Initializing AMReX (25.12-23-gb647b95c5835)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.12-23-gb647b95c5835) initialized Starting run at 21:27:06 UTC on 2025-12-21. Successfully read inputs file ... Castro git describe: 25.12-8-g82f64a11b AMReX git describe: 25.12-23-gb647b95c5 Microphysics git describe: 25.12-12-gfcb7c769 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.01489479 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.352500405 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.350754655 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.335306838 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.323191642 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.374550587 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.312421065 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.300129669 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.301055886 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.299338976 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.300569777 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00660354 seconds Ending run at 21:27:10 UTC on 2025-12-21. Run time = 3.437994168 Run time without initialization = 3.261448463 Average number of zones advanced per microsecond: 0.804 Average number of zones advanced per microsecond per rank: 0.100 TinyProfiler total time across processes [min...avg...max]: 3.4364 ... 3.4374 ... 3.4385 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2139 2.2714 2.3611 68.67% Gravity::make_radial_gravity() 21 0.287 0.2957 0.2997 8.72% check_for_negative_density() 10 0.02921 0.1229 0.1814 5.28% Castro::estTimeStep() 21 0.03512 0.06763 0.1133 3.29% Castro::initData() 1 0.03523 0.07393 0.1114 3.24% amrex::Copy() 193 0.07955 0.08264 0.09007 2.62% FabArray::setVal() 143 0.06522 0.07009 0.07494 2.18% FabArray::ParallelCopy_finish() 41 0.03891 0.04583 0.05586 1.62% Castro::reset_internal_energy(Fab) 1008 0.04555 0.04729 0.04855 1.41% Castro::normalize_species() 62 0.0417 0.04244 0.04431 1.29% FabArray::ParallelCopy_nowait() 41 0.03891 0.04155 0.04265 1.24% FillPatchIterator::Initialize 41 0.02821 0.03365 0.0358 1.04% StateData::FillBoundary(geom) 41 0.02956 0.03161 0.03476 1.01% Gravity::interpolate_monopole_grav() 21 0.02542 0.02614 0.02685 0.78% Castro::construct_new_gravity_source() 10 0.02289 0.02416 0.02544 0.74% Castro::computeTemp() 63 0.01805 0.01853 0.01912 0.56% Castro::initialize_do_advance() 10 0.01551 0.0176 0.01871 0.54% Castro::initialize_advance() 10 0.01058 0.01232 0.01449 0.42% FabArray::Saxpy() 20 0.01249 0.0134 0.01432 0.42% FabArray::setDomainBndry() 41 0.00807 0.01122 0.01326 0.39% MultiFab::contains_nan() 20 0.009688 0.01082 0.01207 0.35% VisMF::Write(FabArray) 2 0.008068 0.008654 0.01115 0.32% Amr::writePlotFile() 2 0.007481 0.009884 0.0107 0.31% Castro::construct_old_gravity_source() 10 0.01002 0.01029 0.01069 0.31% Castro::initMFs() 1 0.006227 0.007016 0.00752 0.22% Castro::construct_new_source() 50 0.006107 0.006256 0.006431 0.19% main() 1 0.003432 0.004138 0.004472 0.13% Gravity::get_new_grav_vector() 11 0.003359 0.003633 0.003874 0.11% Gravity::get_old_grav_vector() 10 0.001788 0.00222 0.002656 0.08% Amr::coarseTimeStep() 10 0.001422 0.001756 0.002125 0.06% Castro::finalize_do_advance() 10 0.0009517 0.001121 0.001236 0.04% AmrLevel::FillPatch() 41 0.0007838 0.0009261 0.001045 0.03% Amr::timeStep() 10 0.0001426 0.0001847 0.0004117 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002428 0.0002635 0.0002951 0.01% Castro::do_advance_ctu() 10 0.0001426 0.0001645 0.0001966 0.01% Castro::clean_state() 62 0.0001325 0.0001536 0.0001689 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001034 0.0001157 0.000124 0.00% StateDataPhysBCFunct::() 41 9.905e-05 0.000106 0.0001131 0.00% Castro::do_old_sources() 10 7.339e-05 8.986e-05 0.0001005 0.00% FabArray::ParallelCopy() 41 8.453e-05 9.05e-05 9.951e-05 0.00% Castro::Castro() 1 5.14e-05 7.049e-05 9.151e-05 0.00% Amr::FinalizeInit() 1 3.638e-06 1.493e-05 8.966e-05 0.00% FillPatchSingleLevel 41 7.084e-05 7.78e-05 8.449e-05 0.00% Castro::construct_old_source() 50 6.125e-05 7.194e-05 8.024e-05 0.00% Castro::do_new_sources() 10 5.056e-05 6.063e-05 7.567e-05 0.00% Castro::subcycle_advance_ctu() 10 4.543e-05 5.527e-05 6.266e-05 0.00% Castro::apply_source_to_state() 20 4.216e-05 4.71e-05 5.671e-05 0.00% Castro::construct_old_gravity() 10 3.561e-05 4.189e-05 5.214e-05 0.00% Castro::advance() 10 3.709e-05 4.413e-05 5.008e-05 0.00% Amr::defBaseLevel() 1 3.748e-05 3.994e-05 4.598e-05 0.00% Castro::construct_new_gravity() 10 2.906e-05 3.477e-05 4.022e-05 0.00% Castro::expand_state() 10 2.277e-05 2.703e-05 3.024e-05 0.00% Castro::check_for_nan() 20 2.136e-05 2.407e-05 2.913e-05 0.00% Castro::post_timestep() 10 1.465e-05 1.621e-05 1.866e-05 0.00% Castro::post_init() 1 1.308e-05 1.411e-05 1.526e-05 0.00% Castro::computeNewDt() 9 8.434e-06 9.347e-06 1.033e-05 0.00% Castro::computeInitialDt() 2 5.874e-06 6.346e-06 7.034e-06 0.00% Amr::InitializeInit() 1 2.508e-06 3.081e-06 5.415e-06 0.00% Amr::initialInit() 1 1.589e-06 1.97e-06 2.765e-06 0.00% Amr::init() 1 1.928e-06 2.173e-06 2.598e-06 0.00% Other 265 0.01593 0.01877 0.02132 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.436 3.437 3.438 100.00% Amr::coarseTimeStep() 10 3.25 3.25 3.25 94.53% Amr::timeStep() 10 3.237 3.237 3.238 94.16% Castro::advance() 10 3.221 3.221 3.222 93.70% Castro::subcycle_advance_ctu() 10 3.143 3.146 3.149 91.59% Castro::do_advance_ctu() 10 3.142 3.146 3.149 91.59% Castro::construct_ctu_hydro_source() 10 2.411 2.415 2.419 70.34% Gravity::make_radial_gravity() 21 0.3035 0.3128 0.3182 9.25% Gravity::get_new_grav_vector() 11 0.2069 0.2079 0.2087 6.07% AmrLevel::FillPatch() 41 0.1916 0.1987 0.2082 6.05% Castro::construct_old_gravity() 10 0.1797 0.187 0.1902 5.53% Gravity::get_old_grav_vector() 10 0.1789 0.1863 0.1896 5.51% Castro::construct_new_gravity() 10 0.182 0.1831 0.1842 5.36% check_for_negative_density() 10 0.02921 0.1229 0.1814 5.28% Amr::init() 1 0.1756 0.1759 0.1766 5.14% FillPatchIterator::Initialize 41 0.1608 0.1643 0.1724 5.01% Castro::initialize_do_advance() 10 0.1613 0.1647 0.1698 4.94% Amr::initialInit() 1 0.1605 0.1612 0.1619 4.71% Amr::InitializeInit() 1 0.05417 0.09463 0.1321 3.84% Amr::defBaseLevel() 1 0.05416 0.09462 0.1321 3.84% FillPatchIterator::FillFromLevel0() 41 0.1134 0.1195 0.125 3.63% FillPatchSingleLevel 41 0.1133 0.1194 0.1248 3.63% Castro::clean_state() 62 0.1115 0.1139 0.1177 3.42% Castro::initData() 1 0.03871 0.07763 0.1152 3.35% Castro::expand_state() 10 0.1067 0.1101 0.1139 3.31% Castro::estTimeStep() 21 0.03512 0.06763 0.1133 3.29% Amr::FinalizeInit() 1 0.02893 0.06655 0.1073 3.12% Castro::do_old_sources() 10 0.09329 0.09673 0.1003 2.92% FabArray::ParallelCopy() 41 0.08087 0.08756 0.09497 2.76% amrex::Copy() 193 0.07955 0.08264 0.09007 2.62% Castro::computeInitialDt() 2 0.002473 0.04025 0.08134 2.37% Castro::initialize_advance() 10 0.06887 0.07244 0.07572 2.20% FabArray::setVal() 143 0.06522 0.07009 0.07494 2.18% Castro::do_new_sources() 10 0.06034 0.06457 0.06949 2.02% Castro::computeTemp() 63 0.06397 0.06608 0.0678 1.97% FabArray::ParallelCopy_finish() 41 0.03891 0.04583 0.05586 1.62% Castro::reset_internal_energy(MultiFab) 63 0.0458 0.04756 0.04882 1.42% Castro::reset_internal_energy(Fab) 1008 0.04555 0.04729 0.04855 1.41% Castro::normalize_species() 62 0.0417 0.04244 0.04431 1.29% FabArray::ParallelCopy_nowait() 41 0.03902 0.04165 0.04275 1.24% StateDataPhysBCFunct::() 41 0.02967 0.03171 0.03486 1.01% StateData::FillBoundary(geom) 41 0.02956 0.03161 0.03476 1.01% Castro::construct_new_source() 50 0.02904 0.03042 0.03182 0.93% Gravity::interpolate_monopole_grav() 21 0.02542 0.02614 0.02685 0.78% Castro::post_init() 1 0.02561 0.02601 0.02627 0.76% Castro::construct_new_gravity_source() 10 0.02289 0.02416 0.02544 0.74% Castro::finalize_do_advance() 10 0.01338 0.01847 0.02378 0.69% Amr::writePlotFile() 2 0.02117 0.02141 0.02181 0.63% Castro::post_timestep() 10 0.01523 0.01566 0.01607 0.47% Castro::apply_source_to_state() 20 0.01254 0.01345 0.01437 0.42% FabArray::Saxpy() 20 0.01249 0.0134 0.01432 0.42% FabArray::setDomainBndry() 41 0.00807 0.01122 0.01326 0.39% Castro::check_for_nan() 20 0.009714 0.01085 0.0121 0.35% MultiFab::contains_nan() 20 0.009688 0.01082 0.01207 0.35% Castro::Castro() 1 0.009169 0.01077 0.01175 0.34% VisMF::Write(FabArray) 2 0.008068 0.008654 0.01115 0.32% Castro::construct_old_source() 50 0.01008 0.01036 0.01076 0.31% Castro::construct_old_gravity_source() 10 0.01002 0.01029 0.01069 0.31% Castro::computeNewDt() 9 0.01001 0.01004 0.01006 0.29% Castro::initMFs() 1 0.006227 0.007016 0.00752 0.22% Other 265 0.02561 0.02974 0.03389 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 3 B 3 B 5 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8648 KiB 8654 KiB 8658 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6750 KiB 6755 KiB 6757 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 7120 KiB 7127 KiB 7129 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 4559 KiB 4563 KiB 4565 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 209 KiB 217 KiB 226 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 14 KiB 15 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2802 KiB 2805 KiB 2806 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 224 KiB 231 KiB 235 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 36 KiB 38 KiB 42 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2024 KiB 2026 KiB 2026 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 77 KiB 77 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 66 KiB 69 KiB 70 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (25.12-23-gb647b95c5835) finalized