Initializing AMReX (26.06-5-g65db2e4e678a)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (26.06-5-g65db2e4e678a) initialized Starting run at 05:17:15 UTC on 2026-06-04. Successfully read inputs file ... Castro git describe: 26.06-1-g524fc2e04 AMReX git describe: 26.06-5-g65db2e4e6 Microphysics git describe: 26.06-4-g4bad0947 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013640964 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.330644988 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.324832782 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.318476595 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.320551069 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.353703843 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.284815686 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.277459041 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.278139859 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.278341345 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.279654718 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.006854438 seconds Ending run at 05:17:18 UTC on 2026-06-04. Run time = 3.223888338 Run time without initialization = 3.056014781 Average number of zones advanced per microsecond: 0.858 Average number of zones advanced per microsecond per rank: 0.107 TinyProfiler total time across processes [min...avg...max]: 3.2218 ... 3.2233 ... 3.2239 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 1.9657 2.0662 2.1539 66.81% Gravity::make_radial_gravity() 21 0.2862 0.2932 0.3069 9.52% check_for_negative_density() 10 0.03266 0.1201 0.2247 6.97% Castro::estTimeStep() 21 0.02525 0.06848 0.1067 3.31% Castro::initData() 1 0.03479 0.06852 0.1027 3.19% amrex::Copy() 193 0.06242 0.07866 0.08574 2.66% FabArray::ParallelCopy_finish() 41 0.04518 0.0552 0.0799 2.48% FabArray::setVal() 143 0.05884 0.06709 0.07279 2.26% Castro::reset_internal_energy(Fab) 1008 0.04412 0.04558 0.04643 1.44% FillPatchIterator::Initialize 41 0.03837 0.03959 0.0413 1.28% FabArray::ParallelCopy_nowait() 41 0.02576 0.03577 0.03872 1.20% StateData::FillBoundary(geom) 41 0.03068 0.03279 0.03544 1.10% Castro::normalize_species() 62 0.0336 0.03436 0.03501 1.09% Gravity::interpolate_monopole_grav() 21 0.02502 0.02535 0.02569 0.80% Castro::initialize_do_advance() 10 0.0162 0.0199 0.02559 0.79% Castro::construct_new_gravity_source() 10 0.02178 0.0234 0.02515 0.78% Castro::computeTemp() 63 0.01821 0.01851 0.01876 0.58% FabArray::Saxpy() 20 0.01078 0.01279 0.01385 0.43% Castro::initialize_advance() 10 0.005255 0.01002 0.01253 0.39% FabArray::setDomainBndry() 41 0.00723 0.01073 0.01224 0.38% Amr::writePlotFile() 2 0.006955 0.009892 0.01223 0.38% Amr::coarseTimeStep() 10 0.004963 0.00852 0.0119 0.37% MultiFab::contains_nan() 20 0.009186 0.01045 0.01145 0.36% VisMF::Write(FabArray) 2 0.007116 0.008304 0.01078 0.33% Castro::construct_old_gravity_source() 10 0.006997 0.00988 0.01075 0.33% Castro::initMFs() 1 0.006465 0.00701 0.008842 0.27% Castro::finalize_do_advance() 10 0.001195 0.004495 0.00824 0.26% Castro::construct_new_source() 50 0.005737 0.006198 0.00643 0.20% Gravity::get_new_grav_vector() 11 0.002806 0.003943 0.004485 0.14% Gravity::get_old_grav_vector() 10 0.001648 0.00253 0.003058 0.09% main() 1 0.001911 0.002071 0.0022 0.07% AmrLevel::FillPatch() 41 0.0009119 0.001179 0.001321 0.04% Amr::timeStep() 10 0.0001362 0.0001815 0.0003552 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002353 0.0002554 0.0002783 0.01% Castro::do_advance_ctu() 10 0.0001487 0.0001687 0.0002043 0.01% Castro::clean_state() 62 0.0001231 0.0001477 0.0001709 0.01% FillPatchIterator::FillFromLevel0() 41 9.923e-05 0.0001125 0.0001238 0.00% Castro::Castro() 1 4.844e-05 8.079e-05 0.0001145 0.00% StateDataPhysBCFunct::() 41 0.0001032 0.0001059 0.0001091 0.00% Castro::do_old_sources() 10 7.786e-05 9.269e-05 0.0001054 0.00% FabArray::ParallelCopy() 41 8.046e-05 8.724e-05 9.855e-05 0.00% FillPatchSingleLevel 41 6.4e-05 7.21e-05 8.769e-05 0.00% Castro::construct_old_source() 50 6.54e-05 7.79e-05 8.678e-05 0.00% Amr::FinalizeInit() 1 3.291e-06 1.244e-05 6.966e-05 0.00% Castro::do_new_sources() 10 5.203e-05 5.928e-05 6.636e-05 0.00% Castro::subcycle_advance_ctu() 10 4.366e-05 5.305e-05 6.064e-05 0.00% Castro::apply_source_to_state() 20 4.943e-05 5.543e-05 5.938e-05 0.00% Castro::advance() 10 3.589e-05 4.188e-05 5.17e-05 0.00% Castro::construct_old_gravity() 10 3.585e-05 4.2e-05 5.101e-05 0.00% Amr::defBaseLevel() 1 3.525e-05 3.997e-05 4.942e-05 0.00% Castro::construct_new_gravity() 10 3.108e-05 3.525e-05 4.301e-05 0.00% Castro::check_for_nan() 20 2.382e-05 2.489e-05 2.695e-05 0.00% Castro::expand_state() 10 1.916e-05 2.194e-05 2.595e-05 0.00% Castro::computeNewDt() 9 9.26e-06 1.089e-05 1.942e-05 0.00% Castro::post_timestep() 10 1.542e-05 1.646e-05 1.767e-05 0.00% AmrLevel::AmrLevel(dm) 1 6.32e-06 8.31e-06 1.234e-05 0.00% Amr::initialInit() 1 1.411e-06 2.994e-06 1.224e-05 0.00% Castro::computeInitialDt() 2 5.606e-06 7.095e-06 8.796e-06 0.00% Amr::InitializeInit() 1 2.594e-06 4.372e-06 6.059e-06 0.00% Amr::init() 1 1.726e-06 2.338e-06 4.303e-06 0.00% Castro::post_init() 1 2.605e-06 3.068e-06 4.117e-06 0.00% Other 264 0.0167 0.02078 0.02478 0.77% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.222 3.223 3.224 100.00% Amr::coarseTimeStep() 10 3.047 3.047 3.047 94.51% Amr::timeStep() 10 3.024 3.027 3.031 94.01% Castro::advance() 10 3.009 3.013 3.016 93.55% Castro::subcycle_advance_ctu() 10 2.94 2.944 2.96 91.80% Castro::do_advance_ctu() 10 2.94 2.944 2.96 91.80% Castro::construct_ctu_hydro_source() 10 2.203 2.205 2.21 68.55% Gravity::make_radial_gravity() 21 0.3036 0.311 0.3201 9.93% check_for_negative_density() 10 0.03266 0.1201 0.2247 6.97% AmrLevel::FillPatch() 41 0.1955 0.2061 0.2139 6.64% Gravity::get_new_grav_vector() 11 0.2104 0.2115 0.2125 6.59% Castro::construct_old_gravity() 10 0.1781 0.1846 0.1909 5.92% Castro::construct_new_gravity() 10 0.189 0.1898 0.1903 5.90% Gravity::get_old_grav_vector() 10 0.1774 0.1839 0.1902 5.90% FillPatchIterator::Initialize 41 0.1637 0.1745 0.1863 5.78% Castro::initialize_do_advance() 10 0.1601 0.1676 0.1731 5.37% Amr::init() 1 0.1649 0.1669 0.1675 5.20% Amr::initialInit() 1 0.1509 0.153 0.1537 4.77% FillPatchIterator::FillFromLevel0() 41 0.1144 0.1242 0.1378 4.27% FillPatchSingleLevel 41 0.1143 0.1241 0.1377 4.27% Amr::InitializeInit() 1 0.05594 0.09072 0.1255 3.89% Amr::defBaseLevel() 1 0.05594 0.09072 0.1255 3.89% Castro::expand_state() 10 0.106 0.1139 0.1192 3.70% Castro::estTimeStep() 21 0.02525 0.06848 0.1067 3.31% Castro::clean_state() 62 0.103 0.1044 0.1061 3.29% Castro::initData() 1 0.03825 0.07207 0.106 3.29% FabArray::ParallelCopy() 41 0.08195 0.09114 0.1058 3.28% Castro::do_old_sources() 10 0.09157 0.09483 0.09742 3.02% Amr::FinalizeInit() 1 0.02546 0.06227 0.09675 3.00% amrex::Copy() 193 0.06242 0.07866 0.08574 2.66% FabArray::ParallelCopy_finish() 41 0.04518 0.0552 0.0799 2.48% Castro::computeInitialDt() 2 0.002447 0.0392 0.07357 2.28% FabArray::setVal() 143 0.05884 0.06709 0.07279 2.26% Castro::initialize_advance() 10 0.05408 0.06629 0.06992 2.17% Castro::do_new_sources() 10 0.05873 0.06211 0.06812 2.11% Castro::computeTemp() 63 0.06256 0.06434 0.06536 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04435 0.04583 0.04671 1.45% Castro::reset_internal_energy(Fab) 1008 0.04412 0.04558 0.04643 1.44% FabArray::ParallelCopy_nowait() 41 0.02586 0.03586 0.03881 1.20% StateDataPhysBCFunct::() 41 0.03078 0.03289 0.03554 1.10% StateData::FillBoundary(geom) 41 0.03068 0.03279 0.03544 1.10% Castro::normalize_species() 62 0.0336 0.03436 0.03501 1.09% Castro::construct_new_source() 50 0.02752 0.0296 0.03154 0.98% Castro::finalize_do_advance() 10 0.01698 0.02364 0.03117 0.97% Gravity::interpolate_monopole_grav() 21 0.02502 0.02535 0.02569 0.80% Castro::construct_new_gravity_source() 10 0.02178 0.0234 0.02515 0.78% Castro::post_init() 1 0.02275 0.0229 0.023 0.71% Amr::writePlotFile() 2 0.02069 0.02082 0.02121 0.66% Castro::post_timestep() 10 0.01406 0.01434 0.01464 0.45% Castro::apply_source_to_state() 20 0.01084 0.01285 0.01391 0.43% FabArray::Saxpy() 20 0.01078 0.01279 0.01385 0.43% Castro::Castro() 1 0.01029 0.01087 0.0123 0.38% FabArray::setDomainBndry() 41 0.00723 0.01073 0.01224 0.38% Castro::check_for_nan() 20 0.00921 0.01047 0.01148 0.36% MultiFab::contains_nan() 20 0.009186 0.01045 0.01145 0.36% Castro::construct_old_source() 50 0.007063 0.009958 0.01083 0.34% VisMF::Write(FabArray) 2 0.007116 0.008304 0.01078 0.33% Castro::construct_old_gravity_source() 10 0.006997 0.00988 0.01075 0.33% Castro::computeNewDt() 9 0.01012 0.01016 0.01018 0.32% Castro::initMFs() 1 0.006465 0.00701 0.008842 0.27% AmrLevel::AmrLevel(dm) 1 0.005224 0.005678 0.007044 0.22% Other 264 0.02018 0.02693 0.03191 0.99% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 2 B 3 B 5 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8645 KiB 8653 KiB 8656 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6750 KiB 6756 KiB 6761 KiB 7154 KiB 7154 KiB 7154 KiB StateData::define() 32 7118 KiB 7125 KiB 7127 KiB 7154 KiB 7154 KiB 7154 KiB Castro::initialize_do_advance() 80 4542 KiB 4547 KiB 4567 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 224 KiB 238 KiB 249 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 13 KiB 15 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2791 KiB 2797 KiB 2801 KiB 3001 KiB 3001 KiB 3001 KiB Gravity::make_radial_gravity() 168 239 KiB 245 KiB 253 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 38 KiB 43 KiB 47 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2023 KiB 2025 KiB 2026 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 83 KiB 84 KiB 84 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 70 KiB 73 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (26.06-5-g65db2e4e678a) finalized