Initializing AMReX (26.01-7-gc2a1abe7911b)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (26.01-7-gc2a1abe7911b) initialized Starting run at 06:33:16 UTC on 2026-01-09. Successfully read inputs file ... Castro git describe: 26.01-1-ge6f237912 AMReX git describe: 26.01-7-gc2a1abe79 Microphysics git describe: 26.01-4-g935d36be reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.015046246 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.355255652 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.34974228 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.314626271 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.316348728 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.379611467 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.308403174 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.299581978 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.298934437 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.29755865 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.298067935 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007583382 seconds Ending run at 06:33:20 UTC on 2026-01-09. Run time = 3.393332197 Run time without initialization = 3.231134069 Average number of zones advanced per microsecond: 0.811 Average number of zones advanced per microsecond per rank: 0.101 TinyProfiler total time across processes [min...avg...max]: 3.3922 ... 3.3929 ... 3.3934 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.2074 2.2546 2.2965 67.68% Gravity::make_radial_gravity() 21 0.2841 0.299 0.3141 9.26% check_for_negative_density() 10 0.07069 0.115 0.1617 4.76% FabArray::ParallelCopy_finish() 41 0.03931 0.0636 0.09904 2.92% Castro::initData() 1 0.03326 0.06729 0.09897 2.92% Castro::estTimeStep() 21 0.02418 0.06081 0.09685 2.85% amrex::Copy() 193 0.06345 0.07935 0.09373 2.76% FabArray::setVal() 143 0.05469 0.06767 0.07475 2.20% Castro::reset_internal_energy(Fab) 1008 0.04081 0.04496 0.04706 1.39% FabArray::ParallelCopy_nowait() 41 0.03453 0.03876 0.04046 1.19% Castro::normalize_species() 62 0.03642 0.03677 0.03718 1.10% FillPatchIterator::Initialize 41 0.02761 0.03222 0.03547 1.05% StateData::FillBoundary(geom) 41 0.02814 0.03088 0.03524 1.04% Gravity::interpolate_monopole_grav() 21 0.02542 0.02625 0.02843 0.84% Castro::construct_new_gravity_source() 10 0.02237 0.02336 0.02548 0.75% Castro::computeTemp() 63 0.01677 0.01793 0.01852 0.55% Castro::initialize_do_advance() 10 0.01159 0.01626 0.01776 0.52% Castro::initialize_advance() 10 0.005324 0.01084 0.01396 0.41% Amr::writePlotFile() 2 0.007218 0.01039 0.01296 0.38% FabArray::Saxpy() 20 0.01056 0.01205 0.01284 0.38% VisMF::Write(FabArray) 2 0.008686 0.009915 0.01274 0.38% MultiFab::contains_nan() 20 0.009806 0.01058 0.01159 0.34% FabArray::setDomainBndry() 41 0.007664 0.009687 0.01061 0.31% Castro::construct_old_gravity_source() 10 0.006553 0.008671 0.009278 0.27% Castro::initMFs() 1 0.006533 0.006697 0.007256 0.21% Castro::construct_new_source() 50 0.005589 0.006066 0.006475 0.19% main() 1 0.003931 0.00439 0.004817 0.14% Gravity::get_new_grav_vector() 11 0.002936 0.003444 0.003788 0.11% Gravity::get_old_grav_vector() 10 0.001568 0.002033 0.002481 0.07% Amr::coarseTimeStep() 10 0.001041 0.001417 0.001931 0.06% Castro::finalize_do_advance() 10 0.0006163 0.001116 0.001301 0.04% AmrLevel::FillPatch() 41 0.0009089 0.001059 0.001271 0.04% Amr::timeStep() 10 0.0001357 0.0001894 0.0004631 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002555 0.000273 0.0002981 0.01% Castro::do_advance_ctu() 10 0.0001623 0.000179 0.000187 0.01% Castro::clean_state() 62 0.0001391 0.000156 0.0001742 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001061 0.0001192 0.000143 0.00% StateDataPhysBCFunct::() 41 0.0001085 0.0001206 0.000142 0.00% Castro::Castro() 1 8.525e-05 0.0001032 0.0001286 0.00% Castro::do_old_sources() 10 7.81e-05 9.131e-05 0.0001072 0.00% FabArray::ParallelCopy() 41 8.633e-05 9.182e-05 0.0001044 0.00% Amr::FinalizeInit() 1 3.675e-06 1.55e-05 9.234e-05 0.00% FillPatchSingleLevel 41 7.147e-05 7.581e-05 7.914e-05 0.00% Castro::do_new_sources() 10 5.784e-05 6.249e-05 7.19e-05 0.00% Castro::construct_old_source() 50 5.333e-05 6.212e-05 6.965e-05 0.00% Castro::apply_source_to_state() 20 4.11e-05 4.944e-05 6.156e-05 0.00% Castro::subcycle_advance_ctu() 10 4.727e-05 5.359e-05 5.886e-05 0.00% Castro::construct_old_gravity() 10 3.363e-05 4.393e-05 5.539e-05 0.00% Castro::advance() 10 3.752e-05 4.28e-05 5.498e-05 0.00% Castro::construct_new_gravity() 10 3.276e-05 3.959e-05 4.863e-05 0.00% Amr::defBaseLevel() 1 3.496e-05 4.071e-05 4.459e-05 0.00% Castro::check_for_nan() 20 2.36e-05 2.75e-05 3.233e-05 0.00% Castro::expand_state() 10 2.312e-05 2.657e-05 3.213e-05 0.00% Castro::post_init() 1 1.478e-05 1.964e-05 3.209e-05 0.00% Castro::computeInitialDt() 2 5.571e-06 8.984e-06 2.334e-05 0.00% Castro::post_timestep() 10 1.408e-05 1.654e-05 1.787e-05 0.00% Castro::computeNewDt() 9 8.19e-06 9.645e-06 1.092e-05 0.00% Amr::InitializeInit() 1 5.419e-06 6.39e-06 1.045e-05 0.00% Amr::init() 1 1.716e-06 2.315e-06 3.684e-06 0.00% Amr::initialInit() 1 1.433e-06 1.957e-06 2.668e-06 0.00% Other 265 0.01572 0.01787 0.01951 0.57% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.392 3.393 3.393 100.00% Amr::coarseTimeStep() 10 3.219 3.219 3.219 94.86% Amr::timeStep() 10 3.206 3.207 3.207 94.52% Castro::advance() 10 3.192 3.192 3.193 94.09% Castro::subcycle_advance_ctu() 10 3.118 3.122 3.136 92.42% Castro::do_advance_ctu() 10 3.118 3.122 3.136 92.42% Castro::construct_ctu_hydro_source() 10 2.386 2.389 2.393 70.52% Gravity::make_radial_gravity() 21 0.2994 0.3149 0.3277 9.66% AmrLevel::FillPatch() 41 0.1824 0.2067 0.2273 6.70% Gravity::get_new_grav_vector() 11 0.2028 0.2049 0.206 6.07% Castro::construct_old_gravity() 10 0.1808 0.1949 0.2058 6.06% Gravity::get_old_grav_vector() 10 0.18 0.1943 0.2052 6.05% FillPatchIterator::Initialize 41 0.1518 0.1757 0.1987 5.85% Castro::construct_new_gravity() 10 0.1807 0.1822 0.1833 5.40% Castro::initialize_do_advance() 10 0.1516 0.159 0.1721 5.07% FillPatchIterator::FillFromLevel0() 41 0.113 0.1337 0.1634 4.81% FillPatchSingleLevel 41 0.1129 0.1336 0.1632 4.81% Amr::init() 1 0.1615 0.1618 0.1619 4.77% check_for_negative_density() 10 0.07069 0.115 0.1617 4.76% Amr::initialInit() 1 0.1458 0.1466 0.1468 4.33% FabArray::ParallelCopy() 41 0.07971 0.1026 0.1338 3.94% Amr::InitializeInit() 1 0.05365 0.08815 0.1201 3.54% Amr::defBaseLevel() 1 0.05364 0.08814 0.1201 3.54% Castro::expand_state() 10 0.1004 0.1087 0.12 3.54% Castro::clean_state() 62 0.1003 0.1052 0.1084 3.19% Castro::do_old_sources() 10 0.09079 0.09911 0.105 3.10% Castro::initData() 1 0.03723 0.07103 0.1027 3.03% FabArray::ParallelCopy_finish() 41 0.03931 0.0636 0.09904 2.92% Castro::estTimeStep() 21 0.02418 0.06081 0.09685 2.85% amrex::Copy() 193 0.06345 0.07935 0.09373 2.76% Amr::FinalizeInit() 1 0.02664 0.05844 0.09309 2.74% FabArray::setVal() 143 0.05469 0.06767 0.07475 2.20% Castro::initialize_advance() 10 0.05259 0.06706 0.07137 2.10% Castro::computeInitialDt() 2 0.002324 0.03423 0.0688 2.03% Castro::do_new_sources() 10 0.05739 0.06097 0.06671 1.97% Castro::computeTemp() 63 0.05783 0.06316 0.06588 1.94% Castro::reset_internal_energy(MultiFab) 63 0.04107 0.04523 0.04736 1.40% Castro::reset_internal_energy(Fab) 1008 0.04081 0.04496 0.04706 1.39% FabArray::ParallelCopy_nowait() 41 0.03466 0.03886 0.04054 1.19% Castro::normalize_species() 62 0.03642 0.03677 0.03718 1.10% StateDataPhysBCFunct::() 41 0.02826 0.031 0.03536 1.04% StateData::FillBoundary(geom) 41 0.02814 0.03088 0.03524 1.04% Castro::construct_new_source() 50 0.02814 0.02943 0.0318 0.94% Gravity::interpolate_monopole_grav() 21 0.02542 0.02625 0.02843 0.84% Castro::construct_new_gravity_source() 10 0.02237 0.02336 0.02548 0.75% Castro::post_init() 1 0.02359 0.02393 0.02404 0.71% Amr::writePlotFile() 2 0.02272 0.02288 0.02336 0.69% Castro::finalize_do_advance() 10 0.01313 0.0185 0.02212 0.65% Castro::post_timestep() 10 0.01365 0.01429 0.01466 0.43% Castro::apply_source_to_state() 20 0.0106 0.0121 0.01289 0.38% FabArray::Saxpy() 20 0.01056 0.01205 0.01284 0.38% VisMF::Write(FabArray) 2 0.008686 0.009915 0.01274 0.38% Castro::Castro() 1 0.01065 0.01123 0.01193 0.35% Castro::check_for_nan() 20 0.009834 0.01061 0.01162 0.34% MultiFab::contains_nan() 20 0.009806 0.01058 0.01159 0.34% FabArray::setDomainBndry() 41 0.007664 0.009687 0.01061 0.31% Castro::construct_old_source() 50 0.006607 0.008733 0.009337 0.28% Castro::construct_old_gravity_source() 10 0.006553 0.008671 0.009278 0.27% Castro::computeNewDt() 9 0.009189 0.009207 0.00922 0.27% Castro::initMFs() 1 0.006533 0.006697 0.007256 0.21% Other 265 0.02551 0.02843 0.03064 0.90% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 2 B 2 B 4 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8646 KiB 8655 KiB 8657 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6775 KiB 6782 KiB 6786 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 7119 KiB 7127 KiB 7129 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 4582 KiB 4588 KiB 4610 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 200 KiB 224 KiB 247 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 14 KiB 16 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2813 KiB 2816 KiB 2817 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 224 KiB 236 KiB 246 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 36 KiB 44 KiB 58 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2024 KiB 2026 KiB 2026 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 76 KiB 77 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 68 KiB 73 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (26.01-7-gc2a1abe7911b) finalized