Initializing AMReX (26.01-24-gfde4d987226e)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (26.01-24-gfde4d987226e) initialized Starting run at 20:25:59 UTC on 2026-01-21. Successfully read inputs file ... Castro git describe: 26.01-11-g3d7eded2f AMReX git describe: 26.01-24-gfde4d9872 Microphysics git describe: 26.01-19-g48e4acd5 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014816549 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.331343335 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.337061905 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.30519617 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.306021041 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.355806213 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.299437306 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.288403344 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.299087518 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.285131617 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.286516746 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007982794 seconds Ending run at 20:26:03 UTC on 2026-01-21. Run time = 3.269412191 Run time without initialization = 3.107305629 Average number of zones advanced per microsecond: 0.844 Average number of zones advanced per microsecond per rank: 0.105 TinyProfiler total time across processes [min...avg...max]: 3.2685 ... 3.2692 ... 3.2695 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1083 2.1691 2.2350 68.36% Gravity::make_radial_gravity() 21 0.2843 0.2885 0.3043 9.31% check_for_negative_density() 10 0.02934 0.0989 0.1622 4.96% Castro::estTimeStep() 21 0.0274 0.06267 0.1014 3.10% Castro::initData() 1 0.03505 0.06939 0.1005 3.07% amrex::Copy() 193 0.06428 0.07897 0.08599 2.63% FabArray::ParallelCopy_finish() 41 0.03806 0.04651 0.08403 2.57% FabArray::setVal() 143 0.05575 0.06654 0.07143 2.18% Castro::reset_internal_energy(Fab) 1008 0.04225 0.04534 0.0478 1.46% FabArray::ParallelCopy_nowait() 41 0.03388 0.03934 0.04145 1.27% StateData::FillBoundary(geom) 41 0.02955 0.03305 0.03551 1.09% Castro::normalize_species() 62 0.03373 0.0341 0.03472 1.06% FillPatchIterator::Initialize 41 0.02754 0.03204 0.03444 1.05% Castro::construct_new_gravity_source() 10 0.02166 0.02345 0.02565 0.78% Gravity::interpolate_monopole_grav() 21 0.0249 0.02534 0.02563 0.78% Castro::computeTemp() 63 0.01694 0.01808 0.01873 0.57% Castro::initialize_do_advance() 10 0.01161 0.01627 0.01784 0.55% Castro::initialize_advance() 10 0.005343 0.01075 0.01394 0.43% FabArray::Saxpy() 20 0.01055 0.0126 0.01365 0.42% VisMF::Write(FabArray) 2 0.009152 0.009767 0.01319 0.40% FabArray::setDomainBndry() 41 0.009175 0.01123 0.01258 0.38% MultiFab::contains_nan() 20 0.008908 0.009781 0.01107 0.34% Amr::writePlotFile() 2 0.007724 0.01012 0.01059 0.32% Castro::construct_old_gravity_source() 10 0.006979 0.009609 0.01022 0.31% Castro::initMFs() 1 0.006567 0.007032 0.008012 0.25% Castro::enforce_min_density() 62 0.005996 0.006389 0.006913 0.21% Castro::construct_new_source() 50 0.005443 0.00599 0.006302 0.19% main() 1 0.003652 0.004308 0.004729 0.14% Gravity::get_new_grav_vector() 11 0.0028 0.003435 0.003723 0.11% Gravity::get_old_grav_vector() 10 0.001657 0.002063 0.002531 0.08% Amr::coarseTimeStep() 10 0.0007672 0.001672 0.002095 0.06% Castro::finalize_do_advance() 10 0.0005786 0.001161 0.001349 0.04% AmrLevel::FillPatch() 41 0.0008177 0.001115 0.001264 0.04% Amr::timeStep() 10 0.0001382 0.0001782 0.0003857 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002601 0.0002763 0.0002836 0.01% Castro::do_advance_ctu() 10 0.0001374 0.000159 0.0001922 0.01% Castro::clean_state() 62 0.0001293 0.0001459 0.0001626 0.00% Castro::do_old_sources() 10 6.67e-05 9.057e-05 0.0001246 0.00% FillPatchIterator::FillFromLevel0() 41 9.391e-05 0.0001068 0.0001243 0.00% StateDataPhysBCFunct::() 41 7.993e-05 0.0001063 0.0001202 0.00% Castro::Castro() 1 5.415e-05 8.208e-05 0.0001062 0.00% FabArray::ParallelCopy() 41 7.261e-05 8.256e-05 9.951e-05 0.00% FillPatchSingleLevel 41 6.405e-05 7.108e-05 8.439e-05 0.00% Amr::FinalizeInit() 1 3.552e-06 1.534e-05 8.175e-05 0.00% Castro::construct_old_source() 50 4.334e-05 6.524e-05 7.63e-05 0.00% Castro::subcycle_advance_ctu() 10 4.662e-05 5.52e-05 6.512e-05 0.00% Castro::apply_source_to_state() 20 4.251e-05 5.616e-05 6.399e-05 0.00% Castro::do_new_sources() 10 4.625e-05 5.268e-05 5.715e-05 0.00% Amr::defBaseLevel() 1 4.002e-05 4.496e-05 5.317e-05 0.00% Castro::advance() 10 3.705e-05 4.217e-05 4.753e-05 0.00% Castro::construct_old_gravity() 10 3.283e-05 3.854e-05 4.644e-05 0.00% Castro::construct_new_gravity() 10 2.991e-05 3.459e-05 4.381e-05 0.00% Castro::check_for_nan() 20 2.007e-05 2.269e-05 2.573e-05 0.00% Castro::expand_state() 10 1.817e-05 2.153e-05 2.328e-05 0.00% Castro::post_init() 1 1.535e-05 1.773e-05 2.15e-05 0.00% Castro::post_timestep() 10 1.474e-05 1.794e-05 2.018e-05 0.00% Amr::InitializeInit() 1 2.472e-06 4.1e-06 1.043e-05 0.00% Castro::computeNewDt() 9 8.329e-06 9.172e-06 1.03e-05 0.00% Castro::computeInitialDt() 2 6.14e-06 7.349e-06 8.219e-06 0.00% Amr::initialInit() 1 1.819e-06 4.615e-06 5.49e-06 0.00% Amr::init() 1 1.863e-06 2.205e-06 2.59e-06 0.00% Other 203 0.009256 0.01279 0.01456 0.45% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.269 3.269 3.269 100.00% Amr::coarseTimeStep() 10 3.095 3.095 3.095 94.66% Amr::timeStep() 10 3.081 3.082 3.083 94.29% Castro::advance() 10 3.067 3.068 3.068 93.84% Castro::subcycle_advance_ctu() 10 2.993 2.997 3.013 92.15% Castro::do_advance_ctu() 10 2.993 2.997 3.013 92.15% Castro::construct_ctu_hydro_source() 10 2.283 2.287 2.29 70.03% Gravity::make_radial_gravity() 21 0.301 0.3049 0.3172 9.70% AmrLevel::FillPatch() 41 0.1791 0.1952 0.211 6.45% Gravity::get_new_grav_vector() 11 0.2047 0.2062 0.2077 6.35% Castro::construct_old_gravity() 10 0.1758 0.1788 0.1893 5.79% Gravity::get_old_grav_vector() 10 0.1751 0.1781 0.1887 5.77% FillPatchIterator::Initialize 41 0.1484 0.1626 0.1859 5.69% Castro::construct_new_gravity() 10 0.1835 0.1844 0.1856 5.68% Castro::initialize_do_advance() 10 0.15 0.1575 0.1624 4.97% check_for_negative_density() 10 0.02934 0.0989 0.1622 4.96% Amr::init() 1 0.1609 0.1618 0.1621 4.96% FillPatchIterator::FillFromLevel0() 41 0.1103 0.1194 0.1479 4.52% FillPatchSingleLevel 41 0.1102 0.1192 0.1478 4.52% Amr::initialInit() 1 0.1459 0.1473 0.1477 4.52% Amr::InitializeInit() 1 0.05575 0.09073 0.1218 3.73% Amr::defBaseLevel() 1 0.05575 0.09073 0.1218 3.73% Castro::expand_state() 10 0.0988 0.1082 0.1186 3.63% FabArray::ParallelCopy() 41 0.07796 0.08602 0.1181 3.61% Castro::clean_state() 62 0.09939 0.1035 0.1077 3.29% Castro::initData() 1 0.03865 0.07304 0.104 3.18% Castro::estTimeStep() 21 0.0274 0.06267 0.1014 3.10% Castro::do_old_sources() 10 0.0886 0.09224 0.09566 2.93% Amr::FinalizeInit() 1 0.02577 0.0566 0.09192 2.81% amrex::Copy() 193 0.06428 0.07897 0.08599 2.63% FabArray::ParallelCopy_finish() 41 0.03806 0.04651 0.08403 2.57% Castro::initialize_advance() 10 0.05097 0.06693 0.07145 2.19% FabArray::setVal() 143 0.05575 0.06654 0.07143 2.18% Castro::computeInitialDt() 2 0.002406 0.03327 0.06849 2.09% Castro::computeTemp() 63 0.05948 0.0637 0.06681 2.04% Castro::do_new_sources() 10 0.05791 0.06108 0.06669 2.04% Castro::reset_internal_energy(MultiFab) 63 0.04253 0.04562 0.04809 1.47% Castro::reset_internal_energy(Fab) 1008 0.04225 0.04534 0.0478 1.46% FabArray::ParallelCopy_nowait() 41 0.03399 0.03943 0.04154 1.27% StateDataPhysBCFunct::() 41 0.02963 0.03315 0.03561 1.09% StateData::FillBoundary(geom) 41 0.02955 0.03305 0.03551 1.09% Castro::normalize_species() 62 0.03373 0.0341 0.03472 1.06% Castro::construct_new_source() 50 0.02768 0.02944 0.03195 0.98% Castro::construct_new_gravity_source() 10 0.02166 0.02345 0.02565 0.78% Gravity::interpolate_monopole_grav() 21 0.0249 0.02534 0.02563 0.78% Castro::finalize_do_advance() 10 0.01482 0.02058 0.02413 0.74% Castro::post_init() 1 0.02248 0.02311 0.02326 0.71% Amr::writePlotFile() 2 0.02242 0.02254 0.02305 0.71% Castro::post_timestep() 10 0.01351 0.01401 0.01462 0.45% Castro::apply_source_to_state() 20 0.01059 0.01266 0.01372 0.42% FabArray::Saxpy() 20 0.01055 0.0126 0.01365 0.42% VisMF::Write(FabArray) 2 0.009152 0.009767 0.01319 0.40% FabArray::setDomainBndry() 41 0.009175 0.01123 0.01258 0.38% Castro::Castro() 1 0.0105 0.01109 0.01185 0.36% Castro::check_for_nan() 20 0.00893 0.009804 0.0111 0.34% MultiFab::contains_nan() 20 0.008908 0.009781 0.01107 0.34% Castro::construct_old_source() 50 0.007022 0.009674 0.0103 0.31% Castro::construct_old_gravity_source() 10 0.006979 0.009609 0.01022 0.31% Castro::computeNewDt() 9 0.009995 0.01 0.01002 0.31% Castro::initMFs() 1 0.006567 0.007032 0.008012 0.25% Castro::enforce_min_density() 62 0.005996 0.006389 0.006913 0.21% Other 203 0.01899 0.024 0.02684 0.82% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 3 B 4 B 13 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 15 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8638 KiB 8650 KiB 8653 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6763 KiB 6767 KiB 6768 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 7116 KiB 7124 KiB 7126 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 4564 KiB 4570 KiB 4590 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 204 KiB 223 KiB 244 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2804 KiB 2808 KiB 2809 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 234 KiB 237 KiB 246 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 36 KiB 40 KiB 56 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2022 KiB 2025 KiB 2025 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 80 KiB 80 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 68 KiB 69 KiB 73 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (26.01-24-gfde4d987226e) finalized