Initializing AMReX (26.05-3-g4ceb814db7d7)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (26.05-3-g4ceb814db7d7) initialized Starting run at 05:16:55 UTC on 2026-05-05. Successfully read inputs file ... Castro git describe: 26.05-2-g7b8ad1db2 AMReX git describe: 26.05-3-g4ceb814db Microphysics git describe: 26.05 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014178146 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.323859343 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.319266664 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.318679087 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.326103398 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.352501571 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.282318062 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.27778514 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.278110031 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.27768523 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.280350285 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007704521 seconds Ending run at 05:16:58 UTC on 2026-05-05. Run time = 3.22923852 Run time without initialization = 3.047034101 Average number of zones advanced per microsecond: 0.860 Average number of zones advanced per microsecond per rank: 0.108 TinyProfiler total time across processes [min...avg...max]: 3.2247 ... 3.2273 ... 3.2293 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 1.9777 2.0554 2.1338 66.08% Gravity::make_radial_gravity() 21 0.2758 0.2805 0.2879 8.91% check_for_negative_density() 10 0.03158 0.1113 0.1795 5.56% Castro::estTimeStep() 21 0.03412 0.07452 0.117 3.62% Castro::initData() 1 0.03462 0.07198 0.1099 3.40% amrex::Copy() 193 0.08191 0.0878 0.09473 2.93% FabArray::setVal() 143 0.06362 0.06969 0.07583 2.35% FabArray::ParallelCopy_finish() 41 0.03601 0.04947 0.06949 2.15% FillPatchIterator::Initialize 41 0.03492 0.04431 0.04947 1.53% Castro::reset_internal_energy(Fab) 1008 0.04482 0.0459 0.0467 1.45% StateData::FillBoundary(geom) 41 0.03194 0.03449 0.04481 1.39% FabArray::ParallelCopy_nowait() 41 0.0345 0.03658 0.03912 1.21% Castro::initialize_do_advance() 10 0.01982 0.02501 0.03533 1.09% Castro::normalize_species() 62 0.03396 0.03458 0.0353 1.09% Castro::construct_new_gravity_source() 10 0.02247 0.02389 0.02569 0.80% Gravity::interpolate_monopole_grav() 21 0.02461 0.02496 0.02551 0.79% Castro::computeTemp() 63 0.01829 0.0187 0.01915 0.59% FabArray::Saxpy() 20 0.01259 0.01356 0.01456 0.45% Castro::initialize_advance() 10 0.007569 0.01093 0.0131 0.41% VisMF::Write(FabArray) 2 0.008049 0.0088 0.01227 0.38% FabArray::setDomainBndry() 41 0.009131 0.01102 0.01187 0.37% Amr::writePlotFile() 2 0.006795 0.0105 0.01143 0.35% Castro::construct_old_gravity_source() 10 0.009288 0.01052 0.01126 0.35% MultiFab::contains_nan() 20 0.009732 0.01057 0.0112 0.35% Amr::coarseTimeStep() 10 0.004975 0.006947 0.01115 0.35% Castro::initMFs() 1 0.006464 0.007621 0.01037 0.32% Castro::finalize_do_advance() 10 0.001293 0.006771 0.009681 0.30% StateData::define() 4 0.005152 0.006283 0.008532 0.26% Castro::construct_new_source() 50 0.006098 0.006342 0.006505 0.20% Gravity::get_new_grav_vector() 11 0.003692 0.004027 0.004393 0.14% Gravity::get_old_grav_vector() 10 0.00221 0.002775 0.00313 0.10% main() 1 0.001833 0.002024 0.002227 0.07% AmrLevel::FillPatch() 41 0.001076 0.00124 0.001393 0.04% Amr::timeStep() 10 0.0001422 0.0001874 0.0004092 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002477 0.0002687 0.0003028 0.01% Castro::do_advance_ctu() 10 0.0001533 0.0001787 0.0002312 0.01% Castro::clean_state() 62 0.0001339 0.0001569 0.000184 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001123 0.000125 0.0001499 0.00% StateDataPhysBCFunct::() 41 9.987e-05 0.0001161 0.0001241 0.00% Castro::do_old_sources() 10 8.182e-05 0.0001027 0.0001197 0.00% FabArray::ParallelCopy() 41 8.291e-05 9.381e-05 0.0001109 0.00% Castro::construct_old_source() 50 6.889e-05 8.016e-05 9.039e-05 0.00% Amr::FinalizeInit() 1 3.845e-06 1.535e-05 9.029e-05 0.00% Castro::Castro() 1 5.845e-05 7.32e-05 8.814e-05 0.00% FillPatchSingleLevel 41 6.758e-05 7.763e-05 8.534e-05 0.00% Castro::do_new_sources() 10 5.471e-05 6.573e-05 7.721e-05 0.00% Castro::apply_source_to_state() 20 5.554e-05 6.248e-05 7.316e-05 0.00% Castro::subcycle_advance_ctu() 10 4.698e-05 5.549e-05 6.489e-05 0.00% Castro::advance() 10 3.72e-05 4.403e-05 5.704e-05 0.00% Castro::construct_old_gravity() 10 3.867e-05 4.363e-05 5.255e-05 0.00% Amr::defBaseLevel() 1 3.325e-05 4.069e-05 5.092e-05 0.00% Castro::construct_new_gravity() 10 3.081e-05 3.588e-05 4.577e-05 0.00% Castro::expand_state() 10 1.673e-05 2.563e-05 3.465e-05 0.00% Castro::post_timestep() 10 1.523e-05 1.938e-05 2.948e-05 0.00% Castro::check_for_nan() 20 2.241e-05 2.536e-05 2.752e-05 0.00% AmrLevel::AmrLevel(dm) 1 6.328e-06 8.761e-06 1.293e-05 0.00% Castro::computeNewDt() 9 9.498e-06 1.067e-05 1.201e-05 0.00% Castro::computeInitialDt() 2 5.454e-06 6.504e-06 7.789e-06 0.00% Amr::InitializeInit() 1 2.41e-06 4.193e-06 7.687e-06 0.00% Amr::initialInit() 1 1.206e-06 2.447e-06 7.668e-06 0.00% Castro::post_init() 1 2.035e-06 2.759e-06 4.508e-06 0.00% Amr::init() 1 1.806e-06 2.22e-06 3.067e-06 0.00% Other 260 0.01143 0.01635 0.02163 0.67% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.225 3.227 3.229 100.00% Amr::coarseTimeStep() 10 3.037 3.037 3.037 94.05% Amr::timeStep() 10 3.015 3.019 3.021 93.55% Castro::advance() 10 3 3.005 3.007 93.10% Castro::subcycle_advance_ctu() 10 2.93 2.932 2.94 91.06% Castro::do_advance_ctu() 10 2.929 2.932 2.94 91.05% Castro::construct_ctu_hydro_source() 10 2.176 2.186 2.191 67.85% Gravity::make_radial_gravity() 21 0.2958 0.3006 0.3086 9.55% AmrLevel::FillPatch() 41 0.2026 0.2121 0.2188 6.78% Gravity::get_new_grav_vector() 11 0.2039 0.205 0.2064 6.39% Castro::construct_old_gravity() 10 0.1793 0.1826 0.1875 5.81% Gravity::get_old_grav_vector() 10 0.1785 0.1819 0.1869 5.79% Castro::construct_new_gravity() 10 0.182 0.1827 0.1836 5.68% FillPatchIterator::Initialize 41 0.1674 0.1764 0.1833 5.68% Amr::init() 1 0.1771 0.1799 0.1818 5.63% Castro::initialize_do_advance() 10 0.1726 0.1765 0.1815 5.62% check_for_negative_density() 10 0.03158 0.1113 0.1795 5.56% Amr::initialInit() 1 0.1628 0.1655 0.1675 5.19% FillPatchIterator::FillFromLevel0() 41 0.1089 0.121 0.1367 4.23% FillPatchSingleLevel 41 0.1088 0.1209 0.1366 4.23% Amr::InitializeInit() 1 0.05857 0.09594 0.1365 4.23% Amr::defBaseLevel() 1 0.05857 0.09593 0.1365 4.23% Castro::expand_state() 10 0.1084 0.117 0.1217 3.77% Castro::estTimeStep() 21 0.03412 0.07452 0.117 3.62% Castro::initData() 1 0.03833 0.07545 0.1134 3.51% Castro::do_old_sources() 10 0.09241 0.09876 0.1097 3.40% Amr::FinalizeInit() 1 0.02637 0.06954 0.1089 3.37% Castro::clean_state() 62 0.1037 0.1052 0.107 3.31% FabArray::ParallelCopy() 41 0.07217 0.08624 0.1042 3.23% amrex::Copy() 193 0.08191 0.0878 0.09473 2.93% Castro::computeInitialDt() 2 0.002468 0.04569 0.08498 2.63% FabArray::setVal() 143 0.06362 0.06969 0.07583 2.35% Castro::initialize_advance() 10 0.06264 0.06907 0.07273 2.25% FabArray::ParallelCopy_finish() 41 0.03601 0.04947 0.06949 2.15% Castro::do_new_sources() 10 0.05952 0.06374 0.06837 2.12% Castro::computeTemp() 63 0.06364 0.06487 0.06598 2.04% Castro::reset_internal_energy(MultiFab) 63 0.04507 0.04617 0.04701 1.46% Castro::reset_internal_energy(Fab) 1008 0.04482 0.0459 0.0467 1.45% StateDataPhysBCFunct::() 41 0.03206 0.0346 0.04492 1.39% StateData::FillBoundary(geom) 41 0.03194 0.03449 0.04481 1.39% FabArray::ParallelCopy_nowait() 41 0.03462 0.03668 0.03921 1.21% Castro::normalize_species() 62 0.03396 0.03458 0.0353 1.09% Castro::construct_new_source() 50 0.02857 0.03024 0.03214 1.00% Castro::finalize_do_advance() 10 0.02208 0.02548 0.03164 0.98% Castro::construct_new_gravity_source() 10 0.02247 0.02389 0.02569 0.80% Gravity::interpolate_monopole_grav() 21 0.02461 0.02496 0.02551 0.79% Castro::post_init() 1 0.02355 0.02363 0.02376 0.74% Amr::writePlotFile() 2 0.02213 0.02221 0.02239 0.69% Castro::post_timestep() 10 0.01382 0.01416 0.01466 0.45% Castro::Castro() 1 0.009689 0.01136 0.01465 0.45% Castro::apply_source_to_state() 20 0.01265 0.01362 0.01463 0.45% FabArray::Saxpy() 20 0.01259 0.01356 0.01456 0.45% VisMF::Write(FabArray) 2 0.008049 0.0088 0.01227 0.38% FabArray::setDomainBndry() 41 0.009131 0.01102 0.01187 0.37% Castro::construct_old_source() 50 0.009365 0.0106 0.01135 0.35% Castro::construct_old_gravity_source() 10 0.009288 0.01052 0.01126 0.35% Castro::check_for_nan() 20 0.009759 0.0106 0.01122 0.35% MultiFab::contains_nan() 20 0.009732 0.01057 0.0112 0.35% Castro::initMFs() 1 0.006464 0.007621 0.01037 0.32% Castro::computeNewDt() 9 0.01012 0.01014 0.01016 0.31% AmrLevel::AmrLevel(dm) 1 0.005159 0.006292 0.008544 0.26% StateData::define() 4 0.005152 0.006283 0.008532 0.26% Other 260 0.01501 0.02351 0.03062 0.95% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 3 B 3 B 6 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8625 KiB 8645 KiB 8651 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6719 KiB 6724 KiB 6726 KiB 7154 KiB 7154 KiB 7154 KiB StateData::define() 32 7112 KiB 7121 KiB 7124 KiB 7154 KiB 7154 KiB 7154 KiB Castro::initialize_do_advance() 80 4514 KiB 4519 KiB 4530 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 234 KiB 245 KiB 254 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 15 KiB 16 KiB 21 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2777 KiB 2785 KiB 2788 KiB 3001 KiB 3001 KiB 3001 KiB Gravity::make_radial_gravity() 168 233 KiB 237 KiB 243 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 30 KiB 40 KiB 51 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2020 KiB 2024 KiB 2025 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 80 KiB 81 KiB 82 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 70 KiB 72 KiB 74 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (26.05-3-g4ceb814db7d7) finalized