Initializing AMReX (26.05-55-g750b74d10a21)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (26.05-55-g750b74d10a21) initialized Starting run at 05:17:17 UTC on 2026-05-21. Successfully read inputs file ... Castro git describe: 26.05-3-g308427cb3 AMReX git describe: 26.05-55-g750b74d10 Microphysics git describe: 26.05-1-g106dcbb2 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014779588 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.333332252 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.320505511 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.313550677 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.312692025 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.346627161 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.279259782 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.274380419 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.274437957 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.275644812 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.274288381 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.006696543 seconds Ending run at 05:17:21 UTC on 2026-05-21. Run time = 3.186682771 Run time without initialization = 3.013969851 Average number of zones advanced per microsecond: 0.870 Average number of zones advanced per microsecond per rank: 0.109 TinyProfiler total time across processes [min...avg...max]: 3.1837 ... 3.1859 ... 3.1869 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 1.9354 2.0399 2.1244 66.66% Gravity::make_radial_gravity() 21 0.2804 0.2865 0.3046 9.56% check_for_negative_density() 10 0.03222 0.1177 0.2273 7.13% Castro::initData() 1 0.04116 0.07357 0.1063 3.34% Castro::estTimeStep() 21 0.0274 0.06249 0.09831 3.08% amrex::Copy() 193 0.06152 0.08005 0.08757 2.75% FabArray::ParallelCopy_finish() 41 0.03527 0.04539 0.07782 2.44% FabArray::setVal() 143 0.05436 0.06562 0.07103 2.23% FillPatchIterator::Initialize 41 0.04032 0.04419 0.04613 1.45% Castro::reset_internal_energy(Fab) 1008 0.04439 0.04513 0.04589 1.44% FabArray::ParallelCopy_nowait() 41 0.02774 0.03644 0.04026 1.26% Castro::normalize_species() 62 0.03375 0.03487 0.03631 1.14% StateData::FillBoundary(geom) 41 0.0293 0.03273 0.03443 1.08% Castro::construct_new_gravity_source() 10 0.02222 0.02324 0.02504 0.79% Gravity::interpolate_monopole_grav() 21 0.02468 0.02487 0.02503 0.79% Castro::initialize_do_advance() 10 0.02014 0.02394 0.025 0.78% Castro::computeTemp() 63 0.0182 0.01842 0.01878 0.59% FabArray::Saxpy() 20 0.01091 0.01277 0.01392 0.44% Castro::initialize_advance() 10 0.00528 0.009863 0.01289 0.40% VisMF::Write(FabArray) 2 0.007886 0.00847 0.01191 0.37% MultiFab::contains_nan() 20 0.009538 0.01029 0.01139 0.36% FabArray::setDomainBndry() 41 0.007695 0.01036 0.01135 0.36% Amr::writePlotFile() 2 0.007652 0.01005 0.01086 0.34% Castro::construct_old_gravity_source() 10 0.007443 0.009703 0.01047 0.33% Amr::coarseTimeStep() 10 0.005544 0.006853 0.01031 0.32% Castro::initMFs() 1 0.006212 0.007172 0.009182 0.29% Castro::finalize_do_advance() 10 0.003643 0.006799 0.007976 0.25% StateData::define() 4 0.0053 0.0059 0.007329 0.23% Castro::construct_new_source() 50 0.005603 0.006105 0.006353 0.20% Gravity::get_new_grav_vector() 11 0.002761 0.003803 0.004213 0.13% Gravity::get_old_grav_vector() 10 0.001647 0.002539 0.003075 0.10% main() 1 0.001845 0.001941 0.002055 0.06% AmrLevel::FillPatch() 41 0.0008183 0.001097 0.001245 0.04% Amr::timeStep() 10 0.0001372 0.0001735 0.0003253 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002417 0.0002584 0.0002811 0.01% Castro::do_advance_ctu() 10 0.000135 0.0001608 0.0001937 0.01% Castro::clean_state() 62 0.000134 0.0001469 0.0001713 0.01% FillPatchIterator::FillFromLevel0() 41 9.709e-05 0.0001107 0.0001226 0.00% StateDataPhysBCFunct::() 41 9.594e-05 0.0001025 0.0001077 0.00% Castro::do_old_sources() 10 6.43e-05 8.85e-05 0.0001013 0.00% Castro::construct_old_source() 50 5.179e-05 7.598e-05 9.025e-05 0.00% FabArray::ParallelCopy() 41 6.954e-05 7.795e-05 8.998e-05 0.00% Castro::Castro() 1 5.652e-05 6.698e-05 8.148e-05 0.00% Amr::FinalizeInit() 1 3.589e-06 1.339e-05 7.78e-05 0.00% Amr::defBaseLevel() 1 3.918e-05 4.728e-05 7.297e-05 0.00% FillPatchSingleLevel 41 6.052e-05 6.685e-05 7.17e-05 0.00% Castro::subcycle_advance_ctu() 10 4.255e-05 5.374e-05 6.699e-05 0.00% Castro::do_new_sources() 10 4.788e-05 5.924e-05 6.682e-05 0.00% Castro::apply_source_to_state() 20 3.549e-05 4.978e-05 5.632e-05 0.00% Castro::advance() 10 3.007e-05 4.031e-05 4.517e-05 0.00% Castro::construct_old_gravity() 10 3.613e-05 3.999e-05 4.475e-05 0.00% Castro::construct_new_gravity() 10 2.944e-05 3.307e-05 4.177e-05 0.00% Castro::check_for_nan() 20 2.233e-05 2.603e-05 3.949e-05 0.00% Castro::expand_state() 10 1.942e-05 2.267e-05 2.588e-05 0.00% Castro::post_timestep() 10 1.464e-05 1.679e-05 1.956e-05 0.00% Castro::computeNewDt() 9 8.859e-06 1.083e-05 1.375e-05 0.00% AmrLevel::AmrLevel(dm) 1 6.342e-06 8.262e-06 9.936e-06 0.00% Castro::computeInitialDt() 2 5.557e-06 6.795e-06 8.301e-06 0.00% Amr::InitializeInit() 1 2.662e-06 3.636e-06 6.748e-06 0.00% Castro::post_init() 1 2.094e-06 2.689e-06 3.401e-06 0.00% Amr::init() 1 1.879e-06 2.16e-06 2.531e-06 0.00% Amr::initialInit() 1 1.486e-06 1.736e-06 2.137e-06 0.00% Other 260 0.01057 0.01531 0.01797 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.184 3.186 3.187 100.00% Amr::coarseTimeStep() 10 3.005 3.005 3.005 94.30% Amr::timeStep() 10 2.984 2.987 2.988 93.77% Castro::advance() 10 2.969 2.973 2.974 93.32% Castro::subcycle_advance_ctu() 10 2.898 2.904 2.918 91.56% Castro::do_advance_ctu() 10 2.898 2.904 2.918 91.56% Castro::construct_ctu_hydro_source() 10 2.173 2.177 2.182 68.46% Gravity::make_radial_gravity() 21 0.2978 0.3045 0.3178 9.97% check_for_negative_density() 10 0.03222 0.1177 0.2273 7.13% Gravity::get_new_grav_vector() 11 0.2063 0.2079 0.2089 6.55% AmrLevel::FillPatch() 41 0.1976 0.2018 0.2086 6.55% Castro::construct_old_gravity() 10 0.1773 0.1814 0.1912 6.00% Gravity::get_old_grav_vector() 10 0.1767 0.1807 0.1906 5.98% FillPatchIterator::Initialize 41 0.1635 0.1696 0.1847 5.80% Castro::construct_new_gravity() 10 0.1827 0.1834 0.1844 5.79% Amr::init() 1 0.1693 0.1715 0.1724 5.41% Castro::initialize_do_advance() 10 0.1623 0.168 0.1713 5.38% Amr::initialInit() 1 0.1546 0.1571 0.1584 4.97% FillPatchIterator::FillFromLevel0() 41 0.1067 0.115 0.1353 4.25% FillPatchSingleLevel 41 0.1066 0.1149 0.1352 4.24% Amr::InitializeInit() 1 0.06439 0.09611 0.129 4.05% Amr::defBaseLevel() 1 0.06439 0.09611 0.129 4.05% Castro::expand_state() 10 0.1083 0.1106 0.115 3.61% Castro::initData() 1 0.04478 0.07715 0.1097 3.44% FabArray::ParallelCopy() 41 0.0723 0.08202 0.1057 3.32% Castro::clean_state() 62 0.1029 0.1044 0.1052 3.30% Castro::estTimeStep() 21 0.0274 0.06249 0.09831 3.08% Castro::do_old_sources() 10 0.09088 0.09349 0.09818 3.08% Amr::FinalizeInit() 1 0.028 0.06103 0.09333 2.93% amrex::Copy() 193 0.06152 0.08005 0.08757 2.75% FabArray::ParallelCopy_finish() 41 0.03527 0.04539 0.07782 2.44% FabArray::setVal() 143 0.05436 0.06562 0.07103 2.23% Castro::initialize_advance() 10 0.05176 0.06593 0.07051 2.21% Castro::computeInitialDt() 2 0.002583 0.03528 0.06719 2.11% Castro::do_new_sources() 10 0.05705 0.06109 0.06558 2.06% Castro::computeTemp() 63 0.06314 0.06381 0.06462 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04464 0.04539 0.04614 1.45% Castro::reset_internal_energy(Fab) 1008 0.04439 0.04513 0.04589 1.44% FabArray::ParallelCopy_nowait() 41 0.02785 0.03655 0.04035 1.27% Castro::normalize_species() 62 0.03375 0.03487 0.03631 1.14% StateDataPhysBCFunct::() 41 0.0294 0.03283 0.03454 1.08% StateData::FillBoundary(geom) 41 0.0293 0.03273 0.03443 1.08% Castro::construct_new_source() 50 0.02782 0.02935 0.0314 0.99% Castro::finalize_do_advance() 10 0.01696 0.02409 0.02855 0.90% Castro::post_init() 1 0.025 0.02569 0.02616 0.82% Castro::construct_new_gravity_source() 10 0.02222 0.02324 0.02504 0.79% Gravity::interpolate_monopole_grav() 21 0.02468 0.02487 0.02503 0.79% Amr::writePlotFile() 2 0.02061 0.02112 0.02173 0.68% Castro::post_timestep() 10 0.01395 0.0143 0.01464 0.46% Castro::apply_source_to_state() 20 0.01095 0.01282 0.01397 0.44% FabArray::Saxpy() 20 0.01091 0.01277 0.01392 0.44% Castro::Castro() 1 0.009118 0.01078 0.01246 0.39% VisMF::Write(FabArray) 2 0.007886 0.00847 0.01191 0.37% Castro::check_for_nan() 20 0.009561 0.01031 0.01141 0.36% MultiFab::contains_nan() 20 0.009538 0.01029 0.01139 0.36% FabArray::setDomainBndry() 41 0.007695 0.01036 0.01135 0.36% Castro::construct_old_source() 50 0.007494 0.009779 0.01055 0.33% Castro::construct_old_gravity_source() 10 0.007443 0.009703 0.01047 0.33% Castro::computeNewDt() 9 0.009916 0.009938 0.00996 0.31% Castro::initMFs() 1 0.006212 0.007172 0.009182 0.29% AmrLevel::AmrLevel(dm) 1 0.005307 0.005908 0.007339 0.23% StateData::define() 4 0.0053 0.0059 0.007329 0.23% Other 260 0.01422 0.02175 0.02595 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 3 B 3 B 5 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8640 KiB 8650 KiB 8654 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6736 KiB 6740 KiB 6742 KiB 7154 KiB 7154 KiB 7154 KiB StateData::define() 32 7116 KiB 7124 KiB 7125 KiB 7154 KiB 7154 KiB 7154 KiB Castro::initialize_do_advance() 80 4528 KiB 4534 KiB 4551 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 230 KiB 235 KiB 245 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 15 KiB 16 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2788 KiB 2792 KiB 2794 KiB 3001 KiB 3001 KiB 3001 KiB Gravity::make_radial_gravity() 168 237 KiB 243 KiB 253 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 33 KiB 37 KiB 49 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2022 KiB 2025 KiB 2025 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 82 KiB 83 KiB 84 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 71 KiB 72 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (26.05-55-g750b74d10a21) finalized