Initializing AMReX (26.01-11-gd8280a3b9ed9)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (26.01-11-gd8280a3b9ed9) initialized Starting run at 06:21:03 UTC on 2026-01-13. Successfully read inputs file ... Castro git describe: 26.01-9-g966eca662 AMReX git describe: 26.01-11-gd8280a3b9 Microphysics git describe: 26.01-11-g4fdcf27c reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014708088 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.336348523 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.341278086 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.316137273 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.323903689 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.362811195 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.294266495 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.284628557 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.2853842 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.285414 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.285984313 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.00763688 seconds Ending run at 06:21:06 UTC on 2026-01-13. Run time = 3.310870026 Run time without initialization = 3.129420005 Average number of zones advanced per microsecond: 0.838 Average number of zones advanced per microsecond per rank: 0.105 TinyProfiler total time across processes [min...avg...max]: 3.3091 ... 3.3101 ... 3.3109 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.0680 2.1189 2.1477 64.87% Gravity::make_radial_gravity() 21 0.2892 0.3016 0.3093 9.34% check_for_negative_density() 10 0.0954 0.1251 0.177 5.35% Castro::estTimeStep() 21 0.02405 0.07772 0.1174 3.54% Castro::initData() 1 0.03299 0.06942 0.1174 3.54% amrex::Copy() 193 0.08057 0.08907 0.1084 3.27% FabArray::setVal() 143 0.06795 0.07273 0.07883 2.38% FabArray::ParallelCopy_finish() 41 0.03578 0.05618 0.07387 2.23% Castro::reset_internal_energy(Fab) 1008 0.04326 0.04551 0.04731 1.43% FabArray::ParallelCopy_nowait() 41 0.03797 0.0409 0.04293 1.30% FillPatchIterator::Initialize 41 0.02932 0.03472 0.03718 1.12% Castro::normalize_species() 62 0.03547 0.03575 0.03624 1.09% StateData::FillBoundary(geom) 41 0.0287 0.03113 0.03312 1.00% Gravity::interpolate_monopole_grav() 21 0.02547 0.02667 0.0285 0.86% Castro::construct_new_gravity_source() 10 0.02256 0.02388 0.02612 0.79% Castro::initialize_do_advance() 10 0.01642 0.0178 0.01881 0.57% Castro::computeTemp() 63 0.01772 0.01816 0.01855 0.56% MultiFab::contains_nan() 20 0.009962 0.01147 0.01545 0.47% Castro::initialize_advance() 10 0.01068 0.0125 0.01478 0.45% FabArray::setDomainBndry() 41 0.008648 0.01115 0.01342 0.41% FabArray::Saxpy() 20 0.01226 0.01277 0.01332 0.40% VisMF::Write(FabArray) 2 0.009329 0.009768 0.0122 0.37% Amr::writePlotFile() 2 0.007287 0.009903 0.01042 0.31% Castro::construct_old_gravity_source() 10 0.008845 0.00926 0.009599 0.29% Castro::initMFs() 1 0.006429 0.006794 0.008507 0.26% Castro::enforce_min_density() 62 0.006175 0.006347 0.006775 0.20% Castro::construct_new_source() 50 0.006072 0.006246 0.006372 0.19% main() 1 0.0032 0.004332 0.004943 0.15% Gravity::get_new_grav_vector() 11 0.003152 0.00355 0.003767 0.11% Gravity::get_old_grav_vector() 10 0.001623 0.002187 0.002541 0.08% Amr::coarseTimeStep() 10 0.001221 0.001583 0.001861 0.06% Castro::finalize_do_advance() 10 0.001297 0.001376 0.001729 0.05% AmrLevel::FillPatch() 41 0.000921 0.001021 0.001242 0.04% Amr::timeStep() 10 0.0001323 0.0001759 0.0004352 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002605 0.0002766 0.0003036 0.01% Castro::do_advance_ctu() 10 0.0001321 0.0001522 0.0001776 0.01% Castro::clean_state() 62 0.0001307 0.0001495 0.000161 0.00% StateDataPhysBCFunct::() 41 9.644e-05 0.0001123 0.0001372 0.00% Castro::Castro() 1 6.259e-05 9.626e-05 0.0001363 0.00% FillPatchIterator::FillFromLevel0() 41 9.244e-05 9.822e-05 0.0001052 0.00% Amr::FinalizeInit() 1 4.299e-06 1.621e-05 9.621e-05 0.00% FabArray::ParallelCopy() 41 7.474e-05 8.682e-05 9.566e-05 0.00% Castro::do_old_sources() 10 6.722e-05 8.197e-05 8.993e-05 0.00% FillPatchSingleLevel 41 6.689e-05 7.336e-05 8.411e-05 0.00% Castro::apply_source_to_state() 20 4.773e-05 5.449e-05 7.76e-05 0.00% Castro::construct_old_source() 50 5.47e-05 6.492e-05 7.62e-05 0.00% Castro::do_new_sources() 10 4.681e-05 5.805e-05 6.766e-05 0.00% Castro::construct_old_gravity() 10 3.391e-05 4.357e-05 6.486e-05 0.00% Castro::subcycle_advance_ctu() 10 4.209e-05 5.128e-05 6.44e-05 0.00% Amr::defBaseLevel() 1 3.85e-05 4.544e-05 5.298e-05 0.00% Castro::advance() 10 2.974e-05 3.927e-05 4.728e-05 0.00% Castro::check_for_nan() 20 2.104e-05 2.57e-05 4.377e-05 0.00% Castro::construct_new_gravity() 10 2.79e-05 3.266e-05 3.558e-05 0.00% Castro::post_init() 1 1.442e-05 1.981e-05 3.347e-05 0.00% Castro::post_timestep() 10 1.407e-05 1.761e-05 2.752e-05 0.00% Castro::expand_state() 10 1.852e-05 2.233e-05 2.688e-05 0.00% Castro::computeNewDt() 9 8.387e-06 9.393e-06 1.049e-05 0.00% Castro::computeInitialDt() 2 5.243e-06 7.208e-06 8.781e-06 0.00% Amr::initialInit() 1 1.456e-06 2.72e-06 8.675e-06 0.00% Amr::InitializeInit() 1 5.279e-06 5.776e-06 6.603e-06 0.00% Amr::init() 1 1.71e-06 2.761e-06 6.285e-06 0.00% Other 203 0.01043 0.01282 0.01434 0.43% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.309 3.31 3.311 100.00% Amr::coarseTimeStep() 10 3.117 3.117 3.117 94.14% Amr::timeStep() 10 3.104 3.105 3.105 93.78% Castro::advance() 10 3.09 3.09 3.09 93.34% Castro::subcycle_advance_ctu() 10 3.011 3.015 3.019 91.17% Castro::do_advance_ctu() 10 3.011 3.015 3.019 91.17% Castro::construct_ctu_hydro_source() 10 2.261 2.263 2.267 68.48% Gravity::make_radial_gravity() 21 0.3167 0.32 0.3258 9.84% AmrLevel::FillPatch() 41 0.1897 0.2093 0.2203 6.65% Gravity::get_new_grav_vector() 11 0.2083 0.2104 0.212 6.40% Castro::construct_old_gravity() 10 0.1925 0.1963 0.2021 6.10% Gravity::get_old_grav_vector() 10 0.1917 0.1956 0.2014 6.08% Castro::construct_new_gravity() 10 0.1871 0.1883 0.1889 5.70% FillPatchIterator::Initialize 41 0.1591 0.1745 0.1843 5.57% Amr::init() 1 0.1801 0.1809 0.1811 5.47% check_for_negative_density() 10 0.0954 0.1251 0.177 5.35% Castro::initialize_do_advance() 10 0.1578 0.1649 0.1697 5.13% Amr::initialInit() 1 0.1652 0.1659 0.1662 5.02% FillPatchIterator::FillFromLevel0() 41 0.1085 0.1287 0.1424 4.30% FillPatchSingleLevel 41 0.1084 0.1286 0.1423 4.30% Amr::InitializeInit() 1 0.05446 0.09072 0.1391 4.20% Amr::defBaseLevel() 1 0.05445 0.09072 0.1391 4.20% Castro::initData() 1 0.03673 0.07314 0.1207 3.64% Castro::estTimeStep() 21 0.02405 0.07772 0.1174 3.54% Castro::expand_state() 10 0.105 0.1118 0.1162 3.51% FabArray::ParallelCopy() 41 0.07739 0.09726 0.112 3.38% Amr::FinalizeInit() 1 0.02634 0.0752 0.1117 3.37% amrex::Copy() 193 0.08057 0.08907 0.1084 3.27% Castro::clean_state() 62 0.103 0.1054 0.1079 3.26% Castro::do_old_sources() 10 0.09355 0.1006 0.106 3.20% Castro::computeInitialDt() 2 0.00232 0.05125 0.08776 2.65% FabArray::setVal() 143 0.06795 0.07273 0.07883 2.38% Castro::initialize_advance() 10 0.06787 0.07205 0.07525 2.27% FabArray::ParallelCopy_finish() 41 0.03578 0.05618 0.07387 2.23% Castro::do_new_sources() 10 0.05943 0.06268 0.06727 2.03% Castro::computeTemp() 63 0.06123 0.06395 0.06594 1.99% Castro::reset_internal_energy(MultiFab) 63 0.04352 0.04579 0.04761 1.44% Castro::reset_internal_energy(Fab) 1008 0.04326 0.04551 0.04731 1.43% FabArray::ParallelCopy_nowait() 41 0.03807 0.041 0.04303 1.30% Castro::normalize_species() 62 0.03547 0.03575 0.03624 1.09% StateDataPhysBCFunct::() 41 0.02881 0.03124 0.03323 1.00% StateData::FillBoundary(geom) 41 0.0287 0.03113 0.03312 1.00% Castro::construct_new_source() 50 0.02863 0.03012 0.03244 0.98% Gravity::interpolate_monopole_grav() 21 0.02547 0.02667 0.0285 0.86% Castro::construct_new_gravity_source() 10 0.02256 0.02388 0.02612 0.79% Castro::post_init() 1 0.02347 0.02366 0.02377 0.72% Amr::writePlotFile() 2 0.0226 0.02268 0.02281 0.69% Castro::finalize_do_advance() 10 0.01386 0.01825 0.02155 0.65% Castro::check_for_nan() 20 0.009984 0.0115 0.01549 0.47% MultiFab::contains_nan() 20 0.009962 0.01147 0.01545 0.47% Castro::post_timestep() 10 0.01399 0.01434 0.01445 0.44% FabArray::setDomainBndry() 41 0.008648 0.01115 0.01342 0.41% Castro::apply_source_to_state() 20 0.01231 0.01282 0.01337 0.40% FabArray::Saxpy() 20 0.01226 0.01277 0.01332 0.40% VisMF::Write(FabArray) 2 0.009329 0.009768 0.0122 0.37% Castro::Castro() 1 0.01073 0.01107 0.01203 0.36% Castro::construct_old_source() 50 0.0089 0.009325 0.009668 0.29% Castro::computeNewDt() 9 0.009604 0.009616 0.009631 0.29% Castro::construct_old_gravity_source() 10 0.008845 0.00926 0.009599 0.29% Castro::initMFs() 1 0.006429 0.006794 0.008507 0.26% Castro::enforce_min_density() 62 0.006175 0.006347 0.006775 0.20% Other 203 0.02044 0.02404 0.02657 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 13 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 2 B 4 B 13 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 13 MiB 13 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8643 KiB 8651 KiB 8653 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6724 KiB 6729 KiB 6731 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 7118 KiB 7124 KiB 7127 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 4535 KiB 4539 KiB 4543 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 213 KiB 234 KiB 245 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 17 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2790 KiB 2794 KiB 2794 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 243 KiB 245 KiB 250 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 35 KiB 43 KiB 49 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2023 KiB 2025 KiB 2025 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 80 KiB 81 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 74 KiB 75 KiB 78 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (26.01-11-gd8280a3b9ed9) finalized