Initializing AMReX (25.12-21-gbd922c6216e0)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.12-21-gbd922c6216e0) initialized Starting run at 06:17:19 UTC on 2025-12-19. Successfully read inputs file ... Castro git describe: 25.12-7-ge7fdfa058 AMReX git describe: 25.12-21-gbd922c621 Microphysics git describe: 25.12-12-gfcb7c769 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014399761 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.340569503 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.354613654 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.322807044 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.322005763 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.368811485 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.304899452 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.302201194 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.302835015 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.302832108 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.301273103 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007671903 seconds Ending run at 06:17:23 UTC on 2025-12-19. Run time = 3.424925717 Run time without initialization = 3.235016541 Average number of zones advanced per microsecond: 0.810 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4202 ... 3.4233 ... 3.4250 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2005 2.2659 2.3001 67.16% Gravity::make_radial_gravity() 21 0.2844 0.2985 0.3108 9.07% check_for_negative_density() 10 0.04379 0.08081 0.1493 4.36% Castro::estTimeStep() 21 0.0248 0.07654 0.1176 3.43% Castro::initData() 1 0.03383 0.07174 0.1151 3.36% FabArray::ParallelCopy_finish() 41 0.04973 0.06651 0.1048 3.06% amrex::Copy() 193 0.07015 0.08442 0.09595 2.80% FabArray::setVal() 143 0.05783 0.06801 0.07568 2.21% Castro::reset_internal_energy(Fab) 1008 0.04483 0.04747 0.04936 1.44% Castro::normalize_species() 62 0.04171 0.04379 0.04682 1.37% FabArray::ParallelCopy_nowait() 41 0.03549 0.04131 0.04357 1.27% StateData::FillBoundary(geom) 41 0.02783 0.03249 0.03759 1.10% FillPatchIterator::Initialize 41 0.02859 0.03444 0.037 1.08% Gravity::interpolate_monopole_grav() 21 0.0256 0.02639 0.02759 0.81% Castro::construct_new_gravity_source() 10 0.02103 0.02294 0.02366 0.69% Castro::initialize_do_advance() 10 0.01265 0.01769 0.01947 0.57% Castro::computeTemp() 63 0.01803 0.0184 0.01872 0.55% Castro::initialize_advance() 10 0.005384 0.01086 0.01347 0.39% FabArray::Saxpy() 20 0.01049 0.01247 0.01343 0.39% MultiFab::contains_nan() 20 0.009508 0.01097 0.01267 0.37% FabArray::setDomainBndry() 41 0.008682 0.01083 0.0121 0.35% VisMF::Write(FabArray) 2 0.00908 0.009533 0.01181 0.34% Amr::writePlotFile() 2 0.007328 0.009964 0.01067 0.31% Castro::initMFs() 1 0.006406 0.007652 0.01017 0.30% Castro::construct_old_gravity_source() 10 0.006191 0.008975 0.009831 0.29% StateData::define() 4 0.005294 0.006609 0.009442 0.28% Castro::construct_new_source() 50 0.00593 0.006407 0.006655 0.19% main() 1 0.003757 0.003902 0.004069 0.12% Gravity::get_new_grav_vector() 11 0.002966 0.003591 0.003865 0.11% Amr::coarseTimeStep() 10 0.001381 0.002087 0.002715 0.08% Gravity::get_old_grav_vector() 10 0.001824 0.002181 0.002652 0.08% Castro::finalize_do_advance() 10 0.0005225 0.001134 0.001258 0.04% AmrLevel::FillPatch() 41 0.0008043 0.0008988 0.0009759 0.03% Amr::timeStep() 10 0.000135 0.0001846 0.0003888 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000254 0.0002685 0.0002808 0.01% Castro::do_advance_ctu() 10 0.0001387 0.0001596 0.0001937 0.01% Castro::clean_state() 62 0.0001385 0.0001511 0.0001669 0.00% StateDataPhysBCFunct::() 41 0.0001093 0.0001202 0.0001333 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001053 0.0001136 0.0001296 0.00% FabArray::ParallelCopy() 41 8.831e-05 9.409e-05 0.0001055 0.00% Castro::Castro() 1 5.401e-05 6.964e-05 9.582e-05 0.00% Castro::do_old_sources() 10 7.247e-05 8.371e-05 9.515e-05 0.00% Amr::FinalizeInit() 1 3.797e-06 1.511e-05 8.998e-05 0.00% Castro::subcycle_advance_ctu() 10 4.352e-05 5.487e-05 8.781e-05 0.00% FillPatchSingleLevel 41 7.235e-05 7.647e-05 8.049e-05 0.00% Castro::construct_old_source() 50 4.191e-05 6.131e-05 7.288e-05 0.00% Castro::apply_source_to_state() 20 4.254e-05 5.099e-05 6.753e-05 0.00% Castro::do_new_sources() 10 4.623e-05 5.557e-05 6.08e-05 0.00% Amr::defBaseLevel() 1 3.809e-05 4.603e-05 5.688e-05 0.00% Castro::advance() 10 3.659e-05 4.343e-05 5.256e-05 0.00% Castro::construct_old_gravity() 10 3.416e-05 4.053e-05 4.609e-05 0.00% Castro::construct_new_gravity() 10 2.87e-05 3.046e-05 3.279e-05 0.00% Castro::expand_state() 10 2.293e-05 2.625e-05 2.962e-05 0.00% Castro::check_for_nan() 20 2.105e-05 2.301e-05 2.627e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.745e-06 1.435e-05 2.461e-05 0.00% Castro::post_init() 1 1.535e-05 1.743e-05 1.974e-05 0.00% Castro::post_timestep() 10 1.298e-05 1.522e-05 1.905e-05 0.00% Castro::computeNewDt() 9 7.801e-06 8.891e-06 9.81e-06 0.00% Amr::InitializeInit() 1 5.395e-06 6.819e-06 9.294e-06 0.00% Castro::computeInitialDt() 2 5.008e-06 6.165e-06 7.462e-06 0.00% Amr::init() 1 1.886e-06 2.286e-06 3.104e-06 0.00% Amr::initialInit() 1 1.806e-06 2.229e-06 2.835e-06 0.00% Other 260 0.01057 0.01598 0.01978 0.58% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.42 3.423 3.425 100.00% Amr::coarseTimeStep() 10 3.223 3.223 3.223 94.11% Amr::timeStep() 10 3.21 3.21 3.211 93.76% Castro::advance() 10 3.194 3.194 3.195 93.27% Castro::subcycle_advance_ctu() 10 3.115 3.121 3.134 91.52% Castro::do_advance_ctu() 10 3.115 3.121 3.134 91.52% Castro::construct_ctu_hydro_source() 10 2.364 2.367 2.371 69.21% Gravity::make_radial_gravity() 21 0.3026 0.3157 0.3254 9.50% AmrLevel::FillPatch() 41 0.2004 0.221 0.2377 6.94% FillPatchIterator::Initialize 41 0.1681 0.1861 0.2064 6.03% Gravity::get_new_grav_vector() 11 0.2047 0.2055 0.2063 6.02% Castro::construct_old_gravity() 10 0.1847 0.1963 0.2057 6.01% Gravity::get_old_grav_vector() 10 0.1837 0.1954 0.2046 5.97% Amr::init() 1 0.1845 0.188 0.1898 5.54% Castro::initialize_do_advance() 10 0.1616 0.177 0.1858 5.42% Castro::construct_new_gravity() 10 0.1817 0.1821 0.1827 5.34% Amr::initialInit() 1 0.17 0.1733 0.1752 5.12% FillPatchIterator::FillFromLevel0() 41 0.1204 0.1408 0.1686 4.92% FillPatchSingleLevel 41 0.1203 0.1407 0.1685 4.92% check_for_negative_density() 10 0.04379 0.08081 0.1493 4.36% Amr::InitializeInit() 1 0.05774 0.09697 0.1429 4.17% Amr::defBaseLevel() 1 0.05773 0.09696 0.1429 4.17% FabArray::ParallelCopy() 41 0.09055 0.108 0.1405 4.10% Castro::expand_state() 10 0.1062 0.1226 0.1333 3.89% Castro::initData() 1 0.03746 0.07538 0.1186 3.46% Castro::clean_state() 62 0.1105 0.1152 0.118 3.44% Castro::estTimeStep() 21 0.0248 0.07654 0.1176 3.43% Amr::FinalizeInit() 1 0.02713 0.07636 0.1162 3.39% Castro::do_old_sources() 10 0.09326 0.1025 0.1076 3.14% FabArray::ParallelCopy_finish() 41 0.04973 0.06651 0.1048 3.06% amrex::Copy() 193 0.07015 0.08442 0.09595 2.80% Castro::computeInitialDt() 2 0.002546 0.05169 0.09173 2.68% Castro::initialize_advance() 10 0.05576 0.06966 0.07586 2.21% FabArray::setVal() 143 0.05783 0.06801 0.07568 2.21% Castro::computeTemp() 63 0.06311 0.06615 0.06821 1.99% Castro::do_new_sources() 10 0.05719 0.06263 0.06594 1.93% Castro::reset_internal_energy(MultiFab) 63 0.04508 0.04774 0.04964 1.45% Castro::reset_internal_energy(Fab) 1008 0.04483 0.04747 0.04936 1.44% Castro::normalize_species() 62 0.04171 0.04379 0.04682 1.37% FabArray::ParallelCopy_nowait() 41 0.03557 0.0414 0.04364 1.27% StateDataPhysBCFunct::() 41 0.02794 0.03261 0.03773 1.10% StateData::FillBoundary(geom) 41 0.02783 0.03249 0.03759 1.10% Castro::construct_new_source() 50 0.02696 0.02935 0.03026 0.88% Gravity::interpolate_monopole_grav() 21 0.0256 0.02639 0.02759 0.81% Castro::post_init() 1 0.02403 0.02439 0.02467 0.72% Castro::construct_new_gravity_source() 10 0.02103 0.02294 0.02366 0.69% Amr::writePlotFile() 2 0.02226 0.0224 0.02257 0.66% Castro::finalize_do_advance() 10 0.01321 0.01656 0.02159 0.63% Castro::post_timestep() 10 0.01524 0.01595 0.01669 0.49% Castro::Castro() 1 0.009895 0.0114 0.01448 0.42% Castro::apply_source_to_state() 20 0.01053 0.01252 0.01348 0.39% FabArray::Saxpy() 20 0.01049 0.01247 0.01343 0.39% Castro::check_for_nan() 20 0.009532 0.011 0.01269 0.37% MultiFab::contains_nan() 20 0.009508 0.01097 0.01267 0.37% FabArray::setDomainBndry() 41 0.008682 0.01083 0.0121 0.35% VisMF::Write(FabArray) 2 0.00908 0.009533 0.01181 0.34% Castro::initMFs() 1 0.006406 0.007652 0.01017 0.30% Castro::construct_old_source() 50 0.006233 0.009037 0.009903 0.29% Castro::construct_old_gravity_source() 10 0.006191 0.008975 0.009831 0.29% AmrLevel::AmrLevel(dm) 1 0.005305 0.006624 0.009466 0.28% Castro::computeNewDt() 9 0.009399 0.009436 0.009462 0.28% StateData::define() 4 0.005294 0.006609 0.009442 0.28% Other 260 0.01535 0.0246 0.03064 0.89% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 3 B 4 B 12 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8621 KiB 8640 KiB 8647 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6722 KiB 6728 KiB 6731 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 7109 KiB 7118 KiB 7120 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 4536 KiB 4544 KiB 4565 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 216 KiB 243 KiB 263 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 15 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2789 KiB 2792 KiB 2793 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 224 KiB 234 KiB 241 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 42 KiB 48 KiB 63 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2019 KiB 2023 KiB 2024 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 76 KiB 76 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 68 KiB 73 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (25.12-21-gbd922c6216e0) finalized