Initializing AMReX (25.12-26-g53dc0a470c5d)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.12-26-g53dc0a470c5d) initialized Starting run at 06:18:41 UTC on 2025-12-29. Successfully read inputs file ... Castro git describe: 25.12-10-g53019e1f0 AMReX git describe: 25.12-26-g53dc0a470 Microphysics git describe: 25.12-13-g277b76e4 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014187927 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.343334659 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.34783267 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.315656082 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.316572597 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.364583882 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.306374586 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297846597 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299107051 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.299616413 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.306804754 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007580256 seconds Ending run at 06:18:44 UTC on 2025-12-29. Run time = 3.384675888 Run time without initialization = 3.21036121 Average number of zones advanced per microsecond: 0.817 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3832 ... 3.3841 ... 3.3847 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1950 2.2501 2.3114 68.29% Gravity::make_radial_gravity() 21 0.2845 0.2931 0.3077 9.09% check_for_negative_density() 10 0.0434 0.1087 0.1628 4.81% Castro::initData() 1 0.0331 0.07029 0.1121 3.31% Castro::estTimeStep() 21 0.02454 0.07066 0.1109 3.28% FabArray::ParallelCopy_finish() 41 0.03672 0.05644 0.1002 2.96% amrex::Copy() 193 0.06336 0.08142 0.09571 2.83% FabArray::setVal() 143 0.05242 0.06684 0.07344 2.17% Castro::reset_internal_energy(Fab) 1008 0.04129 0.04401 0.0472 1.39% FabArray::ParallelCopy_nowait() 41 0.03415 0.03958 0.04095 1.21% Castro::normalize_species() 62 0.03717 0.0379 0.03953 1.17% FillPatchIterator::Initialize 41 0.02735 0.0328 0.03507 1.04% StateData::FillBoundary(geom) 41 0.02759 0.03082 0.03369 1.00% Gravity::interpolate_monopole_grav() 21 0.02586 0.02647 0.02781 0.82% Castro::construct_new_gravity_source() 10 0.02205 0.02311 0.02432 0.72% Castro::computeTemp() 63 0.01693 0.01755 0.01842 0.54% Castro::initialize_do_advance() 10 0.01153 0.01603 0.01742 0.51% Castro::initialize_advance() 10 0.005258 0.0108 0.01395 0.41% FabArray::Saxpy() 20 0.01036 0.01205 0.01288 0.38% VisMF::Write(FabArray) 2 0.008842 0.009595 0.01212 0.36% Amr::writePlotFile() 2 0.006933 0.009916 0.01192 0.35% MultiFab::contains_nan() 20 0.009277 0.01025 0.01153 0.34% FabArray::setDomainBndry() 41 0.008521 0.01004 0.01108 0.33% Castro::construct_old_gravity_source() 10 0.006333 0.008758 0.009342 0.28% Castro::initMFs() 1 0.006482 0.006973 0.008226 0.24% Castro::construct_new_source() 50 0.005434 0.006099 0.006463 0.19% main() 1 0.003703 0.004203 0.004567 0.13% Gravity::get_new_grav_vector() 11 0.002872 0.003356 0.003677 0.11% Amr::coarseTimeStep() 10 0.001191 0.001666 0.002622 0.08% Gravity::get_old_grav_vector() 10 0.001558 0.002036 0.0025 0.07% Castro::finalize_do_advance() 10 0.0005522 0.001102 0.001319 0.04% AmrLevel::FillPatch() 41 0.0007338 0.001025 0.001137 0.03% Amr::timeStep() 10 0.000128 0.0001789 0.0004571 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002545 0.0002698 0.0002851 0.01% Castro::do_advance_ctu() 10 0.0001426 0.0001642 0.0001875 0.01% Castro::clean_state() 62 0.000138 0.0001527 0.0001802 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001034 0.000117 0.0001345 0.00% Castro::Castro() 1 5.651e-05 8.569e-05 0.0001193 0.00% StateDataPhysBCFunct::() 41 8.088e-05 0.0001033 0.0001174 0.00% FabArray::ParallelCopy() 41 7.486e-05 9e-05 0.0001144 0.00% Castro::do_old_sources() 10 6.188e-05 8.155e-05 9.778e-05 0.00% Amr::FinalizeInit() 1 4.377e-06 1.664e-05 8.878e-05 0.00% FillPatchSingleLevel 41 6.226e-05 6.864e-05 7.803e-05 0.00% Castro::construct_old_source() 50 4.62e-05 6.017e-05 7.172e-05 0.00% Castro::do_new_sources() 10 4.642e-05 5.816e-05 7.086e-05 0.00% Castro::apply_source_to_state() 20 4.017e-05 5.035e-05 6.268e-05 0.00% Castro::subcycle_advance_ctu() 10 4.464e-05 5.302e-05 5.79e-05 0.00% Castro::advance() 10 3.223e-05 4.132e-05 5.016e-05 0.00% Amr::defBaseLevel() 1 3.735e-05 4.206e-05 4.879e-05 0.00% Castro::construct_old_gravity() 10 3.19e-05 3.674e-05 4.63e-05 0.00% Castro::construct_new_gravity() 10 2.942e-05 3.311e-05 4.162e-05 0.00% Castro::check_for_nan() 20 2.466e-05 2.796e-05 3.541e-05 0.00% Castro::expand_state() 10 1.893e-05 2.456e-05 2.739e-05 0.00% Castro::post_timestep() 10 1.286e-05 1.61e-05 2.526e-05 0.00% Castro::post_init() 1 1.403e-05 1.576e-05 1.787e-05 0.00% Castro::computeNewDt() 9 8.789e-06 9.31e-06 1.02e-05 0.00% Amr::InitializeInit() 1 5.278e-06 6.291e-06 1.008e-05 0.00% Castro::computeInitialDt() 2 5.54e-06 6.797e-06 9.06e-06 0.00% Amr::init() 1 1.718e-06 2.061e-06 2.366e-06 0.00% Amr::initialInit() 1 1.51e-06 1.843e-06 2.186e-06 0.00% Other 265 0.01588 0.01863 0.02086 0.62% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.383 3.384 3.385 100.00% Amr::coarseTimeStep() 10 3.198 3.198 3.198 94.49% Amr::timeStep() 10 3.185 3.186 3.187 94.15% Castro::advance() 10 3.171 3.172 3.172 93.72% Castro::subcycle_advance_ctu() 10 3.097 3.102 3.117 92.08% Castro::do_advance_ctu() 10 3.097 3.102 3.117 92.08% Castro::construct_ctu_hydro_source() 10 2.374 2.378 2.382 70.39% Gravity::make_radial_gravity() 21 0.3012 0.3093 0.3209 9.48% AmrLevel::FillPatch() 41 0.1821 0.2018 0.2238 6.61% Gravity::get_new_grav_vector() 11 0.2 0.2019 0.203 6.00% Castro::construct_old_gravity() 10 0.1859 0.1922 0.2017 5.96% Gravity::get_old_grav_vector() 10 0.1852 0.1916 0.201 5.94% FillPatchIterator::Initialize 41 0.1512 0.1702 0.1988 5.87% Castro::construct_new_gravity() 10 0.1789 0.1803 0.1812 5.35% Amr::init() 1 0.1729 0.1737 0.1739 5.14% check_for_negative_density() 10 0.0434 0.1087 0.1628 4.81% FillPatchIterator::FillFromLevel0() 41 0.1086 0.1273 0.1624 4.80% FillPatchSingleLevel 41 0.1084 0.1272 0.1623 4.79% Castro::initialize_do_advance() 10 0.1504 0.1566 0.162 4.79% Amr::initialInit() 1 0.158 0.1592 0.1595 4.71% FabArray::ParallelCopy() 41 0.07784 0.0962 0.1345 3.97% Amr::InitializeInit() 1 0.05407 0.09139 0.1331 3.93% Amr::defBaseLevel() 1 0.05406 0.09139 0.1331 3.93% Castro::expand_state() 10 0.09854 0.107 0.1186 3.50% Castro::initData() 1 0.03664 0.07386 0.1151 3.40% Castro::estTimeStep() 21 0.02454 0.07066 0.1109 3.28% Castro::clean_state() 62 0.1014 0.1051 0.1091 3.22% Amr::FinalizeInit() 1 0.02545 0.0678 0.1055 3.12% Castro::do_old_sources() 10 0.08882 0.09656 0.1024 3.02% FabArray::ParallelCopy_finish() 41 0.03672 0.05644 0.1002 2.96% amrex::Copy() 193 0.06336 0.08142 0.09571 2.83% Castro::computeInitialDt() 2 0.002325 0.04469 0.08229 2.43% FabArray::setVal() 143 0.05242 0.06684 0.07344 2.17% Castro::initialize_advance() 10 0.05113 0.06665 0.07122 2.10% Castro::computeTemp() 63 0.05851 0.06183 0.06571 1.94% Castro::do_new_sources() 10 0.05686 0.06056 0.06443 1.90% Castro::reset_internal_energy(MultiFab) 63 0.04155 0.04428 0.04748 1.40% Castro::reset_internal_energy(Fab) 1008 0.04129 0.04401 0.0472 1.39% FabArray::ParallelCopy_nowait() 41 0.03427 0.03968 0.04104 1.21% Castro::normalize_species() 62 0.03717 0.0379 0.03953 1.17% StateDataPhysBCFunct::() 41 0.02767 0.03093 0.0338 1.00% StateData::FillBoundary(geom) 41 0.02759 0.03082 0.03369 1.00% Castro::construct_new_source() 50 0.02796 0.02921 0.03072 0.91% Gravity::interpolate_monopole_grav() 21 0.02586 0.02647 0.02781 0.82% Castro::construct_new_gravity_source() 10 0.02205 0.02311 0.02432 0.72% Castro::post_init() 1 0.0226 0.02284 0.02299 0.68% Amr::writePlotFile() 2 0.02199 0.02215 0.02259 0.67% Castro::finalize_do_advance() 10 0.0142 0.01789 0.0215 0.64% Castro::post_timestep() 10 0.01404 0.01445 0.01511 0.45% Castro::apply_source_to_state() 20 0.0104 0.0121 0.01292 0.38% FabArray::Saxpy() 20 0.01036 0.01205 0.01288 0.38% VisMF::Write(FabArray) 2 0.008842 0.009595 0.01212 0.36% Castro::Castro() 1 0.01043 0.01094 0.01173 0.35% Castro::check_for_nan() 20 0.009305 0.01028 0.01155 0.34% MultiFab::contains_nan() 20 0.009277 0.01025 0.01153 0.34% FabArray::setDomainBndry() 41 0.008521 0.01004 0.01108 0.33% Castro::construct_old_source() 50 0.006379 0.008818 0.009405 0.28% Castro::construct_old_gravity_source() 10 0.006333 0.008758 0.009342 0.28% Castro::computeNewDt() 9 0.009182 0.0092 0.009213 0.27% Castro::initMFs() 1 0.006482 0.006973 0.008226 0.24% Other 265 0.02575 0.02984 0.0334 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 2 B 2 B 5 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8645 KiB 8653 KiB 8656 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6750 KiB 6756 KiB 6760 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 7119 KiB 7126 KiB 7128 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 4564 KiB 4570 KiB 4594 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 197 KiB 219 KiB 245 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2802 KiB 2805 KiB 2806 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 226 KiB 232 KiB 241 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 35 KiB 41 KiB 59 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2023 KiB 2025 KiB 2026 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 75 KiB 76 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 70 KiB 72 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (25.12-26-g53dc0a470c5d) finalized