Initializing AMReX (26.02-12-gd7da50458966)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (26.02-12-gd7da50458966) initialized Starting run at 06:17:44 UTC on 2026-02-10. Successfully read inputs file ... Castro git describe: 26.02-3-gcfb253602 AMReX git describe: 26.02-12-gd7da50458 Microphysics git describe: 26.02-1-g64af4cfc reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014542278 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.333596739 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.324737458 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.314858268 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.311697061 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.35118246 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.305839758 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.292824251 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.291568808 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.29038213 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.293470772 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007677566 seconds Ending run at 06:17:48 UTC on 2026-02-10. Run time = 3.285443368 Run time without initialization = 3.123532332 Average number of zones advanced per microsecond: 0.839 Average number of zones advanced per microsecond per rank: 0.105 TinyProfiler total time across processes [min...avg...max]: 3.2841 ... 3.2849 ... 3.2855 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 2.1283 2.1864 2.2400 68.18% Gravity::make_radial_gravity() 21 0.2852 0.2918 0.314 9.56% check_for_negative_density() 10 0.01977 0.07874 0.1408 4.29% Castro::initData() 1 0.03559 0.06988 0.09945 3.03% FabArray::ParallelCopy_finish() 41 0.03879 0.05045 0.09904 3.01% Castro::estTimeStep() 21 0.02659 0.06057 0.09778 2.98% amrex::Copy() 193 0.06097 0.08148 0.08838 2.69% FabArray::setVal() 143 0.0516 0.06853 0.07449 2.27% Castro::reset_internal_energy(Fab) 1008 0.04367 0.04617 0.04842 1.47% FabArray::ParallelCopy_nowait() 41 0.03473 0.04076 0.04329 1.32% StateData::FillBoundary(geom) 41 0.02887 0.0337 0.03642 1.11% FillPatchIterator::Initialize 41 0.02668 0.03308 0.03577 1.09% Castro::normalize_species() 62 0.03336 0.03431 0.03532 1.08% Gravity::interpolate_monopole_grav() 21 0.02479 0.02519 0.02557 0.78% Castro::construct_new_gravity_source() 10 0.02224 0.02322 0.02483 0.76% Castro::computeTemp() 63 0.01771 0.01853 0.01908 0.58% Castro::initialize_do_advance() 10 0.009647 0.01615 0.01821 0.55% FabArray::setDomainBndry() 41 0.009011 0.01281 0.01597 0.49% FabArray::Saxpy() 20 0.01177 0.01374 0.01492 0.45% Castro::initialize_advance() 10 0.004982 0.01065 0.01353 0.41% VisMF::Write(FabArray) 2 0.009126 0.009723 0.01317 0.40% MultiFab::contains_nan() 20 0.009372 0.0105 0.01178 0.36% Castro::construct_old_gravity_source() 10 0.007033 0.009542 0.01041 0.32% Amr::writePlotFile() 2 0.007183 0.009608 0.0102 0.31% Castro::initMFs() 1 0.006544 0.007157 0.008218 0.25% Castro::enforce_min_density() 62 0.006171 0.006409 0.006649 0.20% Castro::construct_new_source() 50 0.005776 0.006229 0.0065 0.20% main() 1 0.004671 0.004993 0.005175 0.16% Gravity::get_new_grav_vector() 11 0.002666 0.003534 0.003842 0.12% Gravity::get_old_grav_vector() 10 0.00149 0.002209 0.002938 0.09% Amr::coarseTimeStep() 10 0.001175 0.001868 0.002613 0.08% Castro::finalize_do_advance() 10 0.000541 0.001048 0.001242 0.04% AmrLevel::FillPatch() 41 0.0007834 0.001097 0.001235 0.04% Amr::timeStep() 10 0.0001328 0.0001909 0.0004968 0.02% Castro::reset_internal_energy(MultiFab) 63 0.0002585 0.0002763 0.0003038 0.01% Castro::do_advance_ctu() 10 0.0001331 0.0001604 0.0001898 0.01% Castro::clean_state() 62 0.0001481 0.0001554 0.0001669 0.01% FillPatchIterator::FillFromLevel0() 41 9.476e-05 0.0001106 0.0001321 0.00% StateDataPhysBCFunct::() 41 9.231e-05 0.0001062 0.0001136 0.00% Castro::do_old_sources() 10 7.302e-05 9.066e-05 0.0001065 0.00% FabArray::ParallelCopy() 41 9.084e-05 9.592e-05 0.0001029 0.00% Amr::FinalizeInit() 1 3.671e-06 1.678e-05 9.883e-05 0.00% Castro::Castro() 1 5.229e-05 6.761e-05 8.852e-05 0.00% Castro::construct_old_source() 50 5.47e-05 7.051e-05 8.14e-05 0.00% FillPatchSingleLevel 41 6.671e-05 7.222e-05 7.863e-05 0.00% Castro::do_new_sources() 10 4.838e-05 6.087e-05 7.807e-05 0.00% Castro::subcycle_advance_ctu() 10 3.86e-05 5.203e-05 6.433e-05 0.00% Castro::apply_source_to_state() 20 4.585e-05 5.298e-05 6.06e-05 0.00% Castro::advance() 10 4.11e-05 4.729e-05 5.469e-05 0.00% Castro::construct_old_gravity() 10 3.821e-05 4.44e-05 5.224e-05 0.00% Castro::construct_new_gravity() 10 3.234e-05 3.808e-05 4.554e-05 0.00% Amr::defBaseLevel() 1 3.546e-05 3.785e-05 4.162e-05 0.00% Castro::check_for_nan() 20 2.287e-05 2.572e-05 3.108e-05 0.00% Castro::expand_state() 10 2.017e-05 2.333e-05 2.853e-05 0.00% Castro::post_timestep() 10 1.525e-05 1.781e-05 2.017e-05 0.00% Castro::post_init() 1 8.523e-06 1.031e-05 1.475e-05 0.00% Castro::computeNewDt() 9 8.385e-06 9.588e-06 1.091e-05 0.00% Castro::computeInitialDt() 2 5.436e-06 6.609e-06 8.011e-06 0.00% Amr::InitializeInit() 1 2.713e-06 3.353e-06 6.063e-06 0.00% Amr::init() 1 1.808e-06 2.155e-06 2.725e-06 0.00% Amr::initialInit() 1 1.257e-06 1.721e-06 2.21e-06 0.00% Other 203 0.009324 0.01294 0.01501 0.46% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.284 3.285 3.285 100.00% Amr::coarseTimeStep() 10 3.111 3.111 3.111 94.68% Amr::timeStep() 10 3.097 3.097 3.098 94.30% Castro::advance() 10 3.082 3.083 3.084 93.86% Castro::subcycle_advance_ctu() 10 3.005 3.011 3.031 92.26% Castro::do_advance_ctu() 10 3.005 3.01 3.031 92.26% Castro::construct_ctu_hydro_source() 10 2.28 2.285 2.289 69.67% Gravity::make_radial_gravity() 21 0.3025 0.3094 0.3277 9.98% AmrLevel::FillPatch() 41 0.1974 0.2055 0.2229 6.79% Gravity::get_new_grav_vector() 11 0.2065 0.2078 0.2094 6.37% Castro::construct_old_gravity() 10 0.1775 0.183 0.1991 6.06% FillPatchIterator::Initialize 41 0.1624 0.1713 0.1988 6.05% Gravity::get_old_grav_vector() 10 0.1768 0.1823 0.1985 6.04% Castro::construct_new_gravity() 10 0.185 0.1857 0.1867 5.68% Castro::initialize_do_advance() 10 0.1607 0.1659 0.1701 5.18% FillPatchIterator::FillFromLevel0() 41 0.1167 0.1254 0.1631 4.97% FillPatchSingleLevel 41 0.1166 0.1253 0.163 4.96% Amr::init() 1 0.1604 0.1612 0.1616 4.92% Amr::initialInit() 1 0.1457 0.1469 0.1474 4.49% check_for_negative_density() 10 0.01977 0.07874 0.1408 4.29% FabArray::ParallelCopy() 41 0.08045 0.0914 0.134 4.08% Castro::expand_state() 10 0.1108 0.116 0.1277 3.89% Amr::InitializeInit() 1 0.05717 0.09119 0.1203 3.66% Amr::defBaseLevel() 1 0.05716 0.09118 0.1203 3.66% Castro::clean_state() 62 0.1013 0.105 0.1073 3.27% Castro::initData() 1 0.03908 0.07351 0.1031 3.14% FabArray::ParallelCopy_finish() 41 0.03879 0.05045 0.09904 3.01% Castro::do_old_sources() 10 0.09351 0.09491 0.09808 2.99% Castro::estTimeStep() 21 0.02659 0.06057 0.09778 2.98% Amr::FinalizeInit() 1 0.02615 0.05569 0.08993 2.74% amrex::Copy() 193 0.06097 0.08148 0.08838 2.69% FabArray::setVal() 143 0.0516 0.06853 0.07449 2.27% Castro::initialize_advance() 10 0.04794 0.06909 0.07419 2.26% Castro::computeTemp() 63 0.06165 0.06497 0.06776 2.06% Castro::do_new_sources() 10 0.05775 0.06188 0.06686 2.04% Castro::computeInitialDt() 2 0.002402 0.03206 0.06628 2.02% Castro::reset_internal_energy(MultiFab) 63 0.04394 0.04644 0.04869 1.48% Castro::reset_internal_energy(Fab) 1008 0.04367 0.04617 0.04842 1.47% FabArray::ParallelCopy_nowait() 41 0.03484 0.04085 0.04337 1.32% StateDataPhysBCFunct::() 41 0.02896 0.0338 0.03653 1.11% StateData::FillBoundary(geom) 41 0.02887 0.0337 0.03642 1.11% Castro::normalize_species() 62 0.03336 0.03431 0.03532 1.08% Castro::construct_new_source() 50 0.02802 0.02945 0.03113 0.95% Gravity::interpolate_monopole_grav() 21 0.02479 0.02519 0.02557 0.78% Castro::construct_new_gravity_source() 10 0.02224 0.02322 0.02483 0.76% Castro::post_init() 1 0.02291 0.02339 0.02353 0.72% Castro::finalize_do_advance() 10 0.01404 0.0193 0.02321 0.71% Amr::writePlotFile() 2 0.02195 0.02207 0.02246 0.68% FabArray::setDomainBndry() 41 0.009011 0.01281 0.01597 0.49% Castro::apply_source_to_state() 20 0.01181 0.0138 0.01497 0.46% FabArray::Saxpy() 20 0.01177 0.01374 0.01492 0.45% Castro::post_timestep() 10 0.01346 0.01403 0.01436 0.44% VisMF::Write(FabArray) 2 0.009126 0.009723 0.01317 0.40% Castro::Castro() 1 0.01005 0.01101 0.01191 0.36% Castro::check_for_nan() 20 0.009399 0.01052 0.01181 0.36% MultiFab::contains_nan() 20 0.009372 0.0105 0.01178 0.36% Castro::construct_old_source() 50 0.007088 0.009613 0.01049 0.32% Castro::construct_old_gravity_source() 10 0.007033 0.009542 0.01041 0.32% Castro::computeNewDt() 9 0.01027 0.01028 0.0103 0.31% Castro::initMFs() 1 0.006544 0.007157 0.008218 0.25% Castro::enforce_min_density() 62 0.006171 0.006409 0.006649 0.20% Other 203 0.01913 0.02449 0.02788 0.85% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 2 B 3 B 4 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 14 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8637 KiB 8648 KiB 8652 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6765 KiB 6770 KiB 6771 KiB 7153 KiB 7153 KiB 7153 KiB StateData::define() 32 7114 KiB 7124 KiB 7126 KiB 7153 KiB 7153 KiB 7153 KiB Castro::initialize_do_advance() 80 4561 KiB 4569 KiB 4596 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 226 KiB 236 KiB 258 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 16 KiB 17 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2805 KiB 2809 KiB 2810 KiB 3000 KiB 3000 KiB 3000 KiB Gravity::make_radial_gravity() 168 233 KiB 239 KiB 253 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 38 KiB 43 KiB 65 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2022 KiB 2024 KiB 2025 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 80 KiB 81 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 69 KiB 71 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (26.02-12-gd7da50458966) finalized