Initializing AMReX (25.12-23-gb647b95c5835)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.12-23-gb647b95c5835) initialized Starting run at 13:41:26 UTC on 2025-12-22. Successfully read inputs file ... Castro git describe: 25.12-13-g470f9c877 AMReX git describe: 25.12-23-gb647b95c5 Microphysics git describe: 25.12-12-gfcb7c769 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 1.129495385 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.320806744 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.344832969 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.286349128 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.284331474 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.28567051 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.284492167 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.286011258 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.285020814 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.295639355 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.288438507 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.039885443 seconds Ending run at 13:41:30 UTC on 2025-12-22. Run time = 4.292755636 Run time without initialization = 3.006445989 Average number of zones advanced per microsecond: 0.872 Average number of zones advanced per microsecond per rank: 0.109 TinyProfiler total time across processes [min...avg...max]: 4.2907 ... 4.2920 ... 4.2929 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0558 2.0985 2.1376 49.79% Amr::writePlotFile() 2 0.006933 1.016 1.16 27.03% UtilCreateCleanDirectory() 2 4.87e-07 0.09545 0.7636 17.79% VisMF::Write(FabArray) 2 0.007095 0.05588 0.3964 9.23% Gravity::make_radial_gravity() 21 0.2802 0.288 0.2965 6.91% check_for_negative_density() 10 0.03063 0.06873 0.1129 2.63% Castro::initData() 1 0.03512 0.07113 0.1079 2.51% Castro::estTimeStep() 21 0.02671 0.06622 0.1049 2.44% amrex::Copy() 193 0.06671 0.07066 0.07939 1.85% FabArray::ParallelCopy_finish() 41 0.03812 0.05535 0.06208 1.45% FabArray::setVal() 143 0.05352 0.05622 0.06132 1.43% Castro::reset_internal_energy(Fab) 1008 0.04383 0.04685 0.05474 1.28% FabArray::ParallelCopy_nowait() 41 0.03556 0.03725 0.04509 1.05% Castro::normalize_species() 62 0.04129 0.04198 0.04277 1.00% StateData::FillBoundary(geom) 41 0.02751 0.02953 0.03188 0.74% FillPatchIterator::Initialize 41 0.02948 0.03041 0.03088 0.72% Gravity::interpolate_monopole_grav() 21 0.02545 0.02596 0.02664 0.62% Castro::construct_new_gravity_source() 10 0.01916 0.01982 0.02106 0.49% Castro::computeTemp() 63 0.01753 0.01801 0.01854 0.43% Castro::initialize_do_advance() 10 0.01305 0.01384 0.01506 0.35% MultiFab::contains_nan() 20 0.008805 0.009758 0.0104 0.24% Castro::initialize_advance() 10 0.006359 0.007134 0.0102 0.24% FabArray::Saxpy() 20 0.009164 0.009481 0.009961 0.23% FabArray::setDomainBndry() 41 0.008503 0.008948 0.009303 0.22% Castro::initMFs() 1 0.006284 0.006881 0.00755 0.18% Castro::construct_new_source() 50 0.005008 0.005125 0.005226 0.12% main() 1 0.003223 0.003863 0.004091 0.10% Gravity::get_new_grav_vector() 11 0.003088 0.003272 0.003471 0.08% Gravity::get_old_grav_vector() 10 0.001697 0.001912 0.002205 0.05% Amr::coarseTimeStep() 10 0.001534 0.00183 0.002041 0.05% Castro::finalize_do_advance() 10 0.0006065 0.0007455 0.001092 0.03% AmrLevel::FillPatch() 41 0.0007337 0.0008249 0.0009438 0.02% Amr::timeStep() 10 0.0001271 0.0001656 0.0003817 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000238 0.0002594 0.0002968 0.01% Castro::do_advance_ctu() 10 0.000129 0.0001461 0.0001827 0.00% StateDataPhysBCFunct::() 41 0.0001096 0.0001284 0.0001619 0.00% Castro::clean_state() 62 0.0001262 0.0001439 0.0001563 0.00% Castro::do_old_sources() 10 7.804e-05 9.575e-05 0.0001233 0.00% FillPatchIterator::FillFromLevel0() 41 9.879e-05 0.0001037 0.0001122 0.00% FabArray::ParallelCopy() 41 7.904e-05 8.964e-05 0.0001077 0.00% Castro::Castro() 1 5.669e-05 6.389e-05 8.435e-05 0.00% FillPatchSingleLevel 41 6.13e-05 6.692e-05 7.614e-05 0.00% Amr::FinalizeInit() 1 3.629e-06 1.285e-05 7.217e-05 0.00% Castro::do_new_sources() 10 4.649e-05 5.427e-05 7.055e-05 0.00% Castro::construct_old_source() 50 4.62e-05 5.752e-05 6.216e-05 0.00% Castro::subcycle_advance_ctu() 10 4.005e-05 4.372e-05 5.313e-05 0.00% Castro::construct_old_gravity() 10 2.909e-05 4.209e-05 5.14e-05 0.00% Amr::defBaseLevel() 1 3.706e-05 4.26e-05 5.095e-05 0.00% Castro::advance() 10 3.458e-05 3.809e-05 4.561e-05 0.00% Castro::construct_new_gravity() 10 2.748e-05 3.298e-05 4.238e-05 0.00% Castro::apply_source_to_state() 20 3.033e-05 3.731e-05 4.034e-05 0.00% Castro::check_for_nan() 20 2.185e-05 2.494e-05 3.063e-05 0.00% Castro::expand_state() 10 1.763e-05 2.12e-05 2.685e-05 0.00% Castro::post_init() 1 1.245e-05 1.405e-05 1.947e-05 0.00% Castro::post_timestep() 10 1.381e-05 1.519e-05 1.757e-05 0.00% Amr::InitializeInit() 1 2.595e-06 4.626e-06 1.355e-05 0.00% Castro::computeNewDt() 9 8.042e-06 9.278e-06 1.093e-05 0.00% Castro::computeInitialDt() 2 5.583e-06 7.243e-06 8.52e-06 0.00% Amr::init() 1 2.058e-06 2.581e-06 3.81e-06 0.00% Amr::initialInit() 1 1.419e-06 1.77e-06 2.886e-06 0.00% Other 273 0.02208 0.02483 0.02699 0.63% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.291 4.292 4.293 100.00% Amr::coarseTimeStep() 10 2.962 2.962 2.962 69.01% Amr::timeStep() 10 2.95 2.95 2.95 68.73% Castro::advance() 10 2.934 2.934 2.935 68.36% Castro::subcycle_advance_ctu() 10 2.872 2.875 2.876 66.99% Castro::do_advance_ctu() 10 2.872 2.875 2.876 66.99% Castro::construct_ctu_hydro_source() 10 2.185 2.187 2.189 50.99% Amr::init() 1 1.285 1.285 1.286 29.96% Amr::writePlotFile() 2 1.17 1.17 1.17 27.26% UtilCreateCleanDirectory() 2 4.87e-07 0.09545 0.7636 17.79% VisMF::Write(FabArray) 2 0.007095 0.05588 0.3964 9.23% Gravity::make_radial_gravity() 21 0.2959 0.3031 0.3125 7.28% Gravity::get_new_grav_vector() 11 0.2 0.2008 0.202 4.70% AmrLevel::FillPatch() 41 0.1845 0.1912 0.201 4.68% Castro::construct_old_gravity() 10 0.172 0.1785 0.1863 4.34% Gravity::get_old_grav_vector() 10 0.171 0.1778 0.1858 4.33% Castro::construct_new_gravity() 10 0.1779 0.1786 0.1795 4.18% FillPatchIterator::Initialize 41 0.1535 0.162 0.1708 3.98% Castro::initialize_do_advance() 10 0.1499 0.158 0.1623 3.78% Amr::initialInit() 1 0.1546 0.1557 0.1563 3.64% FillPatchIterator::FillFromLevel0() 41 0.1137 0.1226 0.1307 3.04% FillPatchSingleLevel 41 0.1136 0.1225 0.1306 3.04% Amr::InitializeInit() 1 0.05545 0.09203 0.1292 3.01% Amr::defBaseLevel() 1 0.05545 0.09202 0.1292 3.01% Castro::clean_state() 62 0.108 0.112 0.1207 2.81% Castro::expand_state() 10 0.1016 0.1096 0.1134 2.64% check_for_negative_density() 10 0.03063 0.06873 0.1129 2.63% Castro::initData() 1 0.03902 0.07487 0.1115 2.60% Castro::estTimeStep() 21 0.02671 0.06622 0.1049 2.44% Amr::FinalizeInit() 1 0.02543 0.06363 0.1007 2.35% FabArray::ParallelCopy() 41 0.08341 0.09277 0.09851 2.29% Castro::do_old_sources() 10 0.08337 0.0865 0.09002 2.10% amrex::Copy() 193 0.06671 0.07066 0.07939 1.85% Castro::computeInitialDt() 2 0.00229 0.04011 0.07699 1.79% Castro::computeTemp() 63 0.06162 0.06512 0.07358 1.71% FabArray::ParallelCopy_finish() 41 0.03812 0.05535 0.06208 1.45% FabArray::setVal() 143 0.05352 0.05622 0.06132 1.43% Castro::initialize_advance() 10 0.05574 0.05689 0.06026 1.40% Castro::do_new_sources() 10 0.05206 0.05485 0.05811 1.35% Castro::reset_internal_energy(MultiFab) 63 0.04409 0.0471 0.05504 1.28% Castro::reset_internal_energy(Fab) 1008 0.04383 0.04685 0.05474 1.28% FabArray::ParallelCopy_nowait() 41 0.03564 0.03733 0.04518 1.05% Castro::normalize_species() 62 0.04129 0.04198 0.04277 1.00% StateDataPhysBCFunct::() 41 0.02764 0.02966 0.03201 0.75% StateData::FillBoundary(geom) 41 0.02751 0.02953 0.03188 0.74% Gravity::interpolate_monopole_grav() 21 0.02545 0.02596 0.02664 0.62% Castro::construct_new_source() 50 0.02439 0.02494 0.02618 0.61% Castro::post_init() 1 0.02291 0.02316 0.02328 0.54% Castro::construct_new_gravity_source() 10 0.01916 0.01982 0.02106 0.49% Castro::finalize_do_advance() 10 0.01426 0.01745 0.02017 0.47% Castro::post_timestep() 10 0.01541 0.01556 0.01568 0.37% Castro::Castro() 1 0.009771 0.01067 0.01144 0.27% Castro::check_for_nan() 20 0.008835 0.009783 0.01042 0.24% MultiFab::contains_nan() 20 0.008805 0.009758 0.0104 0.24% Castro::apply_source_to_state() 20 0.009194 0.009519 0.009999 0.23% FabArray::Saxpy() 20 0.009164 0.009481 0.009961 0.23% Castro::computeNewDt() 9 0.009411 0.009424 0.009432 0.22% FabArray::setDomainBndry() 41 0.008503 0.008948 0.009303 0.22% Castro::initMFs() 1 0.006284 0.006881 0.00755 0.18% Castro::construct_old_source() 50 0.006968 0.007164 0.007375 0.17% Other 273 0.03136 0.03545 0.03895 0.91% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 10 MiB 10 MiB 10 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 2 B 2 B 4 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 10 MiB 10 MiB 10 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8661 KiB 8666 KiB 8669 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 4988 KiB 4992 KiB 4993 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 7127 KiB 7132 KiB 7134 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 3338 KiB 3341 KiB 3343 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 163 KiB 170 KiB 177 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 10 KiB 51 KiB 335 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2046 KiB 2047 KiB 2048 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 175 KiB 179 KiB 185 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 31 KiB 34 KiB 35 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2027 KiB 2028 KiB 2028 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 59 KiB 60 KiB 60 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 51 KiB 53 KiB 55 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (25.12-23-gb647b95c5835) finalized