Initializing AMReX (25.12-34-g879145c5f97a)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (25.12-34-g879145c5f97a) initialized Starting run at 22:55:02 UTC on 2026-01-05. Successfully read inputs file ... Castro git describe: 26.01 AMReX git describe: 25.12-34-g879145c5f Microphysics git describe: 26.01-3-gdf3029bf reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014742206 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.50714377 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.51225898 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.503654571 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.473440925 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.450246781 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.451581859 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.451719631 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.453343685 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.448338382 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.44838074 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007749188 seconds Ending run at 22:55:07 UTC on 2026-01-05. Run time = 4.885102569 Run time without initialization = 4.713335682 Average number of zones advanced per microsecond: 0.556 Average number of zones advanced per microsecond per rank: 0.070 TinyProfiler total time across processes [min...avg...max]: 4.8834 ... 4.8846 ... 4.8853 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 3.6867 3.7368 3.8176 78.15% Gravity::make_radial_gravity() 21 0.2617 0.27 0.2797 5.73% check_for_negative_density() 10 0.03096 0.1146 0.1663 3.40% Castro::estTimeStep() 21 0.03431 0.07089 0.1115 2.28% Castro::initData() 1 0.03511 0.06988 0.1055 2.16% StateData::FillBoundary(geom) 41 0.06926 0.07699 0.08421 1.72% amrex::Copy() 193 0.06504 0.07188 0.07857 1.61% FabArray::setVal() 143 0.05865 0.06437 0.0732 1.50% FabArray::ParallelCopy_finish() 41 0.03604 0.04722 0.06862 1.40% Castro::reset_internal_energy(Fab) 1008 0.04374 0.04587 0.04761 0.97% FabArray::ParallelCopy_nowait() 41 0.03532 0.03819 0.03955 0.81% Castro::normalize_species() 62 0.03674 0.03694 0.03717 0.76% FillPatchIterator::Initialize 41 0.02902 0.03177 0.03313 0.68% Gravity::interpolate_monopole_grav() 21 0.02586 0.02621 0.02666 0.55% Castro::construct_new_gravity_source() 10 0.02281 0.02412 0.02616 0.54% Castro::computeTemp() 63 0.01754 0.01814 0.01889 0.39% Castro::initialize_do_advance() 10 0.01294 0.0161 0.01875 0.38% Castro::enforce_min_density() 62 0.01258 0.01274 0.01297 0.27% VisMF::Write(FabArray) 2 0.008478 0.009664 0.01231 0.25% Castro::initialize_advance() 10 0.005838 0.009441 0.01195 0.24% FabArray::Saxpy() 20 0.009878 0.01118 0.01189 0.24% Amr::writePlotFile() 2 0.007462 0.0108 0.01184 0.24% MultiFab::contains_nan() 20 0.01046 0.01087 0.01129 0.23% FabArray::setDomainBndry() 41 0.008281 0.009977 0.01072 0.22% Castro::construct_new_source() 50 0.005306 0.005583 0.005785 0.12% main() 1 0.004118 0.004607 0.005014 0.10% Gravity::get_new_grav_vector() 11 0.003234 0.003743 0.004212 0.09% Amr::coarseTimeStep() 10 0.001321 0.001975 0.002454 0.05% Gravity::get_old_grav_vector() 10 0.001472 0.001897 0.002384 0.05% Castro::finalize_do_advance() 10 0.0006269 0.001224 0.001722 0.04% AmrLevel::FillPatch() 41 0.0007848 0.0009588 0.001185 0.02% Amr::timeStep() 10 0.0001317 0.0001745 0.0004047 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002498 0.0002595 0.0002679 0.01% Castro::do_advance_ctu() 10 0.0001406 0.0001546 0.0001771 0.00% Castro::clean_state() 62 0.0001329 0.0001449 0.000154 0.00% StateDataPhysBCFunct::() 41 9.799e-05 0.0001116 0.0001282 0.00% FillPatchIterator::FillFromLevel0() 41 8.889e-05 0.0001043 0.0001145 0.00% Castro::Castro() 1 5.161e-05 7.639e-05 0.0001144 0.00% FabArray::ParallelCopy() 41 7.779e-05 8.623e-05 9.41e-05 0.00% Castro::do_old_sources() 10 6.395e-05 8.016e-05 9.083e-05 0.00% Castro::construct_old_source() 50 4.479e-05 6.243e-05 8.555e-05 0.00% FillPatchSingleLevel 41 6.868e-05 7.333e-05 8.348e-05 0.00% Amr::FinalizeInit() 1 3.925e-06 1.322e-05 7.51e-05 0.00% Castro::apply_source_to_state() 20 3.95e-05 4.824e-05 6.959e-05 0.00% Castro::do_new_sources() 10 4.647e-05 5.478e-05 6.447e-05 0.00% Amr::defBaseLevel() 1 4.708e-05 5.293e-05 5.758e-05 0.00% Castro::advance() 10 3.512e-05 4.246e-05 5.506e-05 0.00% Castro::construct_old_gravity() 10 3.107e-05 3.696e-05 5.268e-05 0.00% Castro::subcycle_advance_ctu() 10 4.037e-05 4.634e-05 5.103e-05 0.00% Castro::construct_new_gravity() 10 3.057e-05 3.428e-05 4.101e-05 0.00% Castro::check_for_nan() 20 2.086e-05 2.302e-05 3.026e-05 0.00% Castro::expand_state() 10 1.812e-05 2.124e-05 2.442e-05 0.00% Castro::post_timestep() 10 1.43e-05 1.618e-05 1.792e-05 0.00% Castro::post_init() 1 7.944e-06 9.688e-06 1.121e-05 0.00% Castro::computeNewDt() 9 8.422e-06 9.403e-06 1.064e-05 0.00% Castro::computeInitialDt() 2 5.856e-06 6.566e-06 7.454e-06 0.00% Amr::InitializeInit() 1 5.237e-06 5.751e-06 6.784e-06 0.00% Amr::init() 1 1.595e-06 2.113e-06 2.353e-06 0.00% Amr::initialInit() 1 1.444e-06 1.78e-06 2.169e-06 0.00% Other 214 0.02387 0.02813 0.03185 0.65% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 4.883 4.885 4.885 100.00% Amr::coarseTimeStep() 10 4.701 4.701 4.701 96.22% Amr::timeStep() 10 4.686 4.686 4.687 95.94% Castro::advance() 10 4.67 4.671 4.671 95.62% Castro::subcycle_advance_ctu() 10 4.597 4.603 4.61 94.37% Castro::do_advance_ctu() 10 4.597 4.603 4.61 94.37% Castro::construct_ctu_hydro_source() 10 3.871 3.873 3.877 79.36% Gravity::make_radial_gravity() 21 0.2765 0.285 0.2944 6.03% AmrLevel::FillPatch() 41 0.2164 0.2328 0.247 5.06% FillPatchIterator::Initialize 41 0.189 0.2046 0.2169 4.44% Gravity::get_new_grav_vector() 11 0.2073 0.2103 0.2114 4.33% Castro::construct_new_gravity() 10 0.1846 0.1864 0.1877 3.84% Castro::construct_old_gravity() 10 0.1733 0.1802 0.1877 3.84% Gravity::get_old_grav_vector() 10 0.1728 0.1796 0.1872 3.83% Castro::initialize_do_advance() 10 0.1637 0.1722 0.1817 3.72% FillPatchIterator::FillFromLevel0() 41 0.1482 0.1629 0.1779 3.64% FillPatchSingleLevel 41 0.1481 0.1628 0.1779 3.64% Amr::init() 1 0.1706 0.1712 0.1715 3.51% check_for_negative_density() 10 0.03096 0.1146 0.1663 3.40% Amr::initialInit() 1 0.1546 0.1559 0.1568 3.21% Castro::expand_state() 10 0.1102 0.1201 0.1298 2.66% Amr::InitializeInit() 1 0.05602 0.091 0.1272 2.60% Amr::defBaseLevel() 1 0.05602 0.09099 0.1272 2.60% Castro::clean_state() 62 0.1105 0.1132 0.116 2.37% Castro::estTimeStep() 21 0.03431 0.07089 0.1115 2.28% Castro::initData() 1 0.03885 0.07361 0.109 2.23% FabArray::ParallelCopy() 41 0.07439 0.08559 0.1041 2.13% Amr::FinalizeInit() 1 0.02883 0.06486 0.1004 2.05% Castro::do_old_sources() 10 0.08757 0.09082 0.0925 1.89% StateDataPhysBCFunct::() 41 0.06937 0.0771 0.08432 1.73% StateData::FillBoundary(geom) 41 0.06926 0.07699 0.08421 1.72% amrex::Copy() 193 0.06504 0.07188 0.07857 1.61% Castro::computeInitialDt() 2 0.002744 0.0396 0.07466 1.53% FabArray::setVal() 143 0.05865 0.06437 0.0732 1.50% Castro::do_new_sources() 10 0.05941 0.06423 0.07076 1.45% Castro::initialize_advance() 10 0.05639 0.06412 0.0705 1.44% FabArray::ParallelCopy_finish() 41 0.03604 0.04722 0.06862 1.40% Castro::computeTemp() 63 0.06153 0.06428 0.06677 1.37% Castro::reset_internal_energy(MultiFab) 63 0.04399 0.04613 0.04787 0.98% Castro::reset_internal_energy(Fab) 1008 0.04374 0.04587 0.04761 0.97% FabArray::ParallelCopy_nowait() 41 0.03541 0.03828 0.03963 0.81% Castro::normalize_species() 62 0.03674 0.03694 0.03717 0.76% Castro::construct_new_source() 50 0.02823 0.0297 0.03173 0.65% Castro::finalize_do_advance() 10 0.01432 0.02154 0.02718 0.56% Gravity::interpolate_monopole_grav() 21 0.02586 0.02621 0.02666 0.55% Castro::construct_new_gravity_source() 10 0.02281 0.02412 0.02616 0.54% Castro::post_init() 1 0.02443 0.02509 0.02593 0.53% Amr::writePlotFile() 2 0.02237 0.0232 0.02392 0.49% Castro::post_timestep() 10 0.01537 0.0156 0.01606 0.33% Castro::enforce_min_density() 62 0.01258 0.01274 0.01297 0.27% VisMF::Write(FabArray) 2 0.008478 0.009664 0.01231 0.25% Castro::apply_source_to_state() 20 0.009918 0.01123 0.01194 0.24% FabArray::Saxpy() 20 0.009878 0.01118 0.01189 0.24% Castro::Castro() 1 0.01005 0.01085 0.01161 0.24% Castro::check_for_nan() 20 0.01049 0.0109 0.01131 0.23% MultiFab::contains_nan() 20 0.01046 0.01087 0.01129 0.23% Castro::computeNewDt() 9 0.01099 0.01099 0.011 0.23% FabArray::setDomainBndry() 41 0.008281 0.009977 0.01072 0.22% Castro::construct_old_source() 50 0.007087 0.008516 0.009005 0.18% Other 214 0.03373 0.0394 0.04492 0.92% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 17 MiB 17 MiB 17 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 2 B 2 B 3 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 17 MiB 17 MiB 17 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8665 KiB 8670 KiB 8673 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6876 KiB 6880 KiB 6883 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 7129 KiB 7134 KiB 7135 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 4696 KiB 4702 KiB 4711 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 155 KiB 169 KiB 181 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 10 KiB 11 KiB 14 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2862 KiB 2864 KiB 2865 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 144 KiB 148 KiB 153 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 23 KiB 27 KiB 34 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2027 KiB 2029 KiB 2029 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 54 KiB 55 KiB 55 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 45 KiB 47 KiB 49 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (25.12-34-g879145c5f97a) finalized