Initializing AMReX (26.01-4-g2dc1f6ab47fa)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (26.01-4-g2dc1f6ab47fa) initialized Starting run at 16:15:08 UTC on 2026-01-07. Successfully read inputs file ... Castro git describe: 26.01-1-g5c9bc618f AMReX git describe: 26.01-4-g2dc1f6ab4 Microphysics git describe: 26.01-4-g935d36be reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014670641 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.35116936 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.324013515 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.36501712 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.335770624 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.374536184 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.300345142 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.297483874 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.297478634 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.297797266 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298224635 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.008086232 seconds Ending run at 16:15:12 UTC on 2026-01-07. Run time = 3.424753283 Run time without initialization = 3.255334119 Average number of zones advanced per microsecond: 0.805 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.4226 ... 3.4239 ... 3.4248 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2198 2.2549 2.2909 66.89% Gravity::make_radial_gravity() 21 0.297 0.3052 0.3149 9.19% check_for_negative_density() 10 0.06879 0.1058 0.1441 4.21% FabArray::ParallelCopy_finish() 41 0.04109 0.07238 0.1122 3.28% Castro::estTimeStep() 21 0.03574 0.07186 0.1104 3.22% Castro::initData() 1 0.03343 0.06841 0.105 3.07% amrex::Copy() 193 0.06252 0.07812 0.08731 2.55% FabArray::setVal() 143 0.05571 0.0688 0.08274 2.42% Castro::reset_internal_energy(Fab) 1008 0.04478 0.04616 0.0474 1.38% FabArray::ParallelCopy_nowait() 41 0.03193 0.03846 0.04036 1.18% Castro::normalize_species() 62 0.03661 0.03729 0.03878 1.13% FillPatchIterator::Initialize 41 0.02737 0.03292 0.03798 1.11% StateData::FillBoundary(geom) 41 0.02796 0.03048 0.03252 0.95% Gravity::interpolate_monopole_grav() 21 0.02606 0.02654 0.02706 0.79% Castro::construct_new_gravity_source() 10 0.02048 0.02347 0.02468 0.72% Castro::initialize_do_advance() 10 0.01134 0.01701 0.02284 0.67% Castro::computeTemp() 63 0.0178 0.01814 0.01864 0.54% MultiFab::contains_nan() 20 0.009304 0.01093 0.01354 0.40% Castro::initialize_advance() 10 0.005383 0.0101 0.01347 0.39% Amr::writePlotFile() 2 0.00769 0.01073 0.01346 0.39% Amr::coarseTimeStep() 10 0.001433 0.01058 0.01307 0.38% FabArray::Saxpy() 20 0.01034 0.01187 0.01271 0.37% VisMF::Write(FabArray) 2 0.008455 0.009753 0.01241 0.36% FabArray::setDomainBndry() 41 0.008613 0.009891 0.01074 0.31% Castro::construct_old_gravity_source() 10 0.006045 0.008626 0.009299 0.27% Castro::initMFs() 1 0.006632 0.007123 0.008847 0.26% Castro::enforce_min_density() 62 0.00553 0.005883 0.00636 0.19% Castro::construct_new_source() 50 0.00541 0.005835 0.006214 0.18% main() 1 0.003945 0.00427 0.004728 0.14% Gravity::get_new_grav_vector() 11 0.002882 0.003552 0.003922 0.11% Gravity::get_old_grav_vector() 10 0.001669 0.001952 0.002263 0.07% Castro::finalize_do_advance() 10 0.0005708 0.001187 0.001369 0.04% AmrLevel::FillPatch() 41 0.0007707 0.001033 0.001279 0.04% Amr::timeStep() 10 0.0001393 0.0001909 0.0004375 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002582 0.0002759 0.0002959 0.01% Castro::do_advance_ctu() 10 0.0001411 0.0001645 0.0001913 0.01% StateDataPhysBCFunct::() 41 0.0001059 0.0001247 0.0001791 0.01% Castro::clean_state() 62 0.0001391 0.0001504 0.0001685 0.00% FillPatchIterator::FillFromLevel0() 41 9.94e-05 0.0001078 0.0001148 0.00% FabArray::ParallelCopy() 41 8.157e-05 8.993e-05 0.0001083 0.00% Castro::do_old_sources() 10 7.076e-05 8.353e-05 9.584e-05 0.00% Castro::Castro() 1 5.49e-05 7.762e-05 9.237e-05 0.00% Amr::FinalizeInit() 1 3.291e-06 1.516e-05 8.868e-05 0.00% FillPatchSingleLevel 41 6.732e-05 7.515e-05 8.25e-05 0.00% Castro::construct_old_source() 50 4.658e-05 5.828e-05 6.657e-05 0.00% Castro::subcycle_advance_ctu() 10 4.244e-05 5.092e-05 6.591e-05 0.00% Castro::do_new_sources() 10 4.837e-05 5.747e-05 6.585e-05 0.00% Amr::defBaseLevel() 1 4.01e-05 4.342e-05 5.103e-05 0.00% Castro::apply_source_to_state() 20 3.594e-05 4.647e-05 5.073e-05 0.00% Castro::computeNewDt() 9 8.422e-06 1.469e-05 5.073e-05 0.00% Castro::construct_old_gravity() 10 3.256e-05 4.028e-05 4.688e-05 0.00% Castro::advance() 10 3.508e-05 3.92e-05 4.609e-05 0.00% Castro::construct_new_gravity() 10 2.799e-05 3.471e-05 4.161e-05 0.00% Castro::expand_state() 10 1.915e-05 2.483e-05 3.671e-05 0.00% Castro::check_for_nan() 20 2.15e-05 2.388e-05 2.707e-05 0.00% Castro::post_timestep() 10 1.604e-05 1.838e-05 2.069e-05 0.00% Castro::post_init() 1 1.432e-05 1.655e-05 1.934e-05 0.00% Castro::computeInitialDt() 2 5.949e-06 6.922e-06 8.63e-06 0.00% Amr::InitializeInit() 1 5.286e-06 5.709e-06 6.298e-06 0.00% Amr::init() 1 1.924e-06 2.228e-06 2.703e-06 0.00% Amr::initialInit() 1 1.281e-06 1.815e-06 2.42e-06 0.00% Other 203 0.01027 0.01289 0.01478 0.43% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.423 3.424 3.425 100.00% Amr::coarseTimeStep() 10 3.243 3.243 3.243 94.68% Amr::timeStep() 10 3.216 3.218 3.227 94.24% Castro::advance() 10 3.201 3.203 3.209 93.70% Castro::subcycle_advance_ctu() 10 3.119 3.132 3.145 91.84% Castro::do_advance_ctu() 10 3.119 3.132 3.145 91.84% Castro::construct_ctu_hydro_source() 10 2.379 2.38 2.383 69.59% Gravity::make_radial_gravity() 21 0.3126 0.3211 0.327 9.55% AmrLevel::FillPatch() 41 0.1904 0.2168 0.235 6.86% Gravity::get_new_grav_vector() 11 0.2117 0.2127 0.2136 6.24% FillPatchIterator::Initialize 41 0.1587 0.1846 0.209 6.10% Castro::construct_old_gravity() 10 0.1822 0.1908 0.1958 5.72% Gravity::get_old_grav_vector() 10 0.1811 0.1899 0.1946 5.68% Castro::initialize_do_advance() 10 0.1661 0.1807 0.1913 5.59% Castro::construct_new_gravity() 10 0.1894 0.1901 0.1907 5.57% FillPatchIterator::FillFromLevel0() 41 0.1103 0.1418 0.1726 5.04% FillPatchSingleLevel 41 0.1102 0.1417 0.1725 5.04% Amr::init() 1 0.1676 0.1687 0.169 4.94% Amr::initialInit() 1 0.1522 0.1538 0.1541 4.50% FabArray::ParallelCopy() 41 0.081 0.111 0.1443 4.21% Castro::expand_state() 10 0.109 0.129 0.1442 4.21% check_for_negative_density() 10 0.06879 0.1058 0.1441 4.21% Amr::InitializeInit() 1 0.05494 0.0901 0.1267 3.70% Amr::defBaseLevel() 1 0.05494 0.0901 0.1267 3.70% FabArray::ParallelCopy_finish() 41 0.04109 0.07238 0.1122 3.28% Castro::clean_state() 62 0.1049 0.1071 0.1107 3.23% Castro::estTimeStep() 21 0.03574 0.07186 0.1104 3.22% Castro::initData() 1 0.03732 0.07204 0.1082 3.16% Amr::FinalizeInit() 1 0.02554 0.06365 0.09907 2.89% Castro::do_old_sources() 10 0.08972 0.09298 0.09499 2.77% amrex::Copy() 193 0.06252 0.07812 0.08731 2.55% FabArray::setVal() 143 0.05571 0.0688 0.08274 2.42% Castro::initialize_advance() 10 0.0523 0.06759 0.07945 2.32% Castro::computeInitialDt() 2 0.002243 0.03988 0.07517 2.19% Castro::computeTemp() 63 0.06305 0.06458 0.0662 1.93% Castro::do_new_sources() 10 0.05404 0.0611 0.06404 1.87% Castro::reset_internal_energy(MultiFab) 63 0.04505 0.04644 0.04768 1.39% Castro::reset_internal_energy(Fab) 1008 0.04478 0.04616 0.0474 1.38% FabArray::ParallelCopy_nowait() 41 0.03201 0.03854 0.04044 1.18% Castro::normalize_species() 62 0.03661 0.03729 0.03878 1.13% StateDataPhysBCFunct::() 41 0.0281 0.03061 0.03265 0.95% StateData::FillBoundary(geom) 41 0.02796 0.03048 0.03252 0.95% Castro::construct_new_source() 50 0.02589 0.02931 0.03042 0.89% Gravity::interpolate_monopole_grav() 21 0.02606 0.02654 0.02706 0.79% Castro::finalize_do_advance() 10 0.01645 0.02062 0.02625 0.77% Castro::construct_new_gravity_source() 10 0.02048 0.02347 0.02468 0.72% Castro::post_init() 1 0.02328 0.02353 0.02368 0.69% Amr::writePlotFile() 2 0.02297 0.02309 0.02357 0.69% Castro::post_timestep() 10 0.01416 0.01494 0.01807 0.53% Castro::check_for_nan() 20 0.009326 0.01096 0.01356 0.40% MultiFab::contains_nan() 20 0.009304 0.01093 0.01354 0.40% Castro::apply_source_to_state() 20 0.01038 0.01192 0.01276 0.37% FabArray::Saxpy() 20 0.01034 0.01187 0.01271 0.37% Castro::computeNewDt() 9 0.01254 0.01257 0.01258 0.37% VisMF::Write(FabArray) 2 0.008455 0.009753 0.01241 0.36% Castro::Castro() 1 0.01075 0.01124 0.01219 0.36% FabArray::setDomainBndry() 41 0.008613 0.009891 0.01074 0.31% Castro::construct_old_source() 50 0.006092 0.008684 0.009366 0.27% Castro::construct_old_gravity_source() 10 0.006045 0.008626 0.009299 0.27% Castro::initMFs() 1 0.006632 0.007123 0.008847 0.26% Castro::enforce_min_density() 62 0.00553 0.005883 0.00636 0.19% Other 203 0.02003 0.02459 0.02916 0.85% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 3 B 3 B 6 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8643 KiB 8652 KiB 8655 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6763 KiB 6770 KiB 6774 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 7117 KiB 7125 KiB 7127 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 4536 KiB 4560 KiB 4581 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 210 KiB 244 KiB 269 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 13 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2795 KiB 2800 KiB 2806 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 232 KiB 238 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 36 KiB 52 KiB 70 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2023 KiB 2025 KiB 2026 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 79 KiB 79 KiB 80 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 67 KiB 71 KiB 72 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (26.01-4-g2dc1f6ab47fa) finalized