Initializing AMReX (26.01-4-g2dc1f6ab47fa)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (26.01-4-g2dc1f6ab47fa) initialized Starting run at 06:17:12 UTC on 2026-01-07. Successfully read inputs file ... Castro git describe: 26.01 AMReX git describe: 26.01-4-g2dc1f6ab4 Microphysics git describe: 26.01-3-gdf3029bf reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014901217 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.355480097 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.325228199 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.339817505 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.321242972 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.361949582 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.30535752 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.298212523 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299452 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.300135786 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.30077793 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007632548 seconds Ending run at 06:17:16 UTC on 2026-01-07. Run time = 3.393749787 Run time without initialization = 3.220219061 Average number of zones advanced per microsecond: 0.814 Average number of zones advanced per microsecond per rank: 0.102 TinyProfiler total time across processes [min...avg...max]: 3.3923 ... 3.3931 ... 3.3938 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1883 2.2511 2.3213 68.40% Gravity::make_radial_gravity() 21 0.2789 0.2914 0.3063 9.03% check_for_negative_density() 10 0.03901 0.1119 0.1771 5.22% Castro::initData() 1 0.03312 0.06963 0.1105 3.26% Castro::estTimeStep() 21 0.02294 0.06973 0.1081 3.19% FabArray::ParallelCopy_finish() 41 0.04146 0.06055 0.09593 2.83% amrex::Copy() 193 0.06302 0.08101 0.09293 2.74% FabArray::setVal() 143 0.05703 0.06776 0.0738 2.17% FabArray::ParallelCopy_nowait() 41 0.03722 0.04346 0.05369 1.58% Castro::reset_internal_energy(Fab) 1008 0.03996 0.04353 0.04587 1.35% FillPatchIterator::Initialize 41 0.02703 0.03327 0.03983 1.17% Castro::normalize_species() 62 0.03638 0.03707 0.03819 1.13% StateData::FillBoundary(geom) 41 0.02683 0.03065 0.03315 0.98% Gravity::interpolate_monopole_grav() 21 0.02539 0.02584 0.02624 0.77% Castro::construct_new_gravity_source() 10 0.02077 0.02278 0.0241 0.71% Castro::initialize_do_advance() 10 0.01145 0.01659 0.02298 0.68% Castro::computeTemp() 63 0.01616 0.01742 0.01839 0.54% Castro::initialize_advance() 10 0.005394 0.01065 0.01421 0.42% VisMF::Write(FabArray) 2 0.009341 0.009971 0.01342 0.40% FabArray::Saxpy() 20 0.01048 0.012 0.01291 0.38% FabArray::setDomainBndry() 41 0.007195 0.0098 0.01186 0.35% MultiFab::contains_nan() 20 0.009403 0.01017 0.01085 0.32% Amr::writePlotFile() 2 0.007244 0.009794 0.01027 0.30% Castro::construct_old_gravity_source() 10 0.006125 0.008676 0.009238 0.27% Castro::initMFs() 1 0.006636 0.007175 0.008066 0.24% Castro::construct_new_source() 50 0.005649 0.006073 0.00646 0.19% main() 1 0.003716 0.004193 0.004296 0.13% Amr::coarseTimeStep() 10 0.001476 0.002887 0.003952 0.12% Gravity::get_new_grav_vector() 11 0.002732 0.003322 0.003669 0.11% Gravity::get_old_grav_vector() 10 0.001556 0.00197 0.002556 0.08% Castro::finalize_do_advance() 10 0.0005169 0.001165 0.001485 0.04% AmrLevel::FillPatch() 41 0.0007132 0.00123 0.001397 0.04% Castro::construct_old_gravity() 10 4.143e-05 9.987e-05 0.0004437 0.01% Amr::timeStep() 10 0.0001336 0.0001793 0.0003935 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002565 0.0002671 0.0002788 0.01% Castro::do_advance_ctu() 10 0.0001428 0.0001757 0.0002075 0.01% Castro::clean_state() 62 0.0001399 0.0001539 0.0001673 0.00% StateDataPhysBCFunct::() 41 9.735e-05 0.0001106 0.0001335 0.00% FillPatchIterator::FillFromLevel0() 41 0.000103 0.0001145 0.0001262 0.00% FabArray::ParallelCopy() 41 7.98e-05 9.107e-05 0.0001011 0.00% Castro::do_old_sources() 10 6.511e-05 8.909e-05 9.927e-05 0.00% Castro::Castro() 1 5.449e-05 7.034e-05 9.424e-05 0.00% FillPatchSingleLevel 41 6.734e-05 7.429e-05 8.529e-05 0.00% Castro::do_new_sources() 10 5.267e-05 6.09e-05 7.316e-05 0.00% Castro::construct_old_source() 50 4.284e-05 6.228e-05 7.253e-05 0.00% Castro::apply_source_to_state() 20 4.193e-05 5.014e-05 6.9e-05 0.00% Amr::FinalizeInit() 1 4.271e-06 1.264e-05 6.815e-05 0.00% Castro::subcycle_advance_ctu() 10 4.783e-05 5.18e-05 5.979e-05 0.00% Amr::defBaseLevel() 1 3.526e-05 4.309e-05 4.931e-05 0.00% Castro::advance() 10 3.595e-05 4.115e-05 4.776e-05 0.00% Castro::construct_new_gravity() 10 3.115e-05 3.814e-05 4.43e-05 0.00% Castro::expand_state() 10 2.11e-05 2.735e-05 3.368e-05 0.00% Castro::check_for_nan() 20 2.419e-05 2.734e-05 3.115e-05 0.00% Castro::post_timestep() 10 1.528e-05 1.747e-05 2.662e-05 0.00% Castro::post_init() 1 1.498e-05 1.759e-05 2.207e-05 0.00% Castro::computeNewDt() 9 8.428e-06 9.568e-06 1.095e-05 0.00% Castro::computeInitialDt() 2 5.726e-06 6.852e-06 8.093e-06 0.00% Amr::InitializeInit() 1 5.514e-06 6.261e-06 6.93e-06 0.00% Amr::init() 1 1.725e-06 2.268e-06 3.354e-06 0.00% Amr::initialInit() 1 1.609e-06 2.051e-06 2.931e-06 0.00% Other 265 0.01491 0.01839 0.02082 0.61% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.392 3.393 3.394 100.00% Amr::coarseTimeStep() 10 3.208 3.208 3.208 94.54% Amr::timeStep() 10 3.194 3.195 3.196 94.18% Castro::advance() 10 3.18 3.181 3.181 93.73% Castro::subcycle_advance_ctu() 10 3.105 3.111 3.125 92.08% Castro::do_advance_ctu() 10 3.105 3.111 3.125 92.08% Castro::construct_ctu_hydro_source() 10 2.379 2.382 2.385 70.28% Gravity::make_radial_gravity() 21 0.2954 0.3073 0.3187 9.39% AmrLevel::FillPatch() 41 0.1885 0.2127 0.2263 6.67% Gravity::get_new_grav_vector() 11 0.1988 0.2002 0.2019 5.95% FillPatchIterator::Initialize 41 0.1584 0.1782 0.2005 5.91% Castro::construct_old_gravity() 10 0.1781 0.1883 0.1986 5.85% Gravity::get_old_grav_vector() 10 0.1769 0.1873 0.1976 5.82% Castro::construct_new_gravity() 10 0.1769 0.1779 0.1792 5.28% check_for_negative_density() 10 0.03901 0.1119 0.1771 5.22% Castro::initialize_do_advance() 10 0.1622 0.1712 0.1763 5.20% Amr::init() 1 0.1722 0.1726 0.1732 5.10% FillPatchIterator::FillFromLevel0() 41 0.1211 0.1351 0.1663 4.90% FillPatchSingleLevel 41 0.121 0.135 0.1661 4.90% Amr::initialInit() 1 0.1572 0.1579 0.1587 4.67% FabArray::ParallelCopy() 41 0.09277 0.1042 0.1391 4.10% Amr::InitializeInit() 1 0.05409 0.09048 0.1318 3.88% Amr::defBaseLevel() 1 0.05409 0.09047 0.1318 3.88% Castro::expand_state() 10 0.1122 0.1214 0.1307 3.85% Castro::initData() 1 0.03682 0.07322 0.1137 3.35% Castro::estTimeStep() 21 0.02294 0.06973 0.1081 3.19% Castro::clean_state() 62 0.0981 0.1035 0.1075 3.17% Amr::FinalizeInit() 1 0.02593 0.06745 0.1046 3.08% Castro::do_old_sources() 10 0.08653 0.09723 0.1014 2.99% FabArray::ParallelCopy_finish() 41 0.04146 0.06055 0.09593 2.83% amrex::Copy() 193 0.06302 0.08101 0.09293 2.74% Castro::computeInitialDt() 2 0.002269 0.0439 0.08089 2.38% FabArray::setVal() 143 0.05703 0.06776 0.0738 2.17% Castro::initialize_advance() 10 0.05164 0.06659 0.07189 2.12% Castro::do_new_sources() 10 0.05505 0.06009 0.06497 1.91% Castro::computeTemp() 63 0.05639 0.06122 0.06452 1.90% FabArray::ParallelCopy_nowait() 41 0.03734 0.04355 0.05378 1.58% Castro::reset_internal_energy(MultiFab) 63 0.04022 0.0438 0.04613 1.36% Castro::reset_internal_energy(Fab) 1008 0.03996 0.04353 0.04587 1.35% Castro::normalize_species() 62 0.03638 0.03707 0.03819 1.13% StateDataPhysBCFunct::() 41 0.02694 0.03076 0.03325 0.98% StateData::FillBoundary(geom) 41 0.02683 0.03065 0.03315 0.98% Castro::construct_new_source() 50 0.02642 0.02885 0.03056 0.90% Gravity::interpolate_monopole_grav() 21 0.02539 0.02584 0.02624 0.77% Castro::construct_new_gravity_source() 10 0.02077 0.02278 0.0241 0.71% Castro::post_init() 1 0.02269 0.02325 0.02345 0.69% Amr::writePlotFile() 2 0.02226 0.02237 0.02277 0.67% Castro::finalize_do_advance() 10 0.01232 0.01748 0.02221 0.65% Castro::post_timestep() 10 0.01313 0.01406 0.01496 0.44% VisMF::Write(FabArray) 2 0.009341 0.009971 0.01342 0.40% Castro::apply_source_to_state() 20 0.01052 0.01205 0.01296 0.38% FabArray::Saxpy() 20 0.01048 0.012 0.01291 0.38% Castro::Castro() 1 0.01018 0.01093 0.01196 0.35% FabArray::setDomainBndry() 41 0.007195 0.0098 0.01186 0.35% Castro::check_for_nan() 20 0.00943 0.0102 0.01088 0.32% MultiFab::contains_nan() 20 0.009403 0.01017 0.01085 0.32% Castro::computeNewDt() 9 0.009529 0.009537 0.009542 0.28% Castro::construct_old_source() 50 0.006168 0.008739 0.009302 0.27% Castro::construct_old_gravity_source() 10 0.006125 0.008676 0.009238 0.27% Castro::initMFs() 1 0.006636 0.007175 0.008066 0.24% Other 265 0.02487 0.02934 0.03316 0.98% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 2 B 4 B 12 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8642 KiB 8652 KiB 8656 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6755 KiB 6758 KiB 6759 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 7118 KiB 7126 KiB 7128 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 4563 KiB 4570 KiB 4587 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 212 KiB 238 KiB 256 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2802 KiB 2805 KiB 2806 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 221 KiB 230 KiB 238 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 42 KiB 47 KiB 62 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2023 KiB 2025 KiB 2026 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 75 KiB 75 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 66 KiB 70 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (26.01-4-g2dc1f6ab47fa) finalized