gravity() 10 0.1811 0.1881 0.1979 5.74% Gravity::get_old_grav_vector() 10 0.1805 0.1874 0.1972 5.72% FillPatchIterator::Initialize 41 0.1643 0.179 0.1891 5.48% Castro::construct_new_gravity() 10 0.1825 0.1831 0.1838 5.33% Castro::initialize_do_advance() 10 0.1553 0.1644 0.1682 4.88% Amr::init() 1 0.1648 0.1657 0.1667 4.84% check_for_negative_density() 10 0.03401 0.1086 0.1565 4.54% Amr::initialInit() 1 0.1491 0.15 0.1511 4.38% FillPatchIterator::FillFromLevel0() 41 0.1142 0.1335 0.142 4.12% FillPatchSingleLevel 41 0.1141 0.1334 0.1419 4.12% Amr::InitializeInit() 1 0.05611 0.09126 0.1207 3.50% Amr::defBaseLevel() 1 0.05611 0.09125 0.1207 3.50% Castro::clean_state() 62 0.1121 0.1154 0.1194 3.46% Castro::do_old_sources() 10 0.09631 0.1104 0.1173 3.40% Castro::expand_state() 10 0.1015 0.1106 0.1153 3.35% FabArray::ParallelCopy() 41 0.08323 0.1017 0.1139 3.30% Castro::initData() 1 0.03806 0.07341 0.1038 3.01% amrex::Copy() 193 0.08226 0.08793 0.09857 2.86% Castro::estTimeStep() 21 0.02421 0.05811 0.09748 2.83% Amr::FinalizeInit() 1 0.02919 0.05874 0.09361 2.72% Castro::initialize_advance() 10 0.07108 0.07415 0.07683 2.23% FabArray::ParallelCopy_finish() 41 0.04208 0.06 0.07594 2.20% FabArray::setVal() 143 0.06924 0.07191 0.07517 2.18% Castro::do_new_sources() 10 0.061 0.06455 0.06954 2.02% Castro::computeTemp() 63 0.06363 0.06542 0.06695 1.94% Castro::computeInitialDt() 2 0.002378 0.03193 0.06694 1.94% Castro::normalize_species() 62 0.04152 0.04461 0.04866 1.41% Castro::reset_internal_energy(MultiFab) 63 0.04571 0.04715 0.04845 1.41% Castro::reset_internal_energy(Fab) 1008 0.04545 0.04688 0.04817 1.40% FabArray::ParallelCopy_nowait() 41 0.03782 0.04164 0.04363 1.27% StateDataPhysBCFunct::() 41 0.02793 0.03158 0.03416 0.99% StateData::FillBoundary(geom) 41 0.02779 0.03145 0.03405 0.99% Castro::construct_new_source() 50 0.02926 0.03037 0.03221 0.93% Gravity::interpolate_monopole_grav() 21 0.02599 0.02638 0.02686 0.78% Castro::post_init() 1 0.02609 0.02634 0.02649 0.77% Castro::construct_new_gravity_source() 10 0.02303 0.02402 0.02566 0.74% Amr::writePlotFile() 2 0.02307 0.02331 0.02351 0.68% Castro::finalize_do_advance() 10 0.01261 0.01806 0.0225 0.65% Castro::post_timestep() 10 0.01521 0.01572 0.01629 0.47% Castro::apply_source_to_state() 20 0.01201 0.01288 0.01405 0.41% FabArray::Saxpy() 20 0.01195 0.01283 0.01399 0.41% VisMF::Write(FabArray) 2 0.009427 0.009867 0.01235 0.36% Castro::construct_old_source() 50 0.009023 0.01005 0.01203 0.35% Castro::construct_old_gravity_source() 10 0.008962 0.009984 0.01194 0.35% FabArray::setDomainBndry() 41 0.008533 0.01082 0.0119 0.35% Castro::Castro() 1 0.009758 0.0108 0.01185 0.34% Castro::check_for_nan() 20 0.009519 0.0103 0.01144 0.33% MultiFab::contains_nan() 20 0.00949 0.01028 0.01141 0.33% Castro::computeNewDt() 9 0.009447 0.009455 0.009466 0.27% Castro::initMFs() 1 0.006448 0.007127 0.008215 0.24% AmrLevel::AmrLevel(dm) 1 0.005418 0.006085 0.00684 0.20% Other 264 0.02098 0.0256 0.02998 0.87% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 2 B 3 B 5 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8639 KiB 8649 KiB 8653 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6770 KiB 6776 KiB 6778 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 7116 KiB 7124 KiB 7126 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 4570 KiB 4574 KiB 4579 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 218 KiB 229 KiB 241 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2810 KiB 2813 KiB 2814 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 227 KiB 229 KiB 237 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 37 KiB 42 KiB 47 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2022 KiB 2024 KiB 2025 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 76 KiB 77 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 67 KiB 69 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (25.12-16-gfb1812114873) finalized